Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06820

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06825 and HMPREF1058_RS06820 are separated by 126 nucleotidesHMPREF1058_RS06820 and HMPREF1058_RS06815 are separated by 120 nucleotides HMPREF1058_RS06825: HMPREF1058_RS06825 - ACP S-malonyltransferase, at 388,774 to 389,661 _RS06825 HMPREF1058_RS06820: HMPREF1058_RS06820 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 389,788 to 390,612 _RS06820 HMPREF1058_RS06815: HMPREF1058_RS06815 - SDR family oxidoreductase, at 390,733 to 391,671 _RS06815 Position (kb) 389 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 389.746 kb on - strandat 389.746 kb on - strandat 389.755 kb on + strandat 389.760 kb on - strandat 389.851 kb on + strandat 389.928 kb on - strand, within HMPREF1058_RS06820at 389.968 kb on - strand, within HMPREF1058_RS06820at 389.999 kb on - strand, within HMPREF1058_RS06820at 389.999 kb on - strand, within HMPREF1058_RS06820at 390.004 kb on - strand, within HMPREF1058_RS06820at 390.050 kb on - strand, within HMPREF1058_RS06820at 390.157 kb on + strand, within HMPREF1058_RS06820at 390.260 kb on - strand, within HMPREF1058_RS06820at 390.325 kb on - strand, within HMPREF1058_RS06820at 390.373 kb on - strand, within HMPREF1058_RS06820at 390.376 kb on + strand, within HMPREF1058_RS06820at 390.399 kb on + strand, within HMPREF1058_RS06820at 390.419 kb on - strand, within HMPREF1058_RS06820at 390.431 kb on - strand, within HMPREF1058_RS06820at 390.434 kb on + strand, within HMPREF1058_RS06820at 390.434 kb on + strand, within HMPREF1058_RS06820at 390.434 kb on + strand, within HMPREF1058_RS06820at 390.435 kb on - strand, within HMPREF1058_RS06820at 390.435 kb on - strand, within HMPREF1058_RS06820at 390.454 kb on + strand, within HMPREF1058_RS06820at 390.454 kb on + strand, within HMPREF1058_RS06820at 390.454 kb on + strand, within HMPREF1058_RS06820at 390.455 kb on - strand, within HMPREF1058_RS06820at 390.455 kb on - strand, within HMPREF1058_RS06820at 390.603 kb on - strandat 390.603 kb on - strandat 390.612 kb on + strandat 390.615 kb on - strandat 390.783 kb on - strandat 390.807 kb on + strandat 390.818 kb on + strandat 390.857 kb on + strand, within HMPREF1058_RS06815at 390.857 kb on + strand, within HMPREF1058_RS06815at 390.857 kb on + strand, within HMPREF1058_RS06815at 390.857 kb on + strand, within HMPREF1058_RS06815at 390.857 kb on + strand, within HMPREF1058_RS06815at 390.858 kb on - strand, within HMPREF1058_RS06815at 390.858 kb on - strand, within HMPREF1058_RS06815at 390.905 kb on + strand, within HMPREF1058_RS06815at 390.905 kb on + strand, within HMPREF1058_RS06815at 390.906 kb on - strand, within HMPREF1058_RS06815at 390.969 kb on - strand, within HMPREF1058_RS06815at 391.024 kb on - strand, within HMPREF1058_RS06815at 391.162 kb on + strand, within HMPREF1058_RS06815at 391.236 kb on - strand, within HMPREF1058_RS06815at 391.252 kb on - strand, within HMPREF1058_RS06815at 391.255 kb on + strand, within HMPREF1058_RS06815at 391.255 kb on + strand, within HMPREF1058_RS06815at 391.255 kb on + strand, within HMPREF1058_RS06815at 391.256 kb on - strand, within HMPREF1058_RS06815at 391.264 kb on - strand, within HMPREF1058_RS06815at 391.319 kb on + strand, within HMPREF1058_RS06815at 391.319 kb on + strand, within HMPREF1058_RS06815at 391.320 kb on - strand, within HMPREF1058_RS06815at 391.323 kb on + strand, within HMPREF1058_RS06815at 391.329 kb on + strand, within HMPREF1058_RS06815at 391.329 kb on + strand, within HMPREF1058_RS06815at 391.329 kb on + strand, within HMPREF1058_RS06815at 391.330 kb on - strand, within HMPREF1058_RS06815at 391.331 kb on + strand, within HMPREF1058_RS06815at 391.340 kb on - strand, within HMPREF1058_RS06815at 391.363 kb on - strand, within HMPREF1058_RS06815at 391.376 kb on + strand, within HMPREF1058_RS06815at 391.400 kb on + strand, within HMPREF1058_RS06815at 391.400 kb on + strand, within HMPREF1058_RS06815at 391.401 kb on - strand, within HMPREF1058_RS06815at 391.401 kb on - strand, within HMPREF1058_RS06815at 391.401 kb on - strand, within HMPREF1058_RS06815at 391.404 kb on + strand, within HMPREF1058_RS06815at 391.404 kb on + strand, within HMPREF1058_RS06815at 391.405 kb on - strand, within HMPREF1058_RS06815at 391.405 kb on - strand, within HMPREF1058_RS06815at 391.516 kb on - strand, within HMPREF1058_RS06815at 391.535 kb on + strand, within HMPREF1058_RS06815at 391.572 kb on + strand, within HMPREF1058_RS06815

