Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13610 and HMPREF1058_RS13605 are separated by 112 nucleotides HMPREF1058_RS13605 and HMPREF1058_RS13600 are separated by 281 nucleotides
HMPREF1058_RS13610: HMPREF1058_RS13610 - rod shape-determining protein, at 1,419,395 to 1,420,417
_RS13610
HMPREF1058_RS13605: HMPREF1058_RS13605 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,420,530 to 1,422,053
_RS13605
HMPREF1058_RS13600: HMPREF1058_RS13600 - inorganic phosphate transporter, at 1,422,335 to 1,424,587
_RS13600
Position (kb)
1420
1421
1422
1423 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1420.486 kb on - strand at 1420.486 kb on - strand at 1420.488 kb on - strand at 1420.532 kb on - strand at 1420.570 kb on - strand at 1420.827 kb on - strand, within HMPREF1058_RS13605 at 1420.842 kb on - strand, within HMPREF1058_RS13605 at 1420.857 kb on - strand, within HMPREF1058_RS13605 at 1420.857 kb on - strand, within HMPREF1058_RS13605 at 1420.857 kb on - strand, within HMPREF1058_RS13605 at 1420.872 kb on - strand, within HMPREF1058_RS13605 at 1420.879 kb on - strand, within HMPREF1058_RS13605 at 1421.004 kb on - strand, within HMPREF1058_RS13605 at 1421.013 kb on - strand, within HMPREF1058_RS13605 at 1421.072 kb on - strand, within HMPREF1058_RS13605 at 1421.085 kb on - strand, within HMPREF1058_RS13605 at 1421.145 kb on - strand, within HMPREF1058_RS13605 at 1421.145 kb on - strand, within HMPREF1058_RS13605 at 1421.247 kb on - strand, within HMPREF1058_RS13605 at 1421.411 kb on - strand, within HMPREF1058_RS13605 at 1421.592 kb on - strand, within HMPREF1058_RS13605 at 1421.592 kb on - strand, within HMPREF1058_RS13605 at 1421.594 kb on - strand, within HMPREF1058_RS13605 at 1421.594 kb on - strand at 1421.661 kb on - strand, within HMPREF1058_RS13605 at 1421.876 kb on - strand at 1421.876 kb on - strand, within HMPREF1058_RS13605 at 1421.974 kb on - strand at 1421.985 kb on - strand at 1421.985 kb on - strand at 1422.070 kb on - strand at 1422.135 kb on - strand at 1422.144 kb on + strand at 1422.144 kb on + strand at 1422.145 kb on - strand at 1422.180 kb on - strand at 1422.186 kb on - strand at 1422.252 kb on - strand at 1422.262 kb on + strand at 1422.262 kb on + strand at 1422.270 kb on - strand at 1422.270 kb on - strand at 1422.270 kb on - strand at 1422.280 kb on - strand at 1422.285 kb on - strand at 1422.287 kb on + strand at 1422.288 kb on - strand at 1422.289 kb on + strand at 1422.427 kb on + strand at 1422.448 kb on + strand at 1422.582 kb on + strand, within HMPREF1058_RS13600 at 1422.582 kb on + strand, within HMPREF1058_RS13600 at 1422.589 kb on + strand, within HMPREF1058_RS13600 at 1422.618 kb on + strand, within HMPREF1058_RS13600 at 1422.632 kb on - strand, within HMPREF1058_RS13600 at 1422.709 kb on - strand, within HMPREF1058_RS13600 at 1422.747 kb on + strand, within