Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08330 and HMPREF1058_RS08325 are separated by 118 nucleotides HMPREF1058_RS08325 and HMPREF1058_RS08320 overlap by 4 nucleotides HMPREF1058_RS08320 and HMPREF1058_RS08315 are separated by 6 nucleotides
HMPREF1058_RS08330: HMPREF1058_RS08330 - NAD kinase, at 1,191,596 to 1,192,468
_RS08330
HMPREF1058_RS08325: HMPREF1058_RS08325 - pyridoxine 5'-phosphate synthase, at 1,192,587 to 1,193,303
_RS08325
HMPREF1058_RS08320: HMPREF1058_RS08320 - MotA/TolQ/ExbB proton channel family protein, at 1,193,300 to 1,194,016
_RS08320
HMPREF1058_RS08315: HMPREF1058_RS08315 - biopolymer transporter ExbD, at 1,194,023 to 1,194,442
_RS08315
Position (kb) 1192
1193
1194 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1191.591 kb on + strand at 1191.592 kb on - strand at 1191.592 kb on - strand at 1191.605 kb on - strand at 1192.489 kb on - strand at 1192.576 kb on - strand at 1192.598 kb on - strand at 1192.598 kb on - strand at 1192.603 kb on + strand at 1192.604 kb on - strand at 1192.610 kb on - strand at 1192.712 kb on - strand, within HMPREF1058_RS08325 at 1192.883 kb on + strand, within HMPREF1058_RS08325 at 1193.002 kb on + strand, within HMPREF1058_RS08325 at 1193.003 kb on - strand, within HMPREF1058_RS08325 at 1193.103 kb on - strand, within HMPREF1058_RS08325 at 1193.104 kb on + strand, within HMPREF1058_RS08325 at 1193.183 kb on + strand, within HMPREF1058_RS08325 at 1193.250 kb on + strand at 1193.250 kb on + strand at 1193.251 kb on - strand at 1193.270 kb on + strand at 1193.282 kb on + strand at 1193.472 kb on - strand, within HMPREF1058_RS08320 at 1193.530 kb on + strand, within HMPREF1058_RS08320 at 1193.549 kb on + strand, within HMPREF1058_RS08320 at 1193.581 kb on - strand, within HMPREF1058_RS08320 at 1193.585 kb on + strand, within HMPREF1058_RS08320 at 1193.635 kb on + strand, within HMPREF1058_RS08320 at 1193.694 kb on + strand, within HMPREF1058_RS08320 at 1193.694 kb on + strand, within HMPREF1058_RS08320 at 1193.695 kb on - strand, within HMPREF1058_RS08320 at 1193.695 kb on - strand, within HMPREF1058_RS08320 at 1193.855 kb on - strand, within HMPREF1058_RS08320 at 1193.872 kb on + strand, within HMPREF1058_RS08320 at 1193.925 kb on - strand, within HMPREF1058_RS08320 at 1193.925 kb on - strand, within HMPREF1058_RS08320 at 1194.014 kb on + strand at 1194.017 kb on + strand at 1194.056 kb on - strand at 1194.088 kb on - strand, within HMPREF1058_RS08315 at 1194.088 kb on - strand, within HMPREF1058_RS08315 at 1194.150 kb on + strand, within HMPREF1058_RS08315 at 1194.150 kb on + strand, within HMPREF1058_RS08315 at 1194.201 kb on + strand, within HMPREF1058_RS08315 at 1194.228 kb on - strand, within HMPREF1058_RS08315
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 1,191,591 + -0.1 1,191,592 - -2.3 1,191,592 - +0.5 1,191,605 - -0.2 1,192,489 - -0.8 1,192,576 - -0.7 1,192,598 - -2.7 1,192,598 - -3.9 1,192,603 + -4.2 1,192,604 - -2.3 1,192,610 - -3.5 1,192,712 - HMPREF1058_RS08325 0.17 -1.5 1,192,883 + HMPREF1058_RS08325 0.41 -5.0 1,193,002 + HMPREF1058_RS08325 0.58 -5.2 1,193,003 - HMPREF1058_RS08325 0.58 -4.4 1,193,103 - HMPREF1058_RS08325 0.72 -5.5 1,193,104 + HMPREF1058_RS08325 0.72 -3.4 1,193,183 + HMPREF1058_RS08325 0.83 -4.3 1,193,250 + -3.5 1,193,250 + -5.4 1,193,251 - -3.2 1,193,270 + -3.7 1,193,282 + -5.0 1,193,472 - HMPREF1058_RS08320 0.24 -1.4 1,193,530 + HMPREF1058_RS08320 0.32 -0.5 1,193,549 + HMPREF1058_RS08320 0.35 -0.6 1,193,581 - HMPREF1058_RS08320 0.39 -1.2 1,193,585 + HMPREF1058_RS08320 0.40 -1.2 1,193,635 + HMPREF1058_RS08320 0.47 -0.6 1,193,694 + HMPREF1058_RS08320 0.55 -0.5 1,193,694 + HMPREF1058_RS08320 0.55 -1.3 1,193,695 - HMPREF1058_RS08320 0.55 -1.9 1,193,695 - HMPREF1058_RS08320 0.55 -0.8 1,193,855 - HMPREF1058_RS08320 0.77 -1.3 1,193,872 + HMPREF1058_RS08320 0.80 -1.1 1,193,925 - HMPREF1058_RS08320 0.87 -0.1 1,193,925 - HMPREF1058_RS08320 0.87 -2.3 1,194,014 + -1.3 1,194,017 + -1.3 1,194,056 - +0.2 1,194,088 - HMPREF1058_RS08315 0.15 -1.3 1,194,088 - HMPREF1058_RS08315 0.15 -0.9 1,194,150 + HMPREF1058_RS08315 0.30 -0.4 1,194,150 + HMPREF1058_RS08315 0.30 -0.6 1,194,201 + HMPREF1058_RS08315 0.42 -1.9 1,194,228 - HMPREF1058_RS08315 0.49 -1.4
Or see this region's nucleotide sequence