Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07195 and HMPREF1058_RS07190 are separated by 12 nucleotides HMPREF1058_RS07190 and HMPREF1058_RS07185 are separated by 38 nucleotides HMPREF1058_RS07185 and HMPREF1058_RS07180 are separated by 21 nucleotides HMPREF1058_RS07180 and HMPREF1058_RS07175 are separated by 12 nucleotides
HMPREF1058_RS07195: HMPREF1058_RS07195 - phosphoribosylanthranilate isomerase, at 290,985 to 291,602
_RS07195
HMPREF1058_RS07190: HMPREF1058_RS07190 - indole-3-glycerol phosphate synthase TrpC, at 291,615 to 292,403
_RS07190
HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437
_RS07185
HMPREF1058_RS07180: HMPREF1058_RS07180 - aminodeoxychorismate/anthranilate synthase component II, at 293,459 to 294,049
_RS07180
HMPREF1058_RS07175: HMPREF1058_RS07175 - anthranilate synthase component I family protein, at 294,062 to 295,462
_RS07175
Position (kb) 292
293
294 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 291.496 kb on + strand, within HMPREF1058_RS07195 at 291.589 kb on - strand at 291.638 kb on + strand at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.880 kb on + strand, within HMPREF1058_RS07190 at 291.881 kb on - strand, within HMPREF1058_RS07190 at 292.041 kb on + strand, within HMPREF1058_RS07190 at 292.042 kb on - strand, within HMPREF1058_RS07190 at 292.185 kb on - strand, within HMPREF1058_RS07190 at 292.393 kb on - strand at 292.393 kb on - strand at 292.557 kb on - strand at 292.557 kb on - strand, within HMPREF1058_RS07185 at 292.698 kb on - strand, within HMPREF1058_RS07185 at 292.834 kb on - strand, within HMPREF1058_RS07185 at 292.920 kb on - strand, within HMPREF1058_RS07185 at 292.924 kb on + strand, within HMPREF1058_RS07185 at 292.928 kb on + strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.929 kb on - strand, within HMPREF1058_RS07185 at 292.995 kb on + strand, within HMPREF1058_RS07185 at 292.995 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 292.996 kb on - strand, within HMPREF1058_RS07185 at 293.106 kb on + strand, within HMPREF1058_RS07185 at 293.164 kb on + strand, within HMPREF1058_RS07185 at 293.180 kb on - strand, within HMPREF1058_RS07185 at 293.237 kb on + strand, within HMPREF1058_RS07185 at 293.346 kb on + strand at 293.445 kb on - strand at 293.445 kb on - strand at 293.448 kb on + strand at 293.448 kb on + strand at 293.551 kb on + strand, within HMPREF1058_RS07180 at 293.686 kb on - strand, within HMPREF1058_RS07180 at 293.744 kb on + strand, within HMPREF1058_RS07180 at 293.745 kb on - strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.855 kb on - strand, within HMPREF1058_RS07180 at 293.960 kb on + strand, within HMPREF1058_RS07180 at 293.963 kb on + strand, within HMPREF1058_RS07180 at 294.014 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.039 kb on - strand at 294.125 kb on + strand at 294.148 kb on + strand at 294.149 kb on - strand at 294.153 kb on - strand at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.206 kb on - strand, within HMPREF1058_RS07175 at 294.317 kb on + strand, within HMPREF1058_RS07175 at 294.318 kb on - strand, within HMPREF1058_RS07175 at 294.361 kb on + strand, within HMPREF1058_RS07175 at 294.362 kb on - strand, within HMPREF1058_RS07175
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 291,496 + HMPREF1058_RS07195 0.83 -0.8 291,589 - -4.8 291,638 + -3.1 291,877 - HMPREF1058_RS07190 0.33 -0.5 291,877 - HMPREF1058_RS07190 0.33 -3.8 291,879 - HMPREF1058_RS07190 0.33 -4.5 291,879 - HMPREF1058_RS07190 0.33 -2.4 291,879 - HMPREF1058_RS07190 0.33 -6.0 291,880 + HMPREF1058_RS07190 0.34 -2.6 291,881 - HMPREF1058_RS07190 0.34 -4.1 292,041 + HMPREF1058_RS07190 0.54 -5.5 292,042 - HMPREF1058_RS07190 0.54 -4.2 292,185 - HMPREF1058_RS07190 0.72 -4.5 292,393 - -5.8 292,393 - -5.3 292,557 - -1.3 292,557 - HMPREF1058_RS07185 0.12 -3.8 292,698 - HMPREF1058_RS07185 0.26 -4.6 292,834 - HMPREF1058_RS07185 0.39 -7.2 292,920 - HMPREF1058_RS07185 0.48 -4.5 292,924 + HMPREF1058_RS07185 0.48 -2.1 292,928 + HMPREF1058_RS07185 0.49 -3.5 292,929 - HMPREF1058_RS07185 0.49 -5.1 292,929 - HMPREF1058_RS07185 0.49 -2.9 292,929 - HMPREF1058_RS07185 0.49 -6.3 292,995 + HMPREF1058_RS07185 0.56 -3.6 292,995 - HMPREF1058_RS07185 0.56 -1.8 292,996 - HMPREF1058_RS07185 0.56 -5.6 292,996 - HMPREF1058_RS07185 0.56 -4.9 293,106 + HMPREF1058_RS07185 0.67 -2.9 293,164 + HMPREF1058_RS07185 0.72 -2.6 293,180 - HMPREF1058_RS07185 0.74 -2.2 293,237 + HMPREF1058_RS07185 0.80 -3.6 293,346 + -4.6 293,445 - -2.7 293,445 - +1.7 293,448 + -5.0 293,448 + -5.1 293,551 + HMPREF1058_RS07180 0.16 -4.0 293,686 - HMPREF1058_RS07180 0.38 -2.3 293,744 + HMPREF1058_RS07180 0.48 -2.8 293,745 - HMPREF1058_RS07180 0.48 -2.4 293,756 + HMPREF1058_RS07180 0.50 -3.2 293,756 + HMPREF1058_RS07180 0.50 +1.5 293,820 - HMPREF1058_RS07180 0.61 -2.1 293,820 - HMPREF1058_RS07180 0.61 -0.3 293,820 - HMPREF1058_RS07180 0.61 -1.5 293,855 - HMPREF1058_RS07180 0.67 -3.4 293,960 + HMPREF1058_RS07180 0.85 -1.9 293,963 + HMPREF1058_RS07180 0.85 -2.4 294,014 - -3.5 294,025 - -2.1 294,025 - -4.5 294,025 - -4.5 294,025 - -3.6 294,039 - -3.6 294,125 + -2.7 294,148 + -2.2 294,149 - -3.1 294,153 - -3.1 294,205 + HMPREF1058_RS07175 0.10 -4.8 294,205 + HMPREF1058_RS07175 0.10 -2.8 294,206 - HMPREF1058_RS07175 0.10 -4.4 294,317 + HMPREF1058_RS07175 0.18 -4.4 294,318 - HMPREF1058_RS07175 0.18 -2.2 294,361 + HMPREF1058_RS07175 0.21 -2.6 294,362 - HMPREF1058_RS07175 0.21 +0.5
Or see this region's nucleotide sequence