Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07200 and HMPREF1058_RS07195 overlap by 4 nucleotides HMPREF1058_RS07195 and HMPREF1058_RS07190 are separated by 12 nucleotides HMPREF1058_RS07190 and HMPREF1058_RS07185 are separated by 38 nucleotides
HMPREF1058_RS07200: HMPREF1058_RS07200 - tryptophan synthase subunit alpha, at 290,212 to 290,988
_RS07200
HMPREF1058_RS07195: HMPREF1058_RS07195 - phosphoribosylanthranilate isomerase, at 290,985 to 291,602
_RS07195
HMPREF1058_RS07190: HMPREF1058_RS07190 - indole-3-glycerol phosphate synthase TrpC, at 291,615 to 292,403
_RS07190
HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437
_RS07185
Position (kb) 291
292
293 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 290.723 kb on - strand, within HMPREF1058_RS07200 at 290.863 kb on - strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 291.015 kb on - strand at 291.173 kb on - strand, within HMPREF1058_RS07195 at 291.248 kb on - strand, within HMPREF1058_RS07195 at 291.257 kb on + strand, within HMPREF1058_RS07195 at 291.340 kb on - strand, within HMPREF1058_RS07195 at 291.384 kb on - strand, within HMPREF1058_RS07195 at 291.496 kb on + strand, within HMPREF1058_RS07195 at 291.589 kb on - strand at 291.638 kb on + strand at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.880 kb on + strand, within HMPREF1058_RS07190 at 291.881 kb on - strand, within HMPREF1058_RS07190 at 292.041 kb on + strand, within HMPREF1058_RS07190 at 292.042 kb on - strand, within HMPREF1058_RS07190 at 292.185 kb on - strand, within HMPREF1058_RS07190 at 292.393 kb on - strand at 292.393 kb on - strand at 292.557 kb on - strand at 292.557 kb on - strand, within HMPREF1058_RS07185 at 292.698 kb on - strand, within HMPREF1058_RS07185 at 292.834 kb on - strand, within HMPREF1058_RS07185 at 292.920 kb on - strand, within HMPREF1058_RS07185 at 292.924 kb on + strand, within HMPREF1058_RS07185 at 292.928 kb on + strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.995 kb on + strand, within HMPREF1058_RS07185 at 292.995 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 293.106 kb on + strand, within HMPREF1058_RS07185 at 293.164 kb on + strand, within HMPREF1058_RS07185 at 293.180 kb on - strand, within HMPREF1058_RS07185 at 293.237 kb on + strand, within HMPREF1058_RS07185 at 293.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 290,723 - HMPREF1058_RS07200 0.66 -4.5 290,863 - HMPREF1058_RS07200 0.84 -6.3 290,908 + HMPREF1058_RS07200 0.90 -5.1 290,908 + HMPREF1058_RS07200 0.90 -5.0 291,015 - -3.0 291,173 - HMPREF1058_RS07195 0.30 -4.6 291,248 - HMPREF1058_RS07195 0.43 -3.6 291,257 + HMPREF1058_RS07195 0.44 -3.2 291,340 - HMPREF1058_RS07195 0.57 -3.5 291,384 - HMPREF1058_RS07195 0.65 -1.8 291,496 + HMPREF1058_RS07195 0.83 -0.8 291,589 - -4.8 291,638 + -3.1 291,877 - HMPREF1058_RS07190 0.33 -0.5 291,877 - HMPREF1058_RS07190 0.33 -3.8 291,879 - HMPREF1058_RS07190 0.33 -4.5 291,879 - HMPREF1058_RS07190 0.33 -2.4 291,879 - HMPREF1058_RS07190 0.33 -6.0 291,880 + HMPREF1058_RS07190 0.34 -2.6 291,881 - HMPREF1058_RS07190 0.34 -4.1 292,041 + HMPREF1058_RS07190 0.54 -5.5 292,042 - HMPREF1058_RS07190 0.54 -4.2 292,185 - HMPREF1058_RS07190 0.72 -4.5 292,393 - -5.8 292,393 - -5.3 292,557 - -1.3 292,557 - HMPREF1058_RS07185 0.12 -3.8 292,698 - HMPREF1058_RS07185 0.26 -4.6 292,834 - HMPREF1058_RS07185 0.39 -7.2 292,920 - HMPREF1058_RS07185 0.48 -4.5 292,924 + HMPREF1058_RS07185 0.48 -2.1 292,928 + HMPREF1058_RS07185 0.49 -3.5 292,929 - HMPREF1058_RS07185 0.49 -5.1 292,929 - HMPREF1058_RS07185 0.49 -2.9 292,929 - HMPREF1058_RS07185 0.49 -6.3 292,995 + HMPREF1058_RS07185 0.56 -3.6 292,995 - HMPREF1058_RS07185 0.56 -1.8 292,996 - HMPREF1058_RS07185 0.56 -5.6 292,996 - HMPREF1058_RS07185 0.56 -4.9 293,106 + HMPREF1058_RS07185 0.67 -2.9 293,164 + HMPREF1058_RS07185 0.72 -2.6 293,180 - HMPREF1058_RS07185 0.74 -2.2 293,237 + HMPREF1058_RS07185 0.80 -3.6 293,346 + -4.6
Or see this region's nucleotide sequence