Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08855 and HMPREF1058_RS08850 are separated by 22 nucleotides HMPREF1058_RS08850 and HMPREF1058_RS08845 are separated by 107 nucleotides HMPREF1058_RS08845 and HMPREF1058_RS08840 are separated by 5 nucleotides HMPREF1058_RS08840 and HMPREF1058_RS08835 are separated by 13 nucleotides
HMPREF1058_RS08855: HMPREF1058_RS08855 - arginine repressor, at 1,014,132 to 1,014,608
_RS08855
HMPREF1058_RS08850: HMPREF1058_RS08850 - N-acetyltransferase, at 1,014,631 to 1,015,188
_RS08850
HMPREF1058_RS08845: HMPREF1058_RS08845 - argininosuccinate synthase, at 1,015,296 to 1,016,504
_RS08845
HMPREF1058_RS08840: HMPREF1058_RS08840 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,016,510 to 1,017,478
_RS08840
HMPREF1058_RS08835: HMPREF1058_RS08835 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,017,492 to 1,018,616
_RS08835
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 1014.317 kb on - strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.319 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.335 kb on + strand, within HMPREF1058_RS08855 at 1014.336 kb on - strand at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.431 kb on - strand, within HMPREF1058_RS08855 at 1014.468 kb on + strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.527 kb on + strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.593 kb on - strand at 1014.602 kb on - strand at 1014.606 kb on + strand at 1014.612 kb on - strand at 1014.616 kb on + strand at 1014.616 kb on + strand at 1014.617 kb on - strand at 1014.702 kb on + strand, within HMPREF1058_RS08850 at 1014.703 kb on - strand, within HMPREF1058_RS08850 at 1014.761 kb on - strand, within HMPREF1058_RS08850 at 1014.835 kb on - strand, within HMPREF1058_RS08850 at 1014.859 kb on + strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.860 kb on - strand, within HMPREF1058_RS08850 at 1014.863 kb on + strand, within HMPREF1058_RS08850 at 1014.922 kb on - strand, within HMPREF1058_RS08850 at 1014.974 kb on + strand, within HMPREF1058_RS08850 at 1015.125 kb on + strand, within HMPREF1058_RS08850 at 1015.141 kb on - strand at 1015.187 kb on - strand at 1015.245 kb on + strand at 1015.249 kb on + strand at 1015.318 kb on + strand at 1015.318 kb on + strand at 1015.318 kb on + strand at 1015.321 kb on + strand at 1015.322 kb on - strand at 1015.360 kb on + strand at 1015.361 kb on - strand at 1015.395 kb on + strand at 1015.396 kb on - strand at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.509 kb on + strand, within HMPREF1058_RS08845 at 1015.510 kb on - strand, within HMPREF1058_RS08845 at 1015.530 kb on + strand, within HMPREF1058_RS08845 at 1015.530 kb on + strand, within HMPREF1058_RS08845 at 1015.531 kb on - strand, within HMPREF1058_RS08845 at 1015.531 kb on - strand, within HMPREF1058_RS08845 