HMPREF1058_RS13600 at 1422.843 kb on + strand, within HMPREF1058_RS13600 at 1422.844 kb on - strand, within HMPREF1058_RS13600 at 1422.844 kb on - strand, within HMPREF1058_RS13600 at 1422.874 kb on + strand, within HMPREF1058_RS13600 at 1422.878 kb on + strand, within HMPREF1058_RS13600 at 1422.880 kb on + strand, within HMPREF1058_RS13600 at 1422.897 kb on - strand, within HMPREF1058_RS13600 at 1422.942 kb on - strand, within HMPREF1058_RS13600 at 1422.955 kb on - strand, within HMPREF1058_RS13600 at 1423.029 kb on + strand, within HMPREF1058_RS13600 at 1423.030 kb on - strand, within HMPREF1058_RS13600 at 1423.030 kb on - strand, within HMPREF1058_RS13600
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,420,486 - -0.1 1,420,486 - -1.8 1,420,488 - -1.7 1,420,532 - -0.2 1,420,570 - -1.6 1,420,827 - HMPREF1058_RS13605 0.19 -0.7 1,420,842 - HMPREF1058_RS13605 0.20 -0.2 1,420,857 - HMPREF1058_RS13605 0.21 -2.4 1,420,857 - HMPREF1058_RS13605 0.21 -2.6 1,420,857 - HMPREF1058_RS13605 0.21 -1.6 1,420,872 - HMPREF1058_RS13605 0.22 -2.8 1,420,879 - HMPREF1058_RS13605 0.23 -1.8 1,421,004 - HMPREF1058_RS13605 0.31 -1.9 1,421,013 - HMPREF1058_RS13605 0.32 -3.3 1,421,072 - HMPREF1058_RS13605 0.36 -4.6 1,421,085 - HMPREF1058_RS13605 0.36 -3.1 1,421,145 - HMPREF1058_RS13605 0.40 -4.0 1,421,145 - HMPREF1058_RS13605 0.40 -3.9 1,421,247 - HMPREF1058_RS13605 0.47 -1.0 1,421,411 - HMPREF1058_RS13605 0.58 -0.6 1,421,592 - HMPREF1058_RS13605 0.70 -1.4 1,421,592 - HMPREF1058_RS13605 0.70 -2.8 1,421,594 - HMPREF1058_RS13605 0.70 -2.5 1,421,594 - -1.0 1,421,661 - HMPREF1058_RS13605 0.74 -3.0 1,421,876 - -1.9 1,421,876 - HMPREF1058_RS13605 0.88 -2.4 1,421,974 - -3.7 1,421,985 - -3.7 1,421,985 - -2.8 1,422,070 - -1.7 1,422,135 - +0.3 1,422,144 + -1.5 1,422,144 + +0.3 1,422,145 - -0.4 1,422,180 - -0.4 1,422,186 - +3.8 1,422,252 - +0.7 1,422,262 + -0.3 1,422,262 + +1.3 1,422,270 - +0.4 1,422,270 - +0.3 1,422,270 - +0.3 1,422,280 - +0.1 1,422,285 - +0.5 1,422,287 + -0.7 1,422,288 - -0.2 1,422,289 + +0.3 1,422,427 + +1.3 1,422,448 + -1.3 1,422,582 + HMPREF1058_RS13600 0.11 -0.4 1,422,582 + HMPREF1058_RS13600 0.11 +0.2 1,422,589 + HMPREF1058_RS13600 0.11 +0.3 1,422,618 + HMPREF1058_RS13600 0.13 -0.8 1,422,632 - HMPREF1058_RS13600 0.13 +1.3 1,422,709 - HMPREF1058_RS13600 0.17 +0.4 1,422,747 + HMPREF1058_RS13600 0.18 +0.3 1,422,843 + HMPREF1058_RS13600 0.23 +1.2 1,422,844 - HMPREF1058_RS13600 0.23 +0.6 1,422,844 - HMPREF1058_RS13600 0.23 +0.2 1,422,874 + HMPREF1058_RS13600 0.24 -0.3 1,422,878 + HMPREF1058_RS13600 0.24 +0.2 1,422,880 + HMPREF1058_RS13600 0.24 +0.8 1,422,897 - HMPREF1058_RS13600 0.25 +1.0 1,422,942 - HMPREF1058_RS13600 0.27 -0.1 1,422,955 - HMPREF1058_RS13600 0.28 +0.6 1,423,029 + HMPREF1058_RS13600 0.31 -0.8 1,423,030 - HMPREF1058_RS13600 0.31 +0.6 1,423,030 - HMPREF1058_RS13600 0.31 +0.5
Or see this region's nucleotide sequence