Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08845 and HMPREF1058_RS08840 are separated by 5 nucleotides HMPREF1058_RS08840 and HMPREF1058_RS08835 are separated by 13 nucleotides HMPREF1058_RS08835 and HMPREF1058_RS08830 are separated by 183 nucleotides
HMPREF1058_RS08845: HMPREF1058_RS08845 - argininosuccinate synthase, at 1,015,296 to 1,016,504
_RS08845
HMPREF1058_RS08840: HMPREF1058_RS08840 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,016,510 to 1,017,478
_RS08840
HMPREF1058_RS08835: HMPREF1058_RS08835 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,017,492 to 1,018,616
_RS08835
HMPREF1058_RS08830: HMPREF1058_RS08830 - pyrroline-5-carboxylate reductase, at 1,018,800 to 1,019,573
_RS08830
Position (kb)
1017
1018
1019 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1016.545 kb on + strand at 1016.575 kb on + strand at 1016.629 kb on + strand, within HMPREF1058_RS08840 at 1016.643 kb on + strand, within HMPREF1058_RS08840 at 1016.644 kb on - strand, within HMPREF1058_RS08840 at 1016.658 kb on - strand, within HMPREF1058_RS08840 at 1016.712 kb on + strand, within HMPREF1058_RS08840 at 1016.713 kb on - strand, within HMPREF1058_RS08840 at 1016.753 kb on - strand, within HMPREF1058_RS08840 at 1016.790 kb on + strand, within HMPREF1058_RS08840 at 1016.841 kb on - strand, within HMPREF1058_RS08840 at 1016.878 kb on + strand, within HMPREF1058_RS08840 at 1016.918 kb on - strand, within HMPREF1058_RS08840 at 1016.970 kb on + strand, within HMPREF1058_RS08840 at 1017.043 kb on + strand, within HMPREF1058_RS08840 at 1017.065 kb on - strand, within HMPREF1058_RS08840 at 1017.179 kb on - strand, within HMPREF1058_RS08840 at 1017.236 kb on + strand, within HMPREF1058_RS08840 at 1017.246 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.249 kb on - strand, within HMPREF1058_RS08840 at 1017.361 kb on + strand, within HMPREF1058_RS08840 at 1017.415 kb on + strand at 1017.508 kb on + strand at 1017.508 kb on + strand at 1017.508 kb on + strand at 1017.591 kb on + strand at 1017.637 kb on - strand, within HMPREF1058_RS08835 at 1017.637 kb on - strand, within HMPREF1058_RS08835 at 1017.704 kb on - strand, within HMPREF1058_RS08835 at 1017.704 kb on - strand, within HMPREF1058_RS08835 at 1017.909 kb on - strand, within HMPREF1058_RS08835 at 1017.942 kb on + strand, within HMPREF1058_RS08835 at 1017.942 kb on + strand, within HMPREF1058_RS08835 at 1017.943 kb on - strand, within HMPREF1058_RS08835 at 1017.961 kb on + strand, within HMPREF1058_RS08835 at 1017.961 kb on + strand, within HMPREF1058_RS08835 at 1017.962 kb on - strand, within HMPREF1058_RS08835 at 1018.121 kb on - strand, within HMPREF1058_RS08835 at 1018.264 kb on - strand, within HMPREF1058_RS08835 at 1018.565 kb on + strand at 1018.612 kb on + strand at 1018.740 kb on + strand at 1018.743 kb on + strand at 1018.774 kb on + strand at 1018.778 kb on + strand at 1018.780 kb on + strand at 1018.781 kb on - strand at 1018.781 kb on - strand at 1018.796 kb on + strand at 