Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07440

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07450 and HMPREF1058_RS07445 are separated by 89 nucleotidesHMPREF1058_RS07445 and HMPREF1058_RS07440 are separated by 117 nucleotidesHMPREF1058_RS07440 and HMPREF1058_RS07435 are separated by 202 nucleotidesHMPREF1058_RS07435 and HMPREF1058_RS07430 are separated by 311 nucleotides HMPREF1058_RS07450: HMPREF1058_RS07450 - LPS-assembly protein LptD, at 220,960 to 223,695 _RS07450 HMPREF1058_RS07445: HMPREF1058_RS07445 - uracil-DNA glycosylase, at 223,785 to 224,447 _RS07445 HMPREF1058_RS07440: HMPREF1058_RS07440 - aspartate--ammonia ligase, at 224,565 to 225,605 _RS07440 HMPREF1058_RS07435: HMPREF1058_RS07435 - tRNA-Arg, at 225,808 to 225,879 _RS07435 HMPREF1058_RS07430: HMPREF1058_RS07430 - TonB-dependent receptor, at 226,191 to 229,466 _RS07430 Position (kb) 224 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 223.694 kb on - strandat 223.780 kb on + strandat 223.781 kb on - strandat 223.867 kb on + strand, within HMPREF1058_RS07445at 223.867 kb on + strand, within HMPREF1058_RS07445at 223.968 kb on + strand, within HMPREF1058_RS07445at 223.969 kb on - strand, within HMPREF1058_RS07445at 223.974 kb on - strand, within HMPREF1058_RS07445at 224.016 kb on - strand, within HMPREF1058_RS07445at 224.088 kb on + strand, within HMPREF1058_RS07445at 224.088 kb on + strand, within HMPREF1058_RS07445at 224.172 kb on - strand, within HMPREF1058_RS07445at 224.316 kb on - strand, within HMPREF1058_RS07445at 224.336 kb on + strand, within HMPREF1058_RS07445at 224.361 kb on + strand, within HMPREF1058_RS07445at 224.433 kb on + strandat 224.434 kb on - strandat 224.460 kb on - strandat 224.509 kb on - strandat 224.560 kb on + strandat 224.563 kb on - strandat 224.621 kb on + strandat 224.640 kb on + strandat 224.686 kb on - strand, within HMPREF1058_RS07440at 224.686 kb on - strand, within HMPREF1058_RS07440at 224.860 kb on - strand, within HMPREF1058_RS07440at 224.910 kb on - strandat 224.972 kb on + strand, within HMPREF1058_RS07440at 224.977 kb on - strand, within HMPREF1058_RS07440at 224.977 kb on - strand, within HMPREF1058_RS07440at 224.981 kb on + strand, within HMPREF1058_RS07440at 224.982 kb on - strand, within HMPREF1058_RS07440at 224.985 kb on + strand, within HMPREF1058_RS07440at 225.044 kb on - strand, within HMPREF1058_RS07440at 225.044 kb on - strandat 225.123 kb on + strand, within HMPREF1058_RS07440at 225.128 kb on + strand, within HMPREF1058_RS07440at 225.129 kb on - strand, within HMPREF1058_RS07440at 225.159 kb on - strand, within HMPREF1058_RS07440at 225.168 kb on + strand, within HMPREF1058_RS07440at 225.168 kb on + strand, within HMPREF1058_RS07440at 225.169 kb on - strand, within HMPREF1058_RS07440at 225.234 kb on + strand, within HMPREF1058_RS07440at 225.239 kb on - strand, within HMPREF1058_RS07440at 225.239 kb on - strand, within HMPREF1058_RS07440at 225.239 kb on - strand, within HMPREF1058_RS07440at 225.240 kb on + strand, within HMPREF1058_RS07440at 225.240 kb on + strand, within HMPREF1058_RS07440at 225.317 kb on + strand, within HMPREF1058_RS07440at 225.322 kb on + strand, within HMPREF1058_RS07440at 225.395 kb on + strand, within HMPREF1058_RS07440at 225.493 kb on - strandat 225.577 kb on + strandat 225.620 kb on - strandat 225.704 kb on + strandat 225.928 kb on + strandat 225.930 kb on + strandat 226.042 kb on + strandat 226.062 kb on - strandat 226.083 kb on - strandat 226.216 kb on + strandat 226.276 kb on + strandat 226.276 kb on + strandat 226.276 kb on + strandat 226.365 kb on - strandat 226.365 kb on - strandat 226.405 kb on - strandat 226.406 kb on + strandat 226.407 kb on - strandat 226.408 kb on + strandat 226.409 kb on - strandat 226.452 kb on + strandat 226.570 kb on + strand, within HMPREF1058_RS07430at 226.573 kb on + strand, within HMPREF1058_RS07430at 226.586 kb on + strand, within HMPREF1058_RS07430