at 1015.532 kb on + strand, within HMPREF1058_RS08845 at 1015.562 kb on + strand, within HMPREF1058_RS08845 at 1015.566 kb on + strand, within HMPREF1058_RS08845 at 1015.571 kb on + strand, within HMPREF1058_RS08845 at 1015.571 kb on + strand, within HMPREF1058_RS08845 at 1015.621 kb on - strand, within HMPREF1058_RS08845 at 1015.757 kb on - strand, within HMPREF1058_RS08845 at 1015.856 kb on + strand, within HMPREF1058_RS08845 at 1015.856 kb on + strand, within HMPREF1058_RS08845 at 1015.952 kb on + strand, within HMPREF1058_RS08845 at 1015.952 kb on + strand, within HMPREF1058_RS08845 at 1016.007 kb on - strand, within HMPREF1058_RS08845 at 1016.007 kb on - strand, within HMPREF1058_RS08845 at 1016.126 kb on + strand, within HMPREF1058_RS08845 at 1016.312 kb on + strand, within HMPREF1058_RS08845 at 1016.394 kb on + strand at 1016.456 kb on + strand at 1016.472 kb on + strand at 1016.475 kb on + strand at 1016.478 kb on - strand at 1016.478 kb on - strand at 1016.545 kb on + strand at 1016.575 kb on + strand at 1016.629 kb on + strand, within HMPREF1058_RS08840 at 1016.643 kb on + strand, within HMPREF1058_RS08840 at 1016.644 kb on - strand, within HMPREF1058_RS08840 at 1016.658 kb on - strand, within HMPREF1058_RS08840 at 1016.712 kb on + strand, within HMPREF1058_RS08840 at 1016.713 kb on - strand, within HMPREF1058_RS08840 at 1016.753 kb on - strand, within HMPREF1058_RS08840 at 1016.790 kb on + strand, within HMPREF1058_RS08840 at 1016.841 kb on - strand, within HMPREF1058_RS08840 at 1016.878 kb on + strand, within HMPREF1058_RS08840 at 1016.918 kb on - strand, within HMPREF1058_RS08840 at 1016.970 kb on + strand, within HMPREF1058_RS08840 at 1017.043 kb on + strand, within HMPREF1058_RS08840 at 1017.065 kb on - strand, within HMPREF1058_RS08840 at 1017.179 kb on - strand, within HMPREF1058_RS08840 at 1017.236 kb on + strand, within HMPREF1058_RS08840 at 1017.246 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.361 kb on + strand, within HMPREF1058_RS08840 at 1017.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,014,317 - HMPREF1058_RS08855 0.39 -5.0 1,014,318 + HMPREF1058_RS08855 0.39 -1.1 1,014,318 + HMPREF1058_RS08855 0.39 -2.5 1,014,318 + HMPREF1058_RS08855 0.39 -2.9 1,014,319 - HMPREF1058_RS08855 0.39 -3.2 1,014,323 - HMPREF1058_RS08855 0.40 -5.1 1,014,323 - HMPREF1058_RS08855 0.40 -3.7 1,014,335 + HMPREF1058_RS08855 0.43 -2.0 1,014,336 - -0.4 1,014,343 - HMPREF1058_RS08855 0.44 -6.6 1,014,343 - HMPREF1058_RS08855 0.44 -4.0 1,014,343 - HMPREF1058_RS08855 0.44 -2.5 1,014,431 - HMPREF1058_RS08855 0.63 -3.2 1,014,468 + HMPREF1058_RS08855 0.70 -2.0 1,014,510 - HMPREF1058_RS08855 0.79 -7.1 1,014,510 - HMPREF1058_RS08855 0.79 -6.4 1,014,527 + HMPREF1058_RS08855 0.83 -2.2 1,014,528 - HMPREF1058_RS08855 0.83 -6.1 1,014,528 - HMPREF1058_RS08855 0.83 -4.3 1,014,593 - -3.4 1,014,602 - -2.8 1,014,606 + +0.2 1,014,612 - -2.1 1,014,616 + -1.4 1,014,616 + -2.0 1,014,617 - -1.8 1,014,702 + HMPREF1058_RS08850 0.13 -4.5 1,014,703 - HMPREF1058_RS08850 0.13 -3.9 1,014,761 - HMPREF1058_RS08850 0.23 -5.5 1,014,835 - HMPREF1058_RS08850 0.37 -2.8 1,014,859 + HMPREF1058_RS08850 0.41 -2.4 1,014,860 - HMPREF1058_RS08850 0.41 -2.3 1,014,860 - HMPREF1058_RS08850 0.41 -3.2 1,014,860 - HMPREF1058_RS08850 0.41 -2.3 1,014,860 - HMPREF1058_RS08850 0.41 -1.8 1,014,860 - HMPREF1058_RS08850 0.41 -4.6 1,014,863 + HMPREF1058_RS08850 0.42 -4.5 1,014,922 - HMPREF1058_RS08850 0.52 -4.4 1,014,974 + HMPREF1058_RS08850 0.61 -4.5 1,015,125 + HMPREF1058_RS08850 0.89 +0.3 1,015,141 - -3.8 1,015,187 - +1.9 1,015,245 + -0.3 1,015,249 + -1.0 1,015,318 + -3.1 1,015,318 + -1.9 1,015,318 + -3.1 1,015,321 + -4.9 1,015,322 - -3.3 1,015,360 + -4.5 1,015,361 - -4.5 1,015,395 + -5.0 1,015,396 - -6.3 1,015,509 + HMPREF1058_RS08845 0.18 -2.6 1,015,509 + HMPREF1058_RS08845 0.18 -5.9 1,015,509 + HMPREF1058_RS08845 0.18 -4.4 1,015,510 - HMPREF1058_RS08845 0.18 -3.5 1,015,530 + HMPREF1058_RS08845 0.19 -4.7 1,015,530 + HMPREF1058_RS08845 0.19 -5.0 1,015,531 - HMPREF1058_RS08845 0.19 -2.7 1,015,531 - HMPREF1058_RS08845 0.19 -2.3 1,015,532 + HMPREF1058_RS08845 0.20 -4.1 1,015,562 + HMPREF1058_RS08845 0.22 -4.4 1,015,566 + HMPREF1058_RS08845 0.22 -4.4 1,015,571 + HMPREF1058_RS08845 0.23 -3.4 1,015,571 + HMPREF1058_RS08845 0.23 -4.3 1,015,621 - HMPREF1058_RS08845 0.27 -2.5 1,015,757 - HMPREF1058_RS08845 0.38 -0.7 1,015,856 + HMPREF1058_RS08845 0.46 -4.9 1,015,856 + HMPREF1058_RS08845 0.46 -4.9 1,015,952 + HMPREF1058_RS08845 0.54 -2.1 1,015,952 + HMPREF1058_RS08845 0.54 -2.2 1,016,007 - HMPREF1058_RS08845 0.59 -1.5 1,016,007 - HMPREF1058_RS08845 0.59 -2.3 1,016,126 + HMPREF1058_RS08845 0.69 -4.7 1,016,312 + HMPREF1058_RS08845 0.84 -4.6 1,016,394 + -1.5 1,016,456 + -3.9 1,016,472 + -5.2 1,016,475 + -1.7 1,016,478 - -1.1 1,016,478 - -4.1 1,016,545 + -4.7 1,016,575 + -4.9 1,016,629 + HMPREF1058_RS08840 0.12 -5.3 1,016,643 + HMPREF1058_RS08840 0.14 -4.1 1,016,644 - HMPREF1058_RS08840 0.14 -1.4 1,016,658 - HMPREF1058_RS08840 0.15 -2.8 1,016,712 + HMPREF1058_RS08840 0.21 -4.7 1,016,713 - HMPREF1058_RS08840 0.21 -3.4 1,016,753 - HMPREF1058_RS08840 0.25 -4.2 1,016,790 + HMPREF1058_RS08840 0.29 -3.4 1,016,841 - HMPREF1058_RS08840 0.34 -3.9 1,016,878 + HMPREF1058_RS08840 0.38 -4.6 1,016,918 - HMPREF1058_RS08840 0.42 -3.7 1,016,970 + HMPREF1058_RS08840 0.47 -3.6 1,017,043 + HMPREF1058_RS08840 0.55 -5.6 1,017,065 - HMPREF1058_RS08840 0.57 -4.8 1,017,179 - HMPREF1058_RS08840 0.69 -3.1 1,017,236 + HMPREF1058_RS08840 0.75 -3.9 1,017,246 - HMPREF1058_RS08840 0.76 -3.5 1,017,249 - HMPREF1058_RS08840 0.76 -4.0 1,017,249 - HMPREF1058_RS08840 0.76 -2.8 1,017,361 + HMPREF1058_RS08840 0.88 -3.4 1,017,415 + -5.8
Or see this region's nucleotide sequence