Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08835 and HMPREF1058_RS08830 are separated by 183 nucleotides HMPREF1058_RS08830 and HMPREF1058_RS08825 are separated by 182 nucleotides
HMPREF1058_RS08835: HMPREF1058_RS08835 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 1,017,492 to 1,018,616
_RS08835
HMPREF1058_RS08830: HMPREF1058_RS08830 - pyrroline-5-carboxylate reductase, at 1,018,800 to 1,019,573
_RS08830
HMPREF1058_RS08825: HMPREF1058_RS08825 - helix-turn-helix domain-containing protein, at 1,019,756 to 1,020,646
_RS08825
Position (kb)
1018
1019
1020 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1017.909 kb on - strand, within HMPREF1058_RS08835 at 1017.942 kb on + strand, within HMPREF1058_RS08835 at 1017.942 kb on + strand, within HMPREF1058_RS08835 at 1017.943 kb on - strand, within HMPREF1058_RS08835 at 1017.961 kb on + strand, within HMPREF1058_RS08835 at 1017.961 kb on + strand, within HMPREF1058_RS08835 at 1017.962 kb on - strand, within HMPREF1058_RS08835 at 1018.121 kb on - strand, within HMPREF1058_RS08835 at 1018.264 kb on - strand, within HMPREF1058_RS08835 at 1018.565 kb on + strand at 1018.612 kb on + strand at 1018.740 kb on + strand at 1018.743 kb on + strand at 1018.774 kb on + strand at 1018.778 kb on + strand at 1018.780 kb on + strand at 1018.781 kb on - strand at 1018.781 kb on - strand at 1018.796 kb on + strand at 1018.800 kb on - strand at 1018.807 kb on + strand at 1018.869 kb on - strand at 1019.076 kb on - strand, within HMPREF1058_RS08830 at 1019.117 kb on - strand, within HMPREF1058_RS08830 at 1019.135 kb on - strand, within HMPREF1058_RS08830 at 1019.249 kb on - strand, within HMPREF1058_RS08830 at 1019.265 kb on - strand, within HMPREF1058_RS08830 at 1019.332 kb on - strand, within HMPREF1058_RS08830 at 1019.345 kb on + strand, within HMPREF1058_RS08830 at 1019.346 kb on - strand, within HMPREF1058_RS08830 at 1019.445 kb on - strand, within HMPREF1058_RS08830 at 1019.464 kb on + strand, within HMPREF1058_RS08830 at 1019.464 kb on + strand, within HMPREF1058_RS08830 at 1019.489 kb on + strand, within HMPREF1058_RS08830 at 1019.651 kb on + strand at 1019.723 kb on + strand at 1019.725 kb on + strand at 1019.739 kb on + strand at 1019.739 kb on + strand at 1019.740 kb on - strand at 1019.813 kb on - strand at 1019.853 kb on + strand, within HMPREF1058_RS08825 at 1019.854 kb on - strand, within HMPREF1058_RS08825 at 1019.854 kb on - strand, within HMPREF1058_RS08825 at 1019.857 kb on + strand, within HMPREF1058_RS08825 at 1019.858 kb on - strand, within HMPREF1058_RS08825 at 1019.860 kb on - strand, within HMPREF1058_RS08825 at 1019.882 kb on + strand, within HMPREF1058_RS08825 at 1019.882 kb on + strand, within HMPREF1058_RS08825 at 1019.883 kb on - strand, within HMPREF1058_RS08825 at 1019.884 kb on + strand, within HMPREF1058_RS08825 at 1019.885 kb on - strand, within HMPREF1058_RS08825 at 1019.937 kb on + strand, within HMPREF1058_RS08825 at 1019.938 kb on - strand, within HMPREF1058_RS08825 at 1019.997 kb on - strand, within HMPREF1058_RS08825 at 1019.998 kb on + strand, within HMPREF1058_RS08825 at 1020.201 kb on - strand, within HMPREF1058_RS08825 at 1020.210 kb on + strand, within HMPREF1058_RS08825 at 1020.286 kb on + strand, within HMPREF1058_RS08825 at 1020.308 kb on - strand, within HMPREF1058_RS08825 at 1020.397 kb on + strand, within HMPREF1058_RS08825 at 1020.398 kb on - strand, within HMPREF1058_RS08825 at 1020.398 kb on - strand, within HMPREF1058_RS08825 at 1020.436 kb on + strand, within HMPREF1058_RS08825 at 1020.436 kb on + strand, within HMPREF1058_RS08825 at 1020.437 kb on - strand, within HMPREF1058_RS08825 at 1020.571 kb on + strand at 1020.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,017,909 - HMPREF1058_RS08835 0.37 -2.9 1,017,942 + HMPREF1058_RS08835 0.40 -1.3 1,017,942 + HMPREF1058_RS08835 0.40 -6.2 1,017,943 - HMPREF1058_RS08835 0.40 -4.7 1,017,961 + HMPREF1058_RS08835 0.42 -2.7 1,017,961 + HMPREF1058_RS08835 0.42 -4.5 1,017,962 - HMPREF1058_RS08835 0.42 -1.4 1,018,121 - HMPREF1058_RS08835 0.56 -4.5 1,018,264 - HMPREF1058_RS08835 0.69 -3.7 1,018,565 + -1.9 1,018,612 + +1.9 1,018,740 + -0.8 1,018,743 + -0.6 1,018,774 + +0.2 1,018,778 + +1.8 1,018,780 + -0.9 1,018,781 - -4.5 1,018,781 - -2.0 1,018,796 + -2.3 1,018,800 - -1.3 1,018,807 + -2.6 1,018,869 - -4.9 1,019,076 - HMPREF1058_RS08830 0.36 -5.8 1,019,117 - HMPREF1058_RS08830 0.41 -4.4 1,019,135 - HMPREF1058_RS08830 0.43 -4.9 1,019,249 - HMPREF1058_RS08830 0.58 -3.1 1,019,265 - HMPREF1058_RS08830 0.60 -4.6 1,019,332 - HMPREF1058_RS08830 0.69 -1.8 1,019,345 + HMPREF1058_RS08830 0.70 -1.3 1,019,346 - HMPREF1058_RS08830 0.71 -5.9 1,019,445 - HMPREF1058_RS08830 0.83 -1.5 1,019,464 + HMPREF1058_RS08830 0.86 -7.3 1,019,464 + HMPREF1058_RS08830 0.86 -2.8 1,019,489 + HMPREF1058_RS08830 0.89 -3.8 1,019,651 + -1.0 1,019,723 + +0.2 1,019,725 + +0.6 1,019,739 + -0.3 1,019,739 + -0.7 1,019,740 - -1.4 1,019,813 - -0.4 1,019,853 + HMPREF1058_RS08825 0.11 -1.7 1,019,854 - HMPREF1058_RS08825 0.11 -0.0 1,019,854 - HMPREF1058_RS08825 0.11 +0.6 1,019,857 + HMPREF1058_RS08825 0.11 +0.1 1,019,858 - HMPREF1058_RS08825 0.11 +1.8 1,019,860 - HMPREF1058_RS08825 0.12 +0.8 1,019,882 + HMPREF1058_RS08825 0.14 -1.7 1,019,882 + HMPREF1058_RS08825 0.14 -0.2 1,019,883 - HMPREF1058_RS08825 0.14 -1.0 1,019,884 + HMPREF1058_RS08825 0.14 +0.6 1,019,885 - HMPREF1058_RS08825 0.14 -0.8 1,019,937 + HMPREF1058_RS08825 0.20 -1.1 1,019,938 - HMPREF1058_RS08825 0.20 -0.9 1,019,997 - HMPREF1058_RS08825 0.27 +1.9 1,019,998 + HMPREF1058_RS08825 0.27 -0.0 1,020,201 - HMPREF1058_RS08825 0.50 -1.7 1,020,210 + HMPREF1058_RS08825 0.51 -0.5 1,020,286 + HMPREF1058_RS08825 0.59 +0.2 1,020,308 - HMPREF1058_RS08825 0.62 -0.2 1,020,397 + HMPREF1058_RS08825 0.72 +0.5 1,020,398 - HMPREF1058_RS08825 0.72 -1.3 1,020,398 - HMPREF1058_RS08825 0.72 +1.4 1,020,436 + HMPREF1058_RS08825 0.76 +1.0 1,020,436 + HMPREF1058_RS08825 0.76 -0.8 1,020,437 - HMPREF1058_RS08825 0.76 +0.1 1,020,571 + -0.9 1,020,572 - +0.2
Or see this region's nucleotide sequence