Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09610

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09615 and HMPREF1058_RS09610 are separated by 44 nucleotidesHMPREF1058_RS09610 and HMPREF1058_RS09605 are separated by 1 nucleotidesHMPREF1058_RS09605 and HMPREF1058_RS09600 overlap by 20 nucleotides HMPREF1058_RS09615: HMPREF1058_RS09615 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 836,505 to 837,557 _RS09615 HMPREF1058_RS09610: HMPREF1058_RS09610 - peptide chain release factor N(5)-glutamine methyltransferase, at 837,602 to 838,438 _RS09610 HMPREF1058_RS09605: HMPREF1058_RS09605 - RecX family transcriptional regulator, at 838,440 to 838,925 _RS09605 HMPREF1058_RS09600: HMPREF1058_RS09600 - ComF family protein, at 838,906 to 839,601 _RS09600 Position (kb) 837 838 839Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 837.676 kb on + strandat 837.689 kb on - strand, within HMPREF1058_RS09610at 837.807 kb on - strand, within HMPREF1058_RS09610at 837.813 kb on - strand, within HMPREF1058_RS09610at 837.816 kb on + strand, within HMPREF1058_RS09610at 837.844 kb on + strand, within HMPREF1058_RS09610at 837.911 kb on - strand, within HMPREF1058_RS09610at 837.912 kb on + strand, within HMPREF1058_RS09610at 837.913 kb on - strand, within HMPREF1058_RS09610at 837.922 kb on + strand, within HMPREF1058_RS09610at 837.923 kb on - strand, within HMPREF1058_RS09610at 837.923 kb on - strand, within HMPREF1058_RS09610at 837.926 kb on + strand, within HMPREF1058_RS09610at 837.938 kb on - strand, within HMPREF1058_RS09610at 838.161 kb on - strand, within HMPREF1058_RS09610at 838.161 kb on - strand, within HMPREF1058_RS09610at 838.163 kb on - strand, within HMPREF1058_RS09610at 838.163 kb on - strand, within HMPREF1058_RS09610at 838.195 kb on + strand, within HMPREF1058_RS09610at 838.196 kb on - strand, within HMPREF1058_RS09610at 838.270 kb on - strand, within HMPREF1058_RS09610at 838.354 kb on + strand, within HMPREF1058_RS09610at 838.355 kb on - strandat 838.454 kb on - strandat 838.474 kb on - strandat 838.476 kb on - strandat 838.522 kb on + strand, within HMPREF1058_RS09605at 838.534 kb on + strand, within HMPREF1058_RS09605at 838.599 kb on + strand, within HMPREF1058_RS09605at 838.600 kb on - strand, within HMPREF1058_RS09605at 838.600 kb on - strand, within HMPREF1058_RS09605at 838.752 kb on + strand, within HMPREF1058_RS09605at 838.752 kb on + strand, within HMPREF1058_RS09605at 838.752 kb on + strand, within HMPREF1058_RS09605at 838.754 kb on + strand, within HMPREF1058_RS09605at 838.754 kb on + strand, within HMPREF1058_RS09605at 838.755 kb on - strand, within HMPREF1058_RS09605at 838.766 kb on - strand, within HMPREF1058_RS09605at 838.815 kb on + strand, within HMPREF1058_RS09605at 838.979 kb on + strand, within HMPREF1058_RS09600at 839.052 kb on + strand, within HMPREF1058_RS09600at 839.056 kb on - strand, within HMPREF1058_RS09600at 839.060 kb on + strand, within HMPREF1058_RS09600at 839.061 kb on - strand, within HMPREF1058_RS09600at 839.061 kb on - strand, within HMPREF1058_RS09600at 839.061 kb on - strand, within HMPREF1058_RS09600at 839.161 kb on + strand, within HMPREF1058_RS09600at 839.343 kb on + strand, within HMPREF1058_RS09600at 839.344 kb on - strand, within HMPREF1058_RS09600at 839.350 kb on - strand, within HMPREF1058_RS09600at 839.358 kb on + strand, within HMPREF1058_RS09600at 839.380 kb on + strand, within HMPREF1058_RS09600at 839.380 kb on + strand, within HMPREF1058_RS09600at 839.382 kb on + strand, within HMPREF1058_RS09600at 839.410 kb on + strand, within HMPREF1058_RS09600

