Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06825 and HMPREF1058_RS06820 are separated by 126 nucleotides HMPREF1058_RS06820 and HMPREF1058_RS06815 are separated by 120 nucleotides
HMPREF1058_RS06825: HMPREF1058_RS06825 - ACP S-malonyltransferase, at 388,774 to 389,661
_RS06825
HMPREF1058_RS06820: HMPREF1058_RS06820 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 389,788 to 390,612
_RS06820
HMPREF1058_RS06815: HMPREF1058_RS06815 - SDR family oxidoreductase, at 390,733 to 391,671
_RS06815
Position (kb) 389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 389.746 kb on - strand at 389.746 kb on - strand at 389.755 kb on + strand at 389.760 kb on - strand at 389.851 kb on + strand at 389.928 kb on - strand, within HMPREF1058_RS06820 at 389.968 kb on - strand, within HMPREF1058_RS06820 at 389.999 kb on - strand, within HMPREF1058_RS06820 at 389.999 kb on - strand, within HMPREF1058_RS06820 at 390.004 kb on - strand, within HMPREF1058_RS06820 at 390.050 kb on - strand, within HMPREF1058_RS06820 at 390.157 kb on + strand, within HMPREF1058_RS06820 at 390.260 kb on - strand, within HMPREF1058_RS06820 at 390.325 kb on - strand, within HMPREF1058_RS06820 at 390.373 kb on - strand, within HMPREF1058_RS06820 at 390.376 kb on + strand, within HMPREF1058_RS06820 at 390.399 kb on + strand, within HMPREF1058_RS06820 at 390.419 kb on - strand, within HMPREF1058_RS06820 at 390.431 kb on - strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.434 kb on + strand, within HMPREF1058_RS06820 at 390.435 kb on - strand, within HMPREF1058_RS06820 at 390.435 kb on - strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.454 kb on + strand, within HMPREF1058_RS06820 at 390.455 kb on - strand, within HMPREF1058_RS06820 at 390.455 kb on - strand, within HMPREF1058_RS06820 at 390.603 kb on - strand at 390.603 kb on - strand at 390.612 kb on + strand at 390.615 kb on - strand at 390.783 kb on - strand at 390.807 kb on + strand at 390.818 kb on + strand at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.857 kb on + strand, within HMPREF1058_RS06815 at 390.858 kb on - strand, within HMPREF1058_RS06815 at 390.858 kb on - strand, within HMPREF1058_RS06815 at 390.905 kb on + strand, within HMPREF1058_RS06815 at 390.905 kb on + strand, within HMPREF1058_RS06815 at 390.906 kb on - strand, within HMPREF1058_RS06815 at 390.969 kb on - strand, within HMPREF1058_RS06815 at 391.024 kb on - strand, within HMPREF1058_RS06815 at 391.162 kb on + strand, within HMPREF1058_RS06815 at 391.236 kb on - strand, within HMPREF1058_RS06815 at 391.252 kb on - strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.255 kb on + strand, within HMPREF1058_RS06815 at 391.256 kb on - strand, within HMPREF1058_RS06815 at 391.264 kb on - strand, within HMPREF1058_RS06815 at 391.319 kb on + strand, within HMPREF1058_RS06815 at 391.319 kb on + strand, within HMPREF1058_RS06815 at 391.320 kb on - strand, within HMPREF1058_RS06815 at 391.323 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.329 kb on + strand, within HMPREF1058_RS06815 at 391.330 kb on - strand, within HMPREF1058_RS06815 at 391.331 kb on + strand, within HMPREF1058_RS06815 at 391.340 kb on - strand, within HMPREF1058_RS06815 at 391.363 kb on - strand, within HMPREF1058_RS06815 at 391.376 kb on + strand, within HMPREF1058_RS06815 at 391.400 kb on + strand, within HMPREF1058_RS06815 at 391.400 kb on + strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.401 kb on - strand, within HMPREF1058_RS06815 at 391.404 kb on + strand, within HMPREF1058_RS06815 at 391.404 kb on + strand, within HMPREF1058_RS06815 at 391.405 kb on - strand, within HMPREF1058_RS06815 at 391.405 kb on - strand, within HMPREF1058_RS06815 at 391.516 kb on - strand, within HMPREF1058_RS06815 at 391.535 kb on + strand, within HMPREF1058_RS06815 at 391.572 kb on + strand, within HMPREF1058_RS06815
