Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07070 and HMPREF1058_RS07065 are separated by 332 nucleotides HMPREF1058_RS07065 and HMPREF1058_RS07060 are separated by 43 nucleotides HMPREF1058_RS07060 and HMPREF1058_RS07055 are separated by 10 nucleotides
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384
_RS07065
HMPREF1058_RS07060: HMPREF1058_RS07060 - DUF3869 domain-containing protein, at 325,428 to 326,276
_RS07060
HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525
_RS07055
Position (kb) 324
325
326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070 at 323.922 kb on - strand at 323.965 kb on + strand at 323.965 kb on + strand at 323.966 kb on - strand at 324.002 kb on + strand at 324.004 kb on + strand at 324.004 kb on + strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.006 kb on + strand at 324.007 kb on - strand at 324.007 kb on - strand at 324.027 kb on + strand at 324.027 kb on + strand at 324.041 kb on - strand at 324.042 kb on + strand at 324.042 kb on + strand at 324.043 kb on - strand at 324.045 kb on - strand at 324.045 kb on - strand at 324.056 kb on - strand at 324.140 kb on + strand at 324.140 kb on + strand at 324.141 kb on - strand at 324.193 kb on - strand at 324.242 kb on - strand at 324.308 kb on - strand at 324.325 kb on - strand at 324.412 kb on - strand, within HMPREF1058_RS07065 at 324.495 kb on + strand, within HMPREF1058_RS07065 at 324.540 kb on - strand, within HMPREF1058_RS07065 at 324.544 kb on + strand, within HMPREF1058_RS07065 at 324.550 kb on + strand, within HMPREF1058_RS07065 at 324.551 kb on - strand, within HMPREF1058_RS07065 at 324.592 kb on + strand, within HMPREF1058_RS07065 at 324.639 kb on - strand, within HMPREF1058_RS07065 at 324.687 kb on - strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.737 kb on + strand, within HMPREF1058_RS07065 at 324.738 kb on - strand, within HMPREF1058_RS07065 at 324.761 kb on - strand, within HMPREF1058_RS07065 at 324.844 kb on + strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.890 kb on - strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.954 kb on + strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.958 kb on + strand, within HMPREF1058_RS07065 at 325.001 kb on + strand, within HMPREF1058_RS07065 at 325.064 kb on + strand, within HMPREF1058_RS07065 at 325.064 kb on + strand, within HMPREF1058_RS07065 at 325.092 kb on + strand, within HMPREF1058_RS07065 at 325.093 kb on - strand, within HMPREF1058_RS07065 at 325.128 kb on - strand, within HMPREF1058_RS07065 at 325.133 kb on + strand, within HMPREF1058_RS07065 at 325.145 kb on + strand, within HMPREF1058_RS07065 at 325.186 kb on + strand, within HMPREF1058_RS07065 at 325.253 kb on + strand, within HMPREF1058_RS07065 at 325.253 kb on + strand, within HMPREF1058_RS07065 