Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13605

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS13610 and HMPREF1058_RS13605 are separated by 112 nucleotidesHMPREF1058_RS13605 and HMPREF1058_RS13600 are separated by 281 nucleotides HMPREF1058_RS13610: HMPREF1058_RS13610 - rod shape-determining protein, at 1,419,395 to 1,420,417 _RS13610 HMPREF1058_RS13605: HMPREF1058_RS13605 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,420,530 to 1,422,053 _RS13605 HMPREF1058_RS13600: HMPREF1058_RS13600 - inorganic phosphate transporter, at 1,422,335 to 1,424,587 _RS13600 Position (kb) 1420 1421 1422 1423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1420.486 kb on - strandat 1420.486 kb on - strandat 1420.488 kb on - strandat 1420.532 kb on - strandat 1420.570 kb on - strandat 1420.827 kb on - strand, within HMPREF1058_RS13605at 1420.842 kb on - strand, within HMPREF1058_RS13605at 1420.857 kb on - strand, within HMPREF1058_RS13605at 1420.857 kb on - strand, within HMPREF1058_RS13605at 1420.857 kb on - strand, within HMPREF1058_RS13605at 1420.872 kb on - strand, within HMPREF1058_RS13605at 1420.879 kb on - strand, within HMPREF1058_RS13605at 1421.004 kb on - strand, within HMPREF1058_RS13605at 1421.013 kb on - strand, within HMPREF1058_RS13605at 1421.072 kb on - strand, within HMPREF1058_RS13605at 1421.085 kb on - strand, within HMPREF1058_RS13605at 1421.145 kb on - strand, within HMPREF1058_RS13605at 1421.145 kb on - strand, within HMPREF1058_RS13605at 1421.247 kb on - strand, within HMPREF1058_RS13605at 1421.411 kb on - strand, within HMPREF1058_RS13605at 1421.592 kb on - strand, within HMPREF1058_RS13605at 1421.592 kb on - strand, within HMPREF1058_RS13605at 1421.594 kb on - strand, within HMPREF1058_RS13605at 1421.594 kb on - strandat 1421.661 kb on - strand, within HMPREF1058_RS13605at 1421.876 kb on - strandat 1421.876 kb on - strand, within HMPREF1058_RS13605at 1421.974 kb on - strandat 1421.985 kb on - strandat 1421.985 kb on - strandat 1422.070 kb on - strandat 1422.135 kb on - strandat 1422.144 kb on + strandat 1422.144 kb on + strandat 1422.145 kb on - strandat 1422.180 kb on - strandat 1422.186 kb on - strandat 1422.252 kb on - strandat 1422.262 kb on + strandat 1422.262 kb on + strandat 1422.270 kb on - strandat 1422.270 kb on - strandat 1422.270 kb on - strandat 1422.280 kb on - strandat 1422.285 kb on - strandat 1422.287 kb on + strandat 1422.288 kb on - strandat 1422.289 kb on + strandat 1422.427 kb on + strandat 1422.448 kb on + strandat 1422.582 kb on + strand, within HMPREF1058_RS13600at 1422.582 kb on + strand, within HMPREF1058_RS13600at 1422.589 kb on + strand, within HMPREF1058_RS13600at 1422.618 kb on + strand, within HMPREF1058_RS13600at 1422.632 kb on - strand, within HMPREF1058_RS13600at 1422.709 kb on - strand, within HMPREF1058_RS13600at 1422.747 kb on + strand, within HMPREF1058_RS13600at 1422.843 kb on + strand, within HMPREF1058_RS13600at 1422.844 kb on - strand, within HMPREF1058_RS13600at 1422.844 kb on - strand, within HMPREF1058_RS13600at 1422.874 kb on + strand, within HMPREF1058_RS13600at 1422.878 kb on + strand, within HMPREF1058_RS13600at 1422.880 kb on + strand, within HMPREF1058_RS13600at 1422.897 kb on - strand, within HMPREF1058_RS13600at 1422.942 kb on - strand, within HMPREF1058_RS13600at 1422.955 kb on - strand, within HMPREF1058_RS13600at 1423.029 kb on + strand, within HMPREF1058_RS13600at 1423.030 kb on - strand, within HMPREF1058_RS13600at 1423.030 kb on - strand, within HMPREF1058_RS13600

