Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10345 and HMPREF1058_RS10340 are separated by 13 nucleotides HMPREF1058_RS10340 and HMPREF1058_RS10335 are separated by 11 nucleotides HMPREF1058_RS10335 and HMPREF1058_RS10330 are separated by 378 nucleotides HMPREF1058_RS10330 and HMPREF1058_RS21615 are separated by 3 nucleotides HMPREF1058_RS21615 and HMPREF1058_RS10325 are separated by 41 nucleotides
HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759
_RS10345
HMPREF1058_RS10340: HMPREF1058_RS10340 - hypothetical protein, at 689,773 to 690,420
_RS10340
HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019
_RS10335
HMPREF1058_RS10330: HMPREF1058_RS10330 - hypothetical protein, at 691,398 to 691,763
_RS10330
HMPREF1058_RS21615: HMPREF1058_RS21615 - hypothetical protein, at 691,767 to 691,907
_RS21615
HMPREF1058_RS10325: HMPREF1058_RS10325 - hypothetical protein, at 691,949 to 692,188
_RS10325
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 689.447 kb on + strand, within HMPREF1058_RS10345 at 689.456 kb on + strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.457 kb on - strand, within HMPREF1058_RS10345 at 689.563 kb on + strand, within HMPREF1058_RS10345 at 689.564 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.577 kb on - strand, within HMPREF1058_RS10345 at 689.751 kb on - strand at 689.751 kb on - strand at 689.762 kb on - strand at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.879 kb on + strand, within HMPREF1058_RS10340 at 689.898 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.052 kb on + strand, within HMPREF1058_RS10340 at 690.096 kb on + strand, within HMPREF1058_RS10340 at 690.140 kb on - strand, within HMPREF1058_RS10340 at 690.198 kb on + strand, within HMPREF1058_RS10340 at 690.304 kb on - strand, within HMPREF1058_RS10340 at 690.541 kb on - strand, within HMPREF1058_RS10335 at 690.565 kb on + strand, within HMPREF1058_RS10335 at 690.566 kb on - strand, within HMPREF1058_RS10335 at 690.868 kb on - strand, within HMPREF1058_RS10335 at 690.955 kb on + strand, within HMPREF1058_RS10335 at 690.980 kb on + strand at 691.253 kb on - strand at 691.253 kb on - strand at 691.337 kb on - strand at 691.337 kb on - strand at 691.455 kb on - strand, within HMPREF1058_RS10330 at 691.482 kb on - strand, within HMPREF1058_RS10330 at 691.509 kb on - strand, within HMPREF1058_RS10330 at 691.599 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.688 kb on - strand, within HMPREF1058_RS10330 at 691.777 kb on - strand at 691.843 kb on - strand, within HMPREF1058_RS21615 at 691.889 kb on - strand, within HMPREF1058_RS21615 at 691.934 kb on - strand at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.987 kb on + strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325 at 691.988 kb on - strand, within HMPREF1058_RS10325
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 689,447 + HMPREF1058_RS10345 0.75 +0.5 689,456 + HMPREF1058_RS10345 0.75 +0.2 689,457 - HMPREF1058_RS10345 0.75 -3.5 689,457 - HMPREF1058_RS10345 0.75 +2.3 689,563 + HMPREF1058_RS10345 0.84 -0.0 689,564 - HMPREF1058_RS10345 0.84 -0.5 689,577 - HMPREF1058_RS10345 0.85 -1.5 689,577 - HMPREF1058_RS10345 0.85 -1.3 689,751 - +0.4 689,751 - -0.0 689,762 - -0.5 689,879 + HMPREF1058_RS10340 0.16 +0.6 689,879 + HMPREF1058_RS10340 0.16 -1.1 689,879 + HMPREF1058_RS10340 0.16 -2.0 689,898 + HMPREF1058_RS10340 0.19 -1.7 690,052 + HMPREF1058_RS10340 0.43 -0.8 690,052 + HMPREF1058_RS10340 0.43 -0.3 690,096 + HMPREF1058_RS10340 0.50 +0.9 690,140 - HMPREF1058_RS10340 0.57 -0.3 690,198 + HMPREF1058_RS10340 0.66 +0.9 690,304 - HMPREF1058_RS10340 0.82 -0.6 690,541 - HMPREF1058_RS10335 0.19 -1.3 690,565 + HMPREF1058_RS10335 0.23 -1.6 690,566 - HMPREF1058_RS10335 0.23 -1.3 690,868 - HMPREF1058_RS10335 0.74 -3.0 690,955 + HMPREF1058_RS10335 0.89 -3.4 690,980 + -1.7 691,253 - +0.6 691,253 - -0.8 691,337 - -0.5 691,337 - -3.6 691,455 - HMPREF1058_RS10330 0.16 -0.5 691,482 - HMPREF1058_RS10330 0.23 -0.5 691,509 - HMPREF1058_RS10330 0.30 +0.7 691,599 - HMPREF1058_RS10330 0.55 +1.3 691,688 - HMPREF1058_RS10330 0.79 +0.5 691,688 - HMPREF1058_RS10330 0.79 -0.0 691,777 - -0.1 691,843 - HMPREF1058_RS21615 0.54 +0.8 691,889 - HMPREF1058_RS21615 0.87 +0.1 691,934 - -1.0 691,987 + HMPREF1058_RS10325 0.16 -4.2 691,987 + HMPREF1058_RS10325 0.16 -3.4 691,988 - HMPREF1058_RS10325 0.16 -0.3 691,988 - HMPREF1058_RS10325 0.16 -0.8
Or see this region's nucleotide sequence