at 325.266 kb on - strand, within HMPREF1058_RS07065 at 325.301 kb on - strand at 325.301 kb on - strand at 325.341 kb on - strand at 325.405 kb on + strand at 325.442 kb on + strand at 325.443 kb on - strand at 325.542 kb on - strand, within HMPREF1058_RS07060 at 325.547 kb on + strand, within HMPREF1058_RS07060 at 325.639 kb on + strand, within HMPREF1058_RS07060 at 325.656 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.689 kb on + strand, within HMPREF1058_RS07060 at 325.734 kb on - strand, within HMPREF1058_RS07060 at 325.777 kb on - strand, within HMPREF1058_RS07060 at 325.804 kb on + strand, within HMPREF1058_RS07060 at 325.819 kb on + strand, within HMPREF1058_RS07060 at 325.820 kb on - strand, within HMPREF1058_RS07060 at 325.863 kb on - strand, within HMPREF1058_RS07060 at 325.873 kb on - strand, within HMPREF1058_RS07060 at 325.926 kb on - strand, within HMPREF1058_RS07060 at 325.928 kb on + strand, within HMPREF1058_RS07060 at 325.974 kb on - strand, within HMPREF1058_RS07060 at 326.003 kb on - strand, within HMPREF1058_RS07060 at 326.014 kb on - strand, within HMPREF1058_RS07060 at 326.016 kb on - strand, within HMPREF1058_RS07060 at 326.034 kb on + strand, within HMPREF1058_RS07060 at 326.035 kb on - strand, within HMPREF1058_RS07060 at 326.098 kb on - strand, within HMPREF1058_RS07060 at 326.221 kb on - strand at 326.223 kb on + strand at 326.240 kb on + strand at 326.334 kb on + strand at 326.335 kb on - strand at 326.368 kb on - strand at 326.369 kb on + strand at 326.370 kb on - strand at 326.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 323,338 + HMPREF1058_RS07070 0.35 +1.6 323,353 + HMPREF1058_RS07070 0.37 +0.0 323,369 + HMPREF1058_RS07070 0.39 -0.8 323,369 + HMPREF1058_RS07070 0.39 -1.3 323,372 + HMPREF1058_RS07070 0.39 -2.2 323,397 + HMPREF1058_RS07070 0.42 -1.6 323,408 + HMPREF1058_RS07070 0.43 +0.2 323,408 + HMPREF1058_RS07070 0.43 +0.5 323,502 + HMPREF1058_RS07070 0.53 -0.6 323,510 - HMPREF1058_RS07070 0.53 -0.1 323,534 + HMPREF1058_RS07070 0.56 -1.3 323,616 - HMPREF1058_RS07070 0.64 -1.2 323,709 - HMPREF1058_RS07070 0.74 -0.1 323,709 - HMPREF1058_RS07070 0.74 +1.0 323,712 + HMPREF1058_RS07070 0.74 -0.2 323,713 - HMPREF1058_RS07070 0.74 -0.7 323,725 - HMPREF1058_RS07070 0.76 +2.0 323,725 - HMPREF1058_RS07070 0.76 +2.7 323,732 + HMPREF1058_RS07070 0.76 +0.1 323,733 - HMPREF1058_RS07070 0.77 -0.8 323,733 - HMPREF1058_RS07070 0.77 +0.9 323,798 + HMPREF1058_RS07070 0.83 -0.1 323,798 + HMPREF1058_RS07070 0.83 -0.5 323,799 - HMPREF1058_RS07070 0.83 -0.2 323,858 + HMPREF1058_RS07070 0.90 -0.4 323,922 - -0.7 323,965 + -0.3 323,965 + -0.4 323,966 - -0.7 324,002 + -2.0 324,004 + -1.4 324,004 + -0.4 324,005 - +0.0 324,005 - +1.4 324,005 - -0.6 324,006 + -0.9 324,007 - +0.5 324,007 - -1.1 324,027 + -0.9 