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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1,420,486 - -0.1
1,420,486 - -1.8
1,420,488 - -1.7
1,420,532 - -0.2
1,420,570 - -1.6
1,420,827 - HMPREF1058_RS13605 0.19 -0.7
1,420,842 - HMPREF1058_RS13605 0.20 -0.2
1,420,857 - HMPREF1058_RS13605 0.21 -2.4
1,420,857 - HMPREF1058_RS13605 0.21 -2.6
1,420,857 - HMPREF1058_RS13605 0.21 -1.6
1,420,872 - HMPREF1058_RS13605 0.22 -2.8
1,420,879 - HMPREF1058_RS13605 0.23 -1.8
1,421,004 - HMPREF1058_RS13605 0.31 -1.9
1,421,013 - HMPREF1058_RS13605 0.32 -3.3
1,421,072 - HMPREF1058_RS13605 0.36 -4.6
1,421,085 - HMPREF1058_RS13605 0.36 -3.1
1,421,145 - HMPREF1058_RS13605 0.40 -4.0
1,421,145 - HMPREF1058_RS13605 0.40 -3.9
1,421,247 - HMPREF1058_RS13605 0.47 -1.0
1,421,411 - HMPREF1058_RS13605 0.58 -0.6
1,421,592 - HMPREF1058_RS13605 0.70 -1.4
1,421,592 - HMPREF1058_RS13605 0.70 -2.8
1,421,594 - HMPREF1058_RS13605 0.70 -2.5
1,421,594 - -1.0
1,421,661 - HMPREF1058_RS13605 0.74 -3.0
1,421,876 - -1.9
1,421,876 - HMPREF1058_RS13605 0.88 -2.4
1,421,974 - -3.7
1,421,985 - -3.7
1,421,985 - -2.8
1,422,070 - -1.7
1,422,135 - +0.3
1,422,144 + -1.5
1,422,144 + +0.3
1,422,145 - -0.4
1,422,180 - -0.4
1,422,186 - +3.8
1,422,252 - +0.7
1,422,262 + -0.3
1,422,262 + +1.3
1,422,270 - +0.4
1,422,270 - +0.3
1,422,270 - +0.3
1,422,280 - +0.1
1,422,285 - +0.5
1,422,287 + -0.7
1,422,288 - -0.2
1,422,289 + +0.3
1,422,427 + +1.3
1,422,448 + -1.3
1,422,582 + HMPREF1058_RS13600 0.11 -0.4
1,422,582 + HMPREF1058_RS13600 0.11 +0.2
1,422,589 + HMPREF1058_RS13600 0.11 +0.3
1,422,618 + HMPREF1058_RS13600 0.13 -0.8
1,422,632 - HMPREF1058_RS13600 0.13 +1.3
1,422,709 - HMPREF1058_RS13600 0.17 +0.4
1,422,747 + HMPREF1058_RS13600 0.18 +0.3
1,422,843 + HMPREF1058_RS13600 0.23 +1.2
1,422,844 - HMPREF1058_RS13600 0.23 +0.6
1,422,844 - HMPREF1058_RS13600 0.23 +0.2
1,422,874 + HMPREF1058_RS13600 0.24 -0.3
1,422,878 + HMPREF1058_RS13600 0.24 +0.2
1,422,880 + HMPREF1058_RS13600 0.24 +0.8
1,422,897 - HMPREF1058_RS13600 0.25 +1.0
1,422,942 - HMPREF1058_RS13600 0.27 -0.1
1,422,955 - HMPREF1058_RS13600 0.28 +0.6
1,423,029 + HMPREF1058_RS13600 0.31 -0.8
1,423,030 - HMPREF1058_RS13600 0.31 +0.6
1,423,030 - HMPREF1058_RS13600 0.31 +0.5

Or see this region's nucleotide sequence