Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12795

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12800 and HMPREF1058_RS12795 are separated by 89 nucleotidesHMPREF1058_RS12795 and HMPREF1058_RS12790 are separated by 294 nucleotides HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253 _RS12800 HMPREF1058_RS12795: HMPREF1058_RS12795 - CYTH domain-containing protein, at 30,343 to 30,813 _RS12795 HMPREF1058_RS12790: HMPREF1058_RS12790 - peptide chain release factor 2, at 31,108 to 32,223 _RS12790 Position (kb) 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 29.415 kb on + strand, within HMPREF1058_RS12800at 29.415 kb on + strand, within HMPREF1058_RS12800at 29.420 kb on - strand, within HMPREF1058_RS12800at 29.421 kb on + strand, within HMPREF1058_RS12800at 29.428 kb on - strand, within HMPREF1058_RS12800at 29.481 kb on + strand, within HMPREF1058_RS12800at 29.492 kb on - strand, within HMPREF1058_RS12800at 29.521 kb on + strand, within HMPREF1058_RS12800at 29.554 kb on + strand, within HMPREF1058_RS12800at 29.555 kb on - strand, within HMPREF1058_RS12800at 29.555 kb on - strand, within HMPREF1058_RS12800at 29.586 kb on + strand, within HMPREF1058_RS12800at 29.616 kb on - strand, within HMPREF1058_RS12800at 29.618 kb on - strand, within HMPREF1058_RS12800at 29.624 kb on - strand, within HMPREF1058_RS12800at 29.642 kb on - strand, within HMPREF1058_RS12800at 29.652 kb on - strand, within HMPREF1058_RS12800at 29.652 kb on - strand, within HMPREF1058_RS12800at 29.666 kb on - strand, within HMPREF1058_RS12800at 29.708 kb on - strand, within HMPREF1058_RS12800at 29.713 kb on + strand, within HMPREF1058_RS12800at 29.819 kb on + strand, within HMPREF1058_RS12800at 29.819 kb on + strand, within HMPREF1058_RS12800at 29.822 kb on - strand, within HMPREF1058_RS12800at 29.824 kb on + strand, within HMPREF1058_RS12800at 29.825 kb on - strand, within HMPREF1058_RS12800at 29.825 kb on - strand, within HMPREF1058_RS12800at 29.825 kb on - strand, within HMPREF1058_RS12800at 29.825 kb on - strand, within HMPREF1058_RS12800at 29.825 kb on - strand, within HMPREF1058_RS12800at 29.826 kb on + strand, within HMPREF1058_RS12800at 29.840 kb on + strand, within HMPREF1058_RS12800at 29.992 kb on + strand, within HMPREF1058_RS12800at 30.109 kb on + strandat 30.110 kb on - strandat 30.143 kb on + strandat 30.226 kb on + strandat 30.226 kb on + strandat 30.255 kb on + strandat 30.334 kb on - strandat 30.335 kb on + strandat 30.337 kb on + strandat 30.338 kb on - strandat 30.338 kb on - strandat 30.338 kb on - strandat 30.550 kb on - strand, within HMPREF1058_RS12795at 30.717 kb on + strandat 30.723 kb on + strand, within HMPREF1058_RS12795at 30.723 kb on + strand, within HMPREF1058_RS12795at 30.724 kb on - strand, within HMPREF1058_RS12795at 30.725 kb on + strand, within HMPREF1058_RS12795at 30.744 kb on + strand, within HMPREF1058_RS12795at 30.745 kb on - strand, within HMPREF1058_RS12795at 30.767 kb on + strandat 30.785 kb on - strandat 30.799 kb on + strandat 30.828 kb on + strandat 30.828 kb on + strandat 30.891 kb on + strandat 30.891 kb on + strandat 30.892 kb on - strandat 30.900 kb on + strandat 30.913 kb on + strandat 30.923 kb on + strandat 30.933 kb on - strandat 30.953 kb on + strandat 30.953 kb on + strandat 30.961 kb on + strandat 30.962 kb on - strandat 30.988 kb on + strandat 31.016 kb on - strandat 31.037 kb on - strandat 31.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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29,415 + HMPREF1058_RS12800 0.66 +0.1
29,415 + HMPREF1058_RS12800 0.66 -0.1
29,420 - HMPREF1058_RS12800 0.66 -2.6
29,421 + HMPREF1058_RS12800 0.66 +0.6
29,428 - HMPREF1058_RS12800 0.67 -2.1
29,481 + HMPREF1058_RS12800 0.69 +0.2
29,492 - HMPREF1058_RS12800 0.69 -0.2
29,521 + HMPREF1058_RS12800 0.70 +2.4
29,554 + HMPREF1058_RS12800 0.72 -0.5
29,555 - HMPREF1058_RS12800 0.72 -0.3
29,555 - HMPREF1058_RS12800 0.72 +0.8
29,586 + HMPREF1058_RS12800 0.73 +1.7
29,616 - HMPREF1058_RS12800 0.74 -0.3
29,618 - HMPREF1058_RS12800 0.74 -1.9
29,624 - HMPREF1058_RS12800 0.75 -1.8
29,642 - HMPREF1058_RS12800 0.75 +1.0
29,652 - HMPREF1058_RS12800 0.76 -0.5
29,652 - HMPREF1058_RS12800 0.76 -0.5
29,666 - HMPREF1058_RS12800 0.76 +0.1
29,708 - HMPREF1058_RS12800 0.78 -0.4
29,713 + HMPREF1058_RS12800 0.78 +1.2
29,819 + HMPREF1058_RS12800 0.82 +1.2
29,819 + HMPREF1058_RS12800 0.82 +0.2
29,822 - HMPREF1058_RS12800 0.83 +0.1
29,824 + HMPREF1058_RS12800 0.83 -0.2
29,825 - HMPREF1058_RS12800 0.83 +1.1
29,825 - HMPREF1058_RS12800 0.83 +1.0
29,825 - HMPREF1058_RS12800 0.83 +0.8
29,825 - HMPREF1058_RS12800 0.83 -0.4
29,825 - HMPREF1058_RS12800 0.83 -0.3
29,826 + HMPREF1058_RS12800 0.83 +0.4
29,840 + HMPREF1058_RS12800 0.83 -0.0
29,992 + HMPREF1058_RS12800 0.89 +0.3
30,109 + +0.3
30,110 - +1.3
30,143 + +0.6
30,226 + +0.3
30,226 + +1.0
30,255 + +0.7
30,334 - +0.2
30,335 + +0.1
30,337 + -0.8
30,338 - +1.0
30,338 - -3.4
30,338 - +0.2
30,550 - HMPREF1058_RS12795 0.44 -3.4
30,717 + -1.8
30,723 + HMPREF1058_RS12795 0.81 -1.5
30,723 + HMPREF1058_RS12795 0.81 -2.8
30,724 - HMPREF1058_RS12795 0.81 -2.4
30,725 + HMPREF1058_RS12795 0.81 -2.6
30,744 + HMPREF1058_RS12795 0.85 -2.1
30,745 - HMPREF1058_RS12795 0.85 -4.6
30,767 + -2.0
30,785 - -3.9
30,799 + -1.7
30,828 + -0.3
30,828 + -1.7
30,891 + -1.3
30,891 + -0.6
30,892 - +0.5
30,900 + -1.7
30,913 + -1.6
30,923 + -2.3
30,933 - +0.0
30,953 + -2.2
30,953 + -1.4
30,961 + -1.9
30,962 - -1.2
30,988 + -2.7
31,016 - -1.1
31,037 - +0.7
31,091 - -0.7

Or see this region's nucleotide sequence