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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223,694 - -0.1
223,780 + -0.9
223,781 - -0.4
223,867 + HMPREF1058_RS07445 0.12 -0.8
223,867 + HMPREF1058_RS07445 0.12 -0.0
223,968 + HMPREF1058_RS07445 0.28 -1.6
223,969 - HMPREF1058_RS07445 0.28 -0.6
223,974 - HMPREF1058_RS07445 0.29 -0.8
224,016 - HMPREF1058_RS07445 0.35 +1.4
224,088 + HMPREF1058_RS07445 0.46 -0.0
224,088 + HMPREF1058_RS07445 0.46 +0.2
224,172 - HMPREF1058_RS07445 0.58 -1.4
224,316 - HMPREF1058_RS07445 0.80 +0.5
224,336 + HMPREF1058_RS07445 0.83 +0.2
224,361 + HMPREF1058_RS07445 0.87 +1.0
224,433 + +0.5
224,434 - -0.0
224,460 - +0.7
224,509 - +1.5
224,560 + -0.9
224,563 - +1.3
224,621 + -1.0
224,640 + -1.7
224,686 - HMPREF1058_RS07440 0.12 -3.1
224,686 - HMPREF1058_RS07440 0.12 -1.4
224,860 - HMPREF1058_RS07440 0.28 -0.4
224,910 - -1.1
224,972 + HMPREF1058_RS07440 0.39 -4.4
224,977 - HMPREF1058_RS07440 0.40 -3.3
224,977 - HMPREF1058_RS07440 0.40 -1.5
224,981 + HMPREF1058_RS07440 0.40 -2.5
224,982 - HMPREF1058_RS07440 0.40 -1.1
224,985 + HMPREF1058_RS07440 0.40 -1.3
225,044 - HMPREF1058_RS07440 0.46 -1.1
225,044 - -0.4
225,123 + HMPREF1058_RS07440 0.54 -1.8
225,128 + HMPREF1058_RS07440 0.54 -2.3
225,129 - HMPREF1058_RS07440 0.54 -0.8
225,159 - HMPREF1058_RS07440 0.57 -3.5
225,168 + HMPREF1058_RS07440 0.58 -0.6
225,168 + HMPREF1058_RS07440 0.58 +1.7
225,169 - HMPREF1058_RS07440 0.58 -1.0
225,234 + HMPREF1058_RS07440 0.64 -3.2
225,239 - HMPREF1058_RS07440 0.65 -1.9
225,239 - HMPREF1058_RS07440 0.65 -2.2
225,239 - HMPREF1058_RS07440 0.65 -2.3
225,240 + HMPREF1058_RS07440 0.65 -0.4
225,240 + HMPREF1058_RS07440 0.65 -2.2
225,317 + HMPREF1058_RS07440 0.72 -0.2
225,322 + HMPREF1058_RS07440 0.73 -3.6
225,395 + HMPREF1058_RS07440 0.80 -1.0
225,493 - -1.6
225,577 + -0.5
225,620 - -1.1
225,704 + -0.1
225,928 + +0.7
225,930 + +0.6
226,042 + +0.5
226,062 - -0.0
226,083 - -1.1
226,216 + +1.3
226,276 + +0.8
226,276 + -0.6
226,276 + +0.9
226,365 - +0.7
226,365 - +0.3
226,405 - -0.9
226,406 + -0.0
226,407 - +0.7
226,408 + +0.8
226,409 - +0.1
226,452 + -1.0
226,570 + HMPREF1058_RS07430 0.12 +0.6
226,573 + HMPREF1058_RS07430 0.12 +0.3
226,586 + HMPREF1058_RS07430 0.12 +0.9

Or see this region's nucleotide sequence