1018.800 kb on - strand at 1018.807 kb on + strand at 1018.869 kb on - strand at 1019.076 kb on - strand, within HMPREF1058_RS08830 at 1019.117 kb on - strand, within HMPREF1058_RS08830 at 1019.135 kb on - strand, within HMPREF1058_RS08830 at 1019.249 kb on - strand, within HMPREF1058_RS08830 at 1019.265 kb on - strand, within HMPREF1058_RS08830 at 1019.332 kb on - strand, within HMPREF1058_RS08830 at 1019.345 kb on + strand, within HMPREF1058_RS08830 at 1019.346 kb on - strand, within HMPREF1058_RS08830 at 1019.445 kb on - strand, within HMPREF1058_RS08830 at 1019.464 kb on + strand, within HMPREF1058_RS08830 at 1019.464 kb on + strand, within HMPREF1058_RS08830 at 1019.489 kb on + strand, within HMPREF1058_RS08830
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,016,545 + -4.7 1,016,575 + -4.9 1,016,629 + HMPREF1058_RS08840 0.12 -5.3 1,016,643 + HMPREF1058_RS08840 0.14 -4.1 1,016,644 - HMPREF1058_RS08840 0.14 -1.4 1,016,658 - HMPREF1058_RS08840 0.15 -2.8 1,016,712 + HMPREF1058_RS08840 0.21 -4.7 1,016,713 - HMPREF1058_RS08840 0.21 -3.4 1,016,753 - HMPREF1058_RS08840 0.25 -4.2 1,016,790 + HMPREF1058_RS08840 0.29 -3.4 1,016,841 - HMPREF1058_RS08840 0.34 -3.9 1,016,878 + HMPREF1058_RS08840 0.38 -4.6 1,016,918 - HMPREF1058_RS08840 0.42 -3.7 1,016,970 + HMPREF1058_RS08840 0.47 -3.6 1,017,043 + HMPREF1058_RS08840 0.55 -5.6 1,017,065 - HMPREF1058_RS08840 0.57 -4.8 1,017,179 - HMPREF1058_RS08840 0.69 -3.1 1,017,236 + HMPREF1058_RS08840 0.75 -3.9 1,017,246 - HMPREF1058_RS08840 0.76 -3.5 1,017,249 - HMPREF1058_RS08840 0.76 -4.0 1,017,249 - HMPREF1058_RS08840 0.76 -2.8 1,017,361 + HMPREF1058_RS08840 0.88 -3.4 1,017,415 + -5.8 1,017,508 + -6.0 1,017,508 + -5.7 1,017,508 + -5.7 1,017,591 + -4.7 1,017,637 - HMPREF1058_RS08835 0.13 -3.8 1,017,637 - HMPREF1058_RS08835 0.13 -3.3 1,017,704 - HMPREF1058_RS08835 0.19 -4.5 1,017,704 - HMPREF1058_RS08835 0.19 -1.4 1,017,909 - HMPREF1058_RS08835 0.37 -2.9 1,017,942 + HMPREF1058_RS08835 0.40 -1.3 1,017,942 + HMPREF1058_RS08835 0.40 -6.2 1,017,943 - HMPREF1058_RS08835 0.40 -4.7 1,017,961 + HMPREF1058_RS08835 0.42 -2.7 1,017,961 + HMPREF1058_RS08835 0.42 -4.5 1,017,962 - HMPREF1058_RS08835 0.42 -1.4 1,018,121 - HMPREF1058_RS08835 0.56 -4.5 1,018,264 - HMPREF1058_RS08835 0.69 -3.7 1,018,565 + -1.9 1,018,612 + +1.9 1,018,740 + -0.8 1,018,743 + -0.6 1,018,774 + +0.2 1,018,778 + +1.8 1,018,780 + -0.9 1,018,781 - -4.5 1,018,781 - -2.0 1,018,796 + -2.3 1,018,800 - -1.3 1,018,807 + -2.6 1,018,869 - -4.9 1,019,076 - HMPREF1058_RS08830 0.36 -5.8 1,019,117 - HMPREF1058_RS08830 0.41 -4.4 1,019,135 - HMPREF1058_RS08830 0.43 -4.9 1,019,249 - HMPREF1058_RS08830 0.58 -3.1 1,019,265 - HMPREF1058_RS08830 0.60 -4.6 1,019,332 - HMPREF1058_RS08830 0.69 -1.8 1,019,345 + HMPREF1058_RS08830 0.70 -1.3 1,019,346 - HMPREF1058_RS08830 0.71 -5.9 1,019,445 - HMPREF1058_RS08830 0.83 -1.5 1,019,464 + HMPREF1058_RS08830 0.86 -7.3 1,019,464 + HMPREF1058_RS08830 0.86 -2.8 1,019,489 + HMPREF1058_RS08830 0.89 -3.8
Or see this region's nucleotide sequence