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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389,746 - +0.9
389,746 - +0.2
389,755 + +0.8
389,760 - +0.0
389,851 + -1.2
389,928 - HMPREF1058_RS06820 0.17 -1.1
389,968 - HMPREF1058_RS06820 0.22 -3.0
389,999 - HMPREF1058_RS06820 0.26 -0.0
389,999 - HMPREF1058_RS06820 0.26 -2.9
390,004 - HMPREF1058_RS06820 0.26 +0.1
390,050 - HMPREF1058_RS06820 0.32 -2.8
390,157 + HMPREF1058_RS06820 0.45 -3.1
390,260 - HMPREF1058_RS06820 0.57 -1.0
390,325 - HMPREF1058_RS06820 0.65 -2.6
390,373 - HMPREF1058_RS06820 0.71 -3.9
390,376 + HMPREF1058_RS06820 0.71 -1.6
390,399 + HMPREF1058_RS06820 0.74 -2.2
390,419 - HMPREF1058_RS06820 0.76 -3.8
390,431 - HMPREF1058_RS06820 0.78 -1.3
390,434 + HMPREF1058_RS06820 0.78 -1.9
390,434 + HMPREF1058_RS06820 0.78 -1.9
390,434 + HMPREF1058_RS06820 0.78 -0.7
390,435 - HMPREF1058_RS06820 0.78 -2.1
390,435 - HMPREF1058_RS06820 0.78 -1.1
390,454 + HMPREF1058_RS06820 0.81 -0.6
390,454 + HMPREF1058_RS06820 0.81 -1.8
390,454 + HMPREF1058_RS06820 0.81 -2.0
390,455 - HMPREF1058_RS06820 0.81 -2.4
390,455 - HMPREF1058_RS06820 0.81 -2.9
390,603 - -0.5
390,603 - -1.4
390,612 + -0.9
390,615 - -0.5
390,783 - -0.1
390,807 + -0.9
390,818 + -0.7
390,857 + HMPREF1058_RS06815 0.13 +0.7
390,857 + HMPREF1058_RS06815 0.13 -1.9
390,857 + HMPREF1058_RS06815 0.13 -3.4
390,857 + HMPREF1058_RS06815 0.13 -0.9
390,857 + HMPREF1058_RS06815 0.13 -1.9
390,858 - HMPREF1058_RS06815 0.13 +0.1
390,858 - HMPREF1058_RS06815 0.13 +1.4
390,905 + HMPREF1058_RS06815 0.18 -2.9
390,905 + HMPREF1058_RS06815 0.18 -0.2
390,906 - HMPREF1058_RS06815 0.18 -1.9
390,969 - HMPREF1058_RS06815 0.25 +0.3
391,024 - HMPREF1058_RS06815 0.31 +0.3
391,162 + HMPREF1058_RS06815 0.46 -0.4
391,236 - HMPREF1058_RS06815 0.54 -0.5
391,252 - HMPREF1058_RS06815 0.55 -2.0
391,255 + HMPREF1058_RS06815 0.56 -0.5
391,255 + HMPREF1058_RS06815 0.56 -2.0
391,255 + HMPREF1058_RS06815 0.56 +0.8
391,256 - HMPREF1058_RS06815 0.56 -0.2
391,264 - HMPREF1058_RS06815 0.57 -0.5
391,319 + HMPREF1058_RS06815 0.62 -1.1
391,319 + HMPREF1058_RS06815 0.62 -1.1
391,320 - HMPREF1058_RS06815 0.63 -0.1
391,323 + HMPREF1058_RS06815 0.63 -2.1
391,329 + HMPREF1058_RS06815 0.63 -0.9
391,329 + HMPREF1058_RS06815 0.63 -0.2
391,329 + HMPREF1058_RS06815 0.63 +0.2
391,330 - HMPREF1058_RS06815 0.64 -1.0
391,331 + HMPREF1058_RS06815 0.64 -1.4
391,340 - HMPREF1058_RS06815 0.65 +0.1
391,363 - HMPREF1058_RS06815 0.67 +1.0
391,376 + HMPREF1058_RS06815 0.68 -0.6
391,400 + HMPREF1058_RS06815 0.71 -0.6
391,400 + HMPREF1058_RS06815 0.71 -1.5
391,401 - HMPREF1058_RS06815 0.71 +0.1
391,401 - HMPREF1058_RS06815 0.71 +0.1
391,401 - HMPREF1058_RS06815 0.71 -2.1
391,404 + HMPREF1058_RS06815 0.71 -0.7
391,404 + HMPREF1058_RS06815 0.71 -2.4
391,405 - HMPREF1058_RS06815 0.72 +1.6
391,405 - HMPREF1058_RS06815 0.72 +2.2
391,516 - HMPREF1058_RS06815 0.83 +1.6
391,535 + HMPREF1058_RS06815 0.85 -1.4
391,572 + HMPREF1058_RS06815 0.89 +0.3

Or see this region's nucleotide sequence