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 389,746 - +0.9 389,746 - +0.2 389,755 + +0.8 389,760 - +0.0 389,851 + -1.2 389,928 - HMPREF1058_RS06820 0.17 -1.1 389,968 - HMPREF1058_RS06820 0.22 -3.0 389,999 - HMPREF1058_RS06820 0.26 -0.0 389,999 - HMPREF1058_RS06820 0.26 -2.9 390,004 - HMPREF1058_RS06820 0.26 +0.1 390,050 - HMPREF1058_RS06820 0.32 -2.8 390,157 + HMPREF1058_RS06820 0.45 -3.1 390,260 - HMPREF1058_RS06820 0.57 -1.0 390,325 - HMPREF1058_RS06820 0.65 -2.6 390,373 - HMPREF1058_RS06820 0.71 -3.9 390,376 + HMPREF1058_RS06820 0.71 -1.6 390,399 + HMPREF1058_RS06820 0.74 -2.2 390,419 - HMPREF1058_RS06820 0.76 -3.8 390,431 - HMPREF1058_RS06820 0.78 -1.3 390,434 + HMPREF1058_RS06820 0.78 -1.9 390,434 + HMPREF1058_RS06820 0.78 -1.9 390,434 + HMPREF1058_RS06820 0.78 -0.7 390,435 - HMPREF1058_RS06820 0.78 -2.1 390,435 - HMPREF1058_RS06820 0.78 -1.1 390,454 + HMPREF1058_RS06820 0.81 -0.6 390,454 + HMPREF1058_RS06820 0.81 -1.8 390,454 + HMPREF1058_RS06820 0.81 -2.0 390,455 - HMPREF1058_RS06820 0.81 -2.4 390,455 - HMPREF1058_RS06820 0.81 -2.9 390,603 - -0.5 390,603 - -1.4 390,612 + -0.9 390,615 - -0.5 390,783 - -0.1 390,807 + -0.9 390,818 + -0.7 390,857 + HMPREF1058_RS06815 0.13 +0.7 390,857 + HMPREF1058_RS06815 0.13 -1.9 390,857 + HMPREF1058_RS06815 0.13 -3.4 390,857 + HMPREF1058_RS06815 0.13 -0.9 390,857 + HMPREF1058_RS06815 0.13 -1.9 390,858 - HMPREF1058_RS06815 0.13 +0.1 390,858 - HMPREF1058_RS06815 0.13 +1.4 390,905 + HMPREF1058_RS06815 0.18 -2.9 390,905 + HMPREF1058_RS06815 0.18 -0.2 390,906 - HMPREF1058_RS06815 0.18 -1.9 390,969 - HMPREF1058_RS06815 0.25 +0.3 391,024 - HMPREF1058_RS06815 0.31 +0.3 391,162 + HMPREF1058_RS06815 0.46 -0.4 391,236 - HMPREF1058_RS06815 0.54 -0.5 391,252 - HMPREF1058_RS06815 0.55 -2.0 391,255 + HMPREF1058_RS06815 0.56 -0.5 391,255 + HMPREF1058_RS06815 0.56 -2.0 391,255 + HMPREF1058_RS06815 0.56 +0.8 391,256 - HMPREF1058_RS06815 0.56 -0.2 391,264 - HMPREF1058_RS06815 0.57 -0.5 391,319 + HMPREF1058_RS06815 0.62 -1.1 391,319 + HMPREF1058_RS06815 0.62 -1.1 391,320 - HMPREF1058_RS06815 0.63 -0.1 391,323 + HMPREF1058_RS06815 0.63 -2.1 391,329 + HMPREF1058_RS06815 0.63 -0.9 391,329 + HMPREF1058_RS06815 0.63 -0.2 391,329 + HMPREF1058_RS06815 0.63 +0.2 391,330 - HMPREF1058_RS06815 0.64 -1.0 391,331 + HMPREF1058_RS06815 0.64 -1.4 391,340 - HMPREF1058_RS06815 0.65 +0.1 391,363 - HMPREF1058_RS06815 0.67 +1.0 391,376 + HMPREF1058_RS06815 0.68 -0.6 391,400 + HMPREF1058_RS06815 0.71 -0.6 391,400 + HMPREF1058_RS06815 0.71 -1.5 391,401 - HMPREF1058_RS06815 0.71 +0.1 391,401 - HMPREF1058_RS06815 0.71 +0.1 391,401 - HMPREF1058_RS06815 0.71 -2.1 391,404 + HMPREF1058_RS06815 0.71 -0.7 391,404 + HMPREF1058_RS06815 0.71 -2.4 391,405 - HMPREF1058_RS06815 0.72 +1.6 391,405 - HMPREF1058_RS06815 0.72 +2.2 391,516 - HMPREF1058_RS06815 0.83 +1.6 391,535 + HMPREF1058_RS06815 0.85 -1.4 391,572 + HMPREF1058_RS06815 0.89 +0.3
Or see this region's nucleotide sequence