324,027 + -0.8 324,041 - -0.4 324,042 + -1.7 324,042 + +0.9 324,043 - -0.1 324,045 - -1.0 324,045 - +0.1 324,056 - -1.6 324,140 + -1.9 324,140 + +1.5 324,141 - -0.4 324,193 - +1.0 324,242 - -2.2 324,308 - -2.5 324,325 - -0.4 324,412 - HMPREF1058_RS07065 0.11 -0.4 324,495 + HMPREF1058_RS07065 0.19 +0.0 324,540 - HMPREF1058_RS07065 0.23 -0.4 324,544 + HMPREF1058_RS07065 0.23 -2.0 324,550 + HMPREF1058_RS07065 0.24 -2.9 324,551 - HMPREF1058_RS07065 0.24 -2.0 324,592 + HMPREF1058_RS07065 0.28 -0.8 324,639 - HMPREF1058_RS07065 0.32 -1.0 324,687 - HMPREF1058_RS07065 0.36 -1.3 324,732 + HMPREF1058_RS07065 0.40 -1.2 324,732 + HMPREF1058_RS07065 0.40 -1.7 324,737 + HMPREF1058_RS07065 0.41 -0.7 324,738 - HMPREF1058_RS07065 0.41 -0.7 324,761 - HMPREF1058_RS07065 0.43 -2.1 324,844 + HMPREF1058_RS07065 0.51 -0.4 324,845 - HMPREF1058_RS07065 0.51 -1.7 324,845 - HMPREF1058_RS07065 0.51 +0.6 324,890 - HMPREF1058_RS07065 0.55 -0.4 324,919 + HMPREF1058_RS07065 0.57 -0.7 324,919 + HMPREF1058_RS07065 0.57 -1.7 324,954 + HMPREF1058_RS07065 0.61 -3.0 324,955 - HMPREF1058_RS07065 0.61 +0.0 324,955 - HMPREF1058_RS07065 0.61 -1.4 324,958 + HMPREF1058_RS07065 0.61 -0.4 325,001 + HMPREF1058_RS07065 0.65 -0.7 325,064 + HMPREF1058_RS07065 0.71 +1.6 325,064 + HMPREF1058_RS07065 0.71 +0.0 325,092 + HMPREF1058_RS07065 0.73 -0.7 325,093 - HMPREF1058_RS07065 0.73 -2.5 325,128 - HMPREF1058_RS07065 0.77 -1.7 325,133 + HMPREF1058_RS07065 0.77 -1.2 325,145 + HMPREF1058_RS07065 0.78 +1.6 325,186 + HMPREF1058_RS07065 0.82 -0.4 325,253 + HMPREF1058_RS07065 0.88 -0.4 325,253 + HMPREF1058_RS07065 0.88 -0.7 325,266 - HMPREF1058_RS07065 0.89 -2.7 325,301 - -1.2 325,301 - -1.3 325,341 - +0.6 325,405 + -1.0 325,442 + -1.0 325,443 - -1.8 325,542 - HMPREF1058_RS07060 0.13 -1.6 325,547 + HMPREF1058_RS07060 0.14 +0.0 325,639 + HMPREF1058_RS07060 0.25 -1.7 325,656 - HMPREF1058_RS07060 0.27 -1.4 325,681 - HMPREF1058_RS07060 0.30 -0.7 325,681 - HMPREF1058_RS07060 0.30 -2.1 325,689 + HMPREF1058_RS07060 0.31 -2.6 325,734 - HMPREF1058_RS07060 0.36 -1.6 325,777 - HMPREF1058_RS07060 0.41 -2.0 325,804 + HMPREF1058_RS07060 0.44 -0.8 325,819 + HMPREF1058_RS07060 0.46 -0.7 325,820 - HMPREF1058_RS07060 0.46 +0.6 325,863 - HMPREF1058_RS07060 0.51 +0.2 325,873 - HMPREF1058_RS07060 0.52 -0.4 325,926 - HMPREF1058_RS07060 0.59 -2.2 325,928 + HMPREF1058_RS07060 0.59 +0.9 325,974 - HMPREF1058_RS07060 0.64 -3.8 326,003 - HMPREF1058_RS07060 0.68 -0.6 326,014 - HMPREF1058_RS07060 0.69 -1.2 326,016 - HMPREF1058_RS07060 0.69 -2.7 326,034 + HMPREF1058_RS07060 0.71 +1.0 326,035 - HMPREF1058_RS07060 0.71 -0.4 326,098 - HMPREF1058_RS07060 0.79 -2.2 326,221 - -2.6 326,223 + -1.2 326,240 + +1.9 326,334 + +0.6 326,335 - +1.5 326,368 - -0.6 326,369 + +0.0 326,370 - -0.8 326,382 - -0.3
Or see this region's nucleotide sequence