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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837,676 + -1.5
837,689 - HMPREF1058_RS09610 0.10 +0.7
837,807 - HMPREF1058_RS09610 0.24 -4.0
837,813 - HMPREF1058_RS09610 0.25 -2.3
837,816 + HMPREF1058_RS09610 0.26 -0.4
837,844 + HMPREF1058_RS09610 0.29 -2.3
837,911 - HMPREF1058_RS09610 0.37 -2.5
837,912 + HMPREF1058_RS09610 0.37 -1.8
837,913 - HMPREF1058_RS09610 0.37 +0.1
837,922 + HMPREF1058_RS09610 0.38 -2.8
837,923 - HMPREF1058_RS09610 0.38 -2.5
837,923 - HMPREF1058_RS09610 0.38 -2.6
837,926 + HMPREF1058_RS09610 0.39 -3.7
837,938 - HMPREF1058_RS09610 0.40 -3.5
838,161 - HMPREF1058_RS09610 0.67 -1.5
838,161 - HMPREF1058_RS09610 0.67 -0.8
838,163 - HMPREF1058_RS09610 0.67 -2.0
838,163 - HMPREF1058_RS09610 0.67 -2.1
838,195 + HMPREF1058_RS09610 0.71 -0.7
838,196 - HMPREF1058_RS09610 0.71 -1.9
838,270 - HMPREF1058_RS09610 0.80 -2.5
838,354 + HMPREF1058_RS09610 0.90 -1.4
838,355 - -3.4
838,454 - +0.9
838,474 - +1.0
838,476 - +0.4
838,522 + HMPREF1058_RS09605 0.17 +0.8
838,534 + HMPREF1058_RS09605 0.19 +0.1
838,599 + HMPREF1058_RS09605 0.33 -0.1
838,600 - HMPREF1058_RS09605 0.33 +0.0
838,600 - HMPREF1058_RS09605 0.33 -0.0
838,752 + HMPREF1058_RS09605 0.64 -2.4
838,752 + HMPREF1058_RS09605 0.64 -1.9
838,752 + HMPREF1058_RS09605 0.64 -0.8
838,754 + HMPREF1058_RS09605 0.65 +0.1
838,754 + HMPREF1058_RS09605 0.65 +1.3
838,755 - HMPREF1058_RS09605 0.65 -1.4
838,766 - HMPREF1058_RS09605 0.67 +0.2
838,815 + HMPREF1058_RS09605 0.77 -0.5
838,979 + HMPREF1058_RS09600 0.10 +0.6
839,052 + HMPREF1058_RS09600 0.21 +2.9
839,056 - HMPREF1058_RS09600 0.22 -0.2
839,060 + HMPREF1058_RS09600 0.22 +0.8
839,061 - HMPREF1058_RS09600 0.22 -0.5
839,061 - HMPREF1058_RS09600 0.22 +0.3
839,061 - HMPREF1058_RS09600 0.22 -0.2
839,161 + HMPREF1058_RS09600 0.37 +0.3
839,343 + HMPREF1058_RS09600 0.63 -0.2
839,344 - HMPREF1058_RS09600 0.63 +0.6
839,350 - HMPREF1058_RS09600 0.64 -0.1
839,358 + HMPREF1058_RS09600 0.65 +0.6
839,380 + HMPREF1058_RS09600 0.68 +1.0
839,380 + HMPREF1058_RS09600 0.68 -0.1
839,382 + HMPREF1058_RS09600 0.68 -0.4
839,410 + HMPREF1058_RS09600 0.72 +0.8

Or see this region's nucleotide sequence