Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10335

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10345 and HMPREF1058_RS10340 are separated by 13 nucleotidesHMPREF1058_RS10340 and HMPREF1058_RS10335 are separated by 11 nucleotidesHMPREF1058_RS10335 and HMPREF1058_RS10330 are separated by 378 nucleotidesHMPREF1058_RS10330 and HMPREF1058_RS21615 are separated by 3 nucleotidesHMPREF1058_RS21615 and HMPREF1058_RS10325 are separated by 41 nucleotides HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759 _RS10345 HMPREF1058_RS10340: HMPREF1058_RS10340 - hypothetical protein, at 689,773 to 690,420 _RS10340 HMPREF1058_RS10335: HMPREF1058_RS10335 - hypothetical protein, at 690,432 to 691,019 _RS10335 HMPREF1058_RS10330: HMPREF1058_RS10330 - hypothetical protein, at 691,398 to 691,763 _RS10330 HMPREF1058_RS21615: HMPREF1058_RS21615 - hypothetical protein, at 691,767 to 691,907 _RS21615 HMPREF1058_RS10325: HMPREF1058_RS10325 - hypothetical protein, at 691,949 to 692,188 _RS10325 Position (kb) 690 691 692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 689.447 kb on + strand, within HMPREF1058_RS10345at 689.456 kb on + strand, within HMPREF1058_RS10345at 689.457 kb on - strand, within HMPREF1058_RS10345at 689.457 kb on - strand, within HMPREF1058_RS10345at 689.563 kb on + strand, within HMPREF1058_RS10345at 689.564 kb on - strand, within HMPREF1058_RS10345at 689.577 kb on - strand, within HMPREF1058_RS10345at 689.577 kb on - strand, within HMPREF1058_RS10345at 689.751 kb on - strandat 689.751 kb on - strandat 689.762 kb on - strandat 689.879 kb on + strand, within HMPREF1058_RS10340at 689.879 kb on + strand, within HMPREF1058_RS10340at 689.879 kb on + strand, within HMPREF1058_RS10340at 689.898 kb on + strand, within HMPREF1058_RS10340at 690.052 kb on + strand, within HMPREF1058_RS10340at 690.052 kb on + strand, within HMPREF1058_RS10340at 690.096 kb on + strand, within HMPREF1058_RS10340at 690.140 kb on - strand, within HMPREF1058_RS10340at 690.198 kb on + strand, within HMPREF1058_RS10340at 690.304 kb on - strand, within HMPREF1058_RS10340at 690.541 kb on - strand, within HMPREF1058_RS10335at 690.565 kb on + strand, within HMPREF1058_RS10335at 690.566 kb on - strand, within HMPREF1058_RS10335at 690.868 kb on - strand, within HMPREF1058_RS10335at 690.955 kb on + strand, within HMPREF1058_RS10335at 690.980 kb on + strandat 691.253 kb on - strandat 691.253 kb on - strandat 691.337 kb on - strandat 691.337 kb on - strandat 691.455 kb on - strand, within HMPREF1058_RS10330at 691.482 kb on - strand, within HMPREF1058_RS10330at 691.509 kb on - strand, within HMPREF1058_RS10330at 691.599 kb on - strand, within HMPREF1058_RS10330at 691.688 kb on - strand, within HMPREF1058_RS10330at 691.688 kb on - strand, within HMPREF1058_RS10330at 691.777 kb on - strandat 691.843 kb on - strand, within HMPREF1058_RS21615at 691.889 kb on - strand, within HMPREF1058_RS21615at 691.934 kb on - strandat 691.987 kb on + strand, within HMPREF1058_RS10325at 691.987 kb on + strand, within HMPREF1058_RS10325at 691.988 kb on - strand, within HMPREF1058_RS10325at 691.988 kb on - strand, within HMPREF1058_RS10325

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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689,447 + HMPREF1058_RS10345 0.75 +0.5
689,456 + HMPREF1058_RS10345 0.75 +0.2
689,457 - HMPREF1058_RS10345 0.75 -3.5
689,457 - HMPREF1058_RS10345 0.75 +2.3
689,563 + HMPREF1058_RS10345 0.84 -0.0
689,564 - HMPREF1058_RS10345 0.84 -0.5
689,577 - HMPREF1058_RS10345 0.85 -1.5
689,577 - HMPREF1058_RS10345 0.85 -1.3
689,751 - +0.4
689,751 - -0.0
689,762 - -0.5
689,879 + HMPREF1058_RS10340 0.16 +0.6
689,879 + HMPREF1058_RS10340 0.16 -1.1
689,879 + HMPREF1058_RS10340 0.16 -2.0
689,898 + HMPREF1058_RS10340 0.19 -1.7
690,052 + HMPREF1058_RS10340 0.43 -0.8
690,052 + HMPREF1058_RS10340 0.43 -0.3
690,096 + HMPREF1058_RS10340 0.50 +0.9
690,140 - HMPREF1058_RS10340 0.57 -0.3
690,198 + HMPREF1058_RS10340 0.66 +0.9
690,304 - HMPREF1058_RS10340 0.82 -0.6
690,541 - HMPREF1058_RS10335 0.19 -1.3
690,565 + HMPREF1058_RS10335 0.23 -1.6
690,566 - HMPREF1058_RS10335 0.23 -1.3
690,868 - HMPREF1058_RS10335 0.74 -3.0
690,955 + HMPREF1058_RS10335 0.89 -3.4
690,980 + -1.7
691,253 - +0.6
691,253 - -0.8
691,337 - -0.5
691,337 - -3.6
691,455 - HMPREF1058_RS10330 0.16 -0.5
691,482 - HMPREF1058_RS10330 0.23 -0.5
691,509 - HMPREF1058_RS10330 0.30 +0.7
691,599 - HMPREF1058_RS10330 0.55 +1.3
691,688 - HMPREF1058_RS10330 0.79 +0.5
691,688 - HMPREF1058_RS10330 0.79 -0.0
691,777 - -0.1
691,843 - HMPREF1058_RS21615 0.54 +0.8
691,889 - HMPREF1058_RS21615 0.87 +0.1
691,934 - -1.0
691,987 + HMPREF1058_RS10325 0.16 -4.2
691,987 + HMPREF1058_RS10325 0.16 -3.4
691,988 - HMPREF1058_RS10325 0.16 -0.3
691,988 - HMPREF1058_RS10325 0.16 -0.8

Or see this region's nucleotide sequence