Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06195 and HMPREF1058_RS06190 are separated by 107 nucleotides HMPREF1058_RS06190 and HMPREF1058_RS06185 are separated by 107 nucleotides HMPREF1058_RS06185 and HMPREF1058_RS06180 are separated by 1 nucleotides
HMPREF1058_RS06195: HMPREF1058_RS06195 - diaminopimelate decarboxylase, at 537,596 to 538,756
_RS06195
HMPREF1058_RS06190: HMPREF1058_RS06190 - aspartate kinase, at 538,864 to 540,183
_RS06190
HMPREF1058_RS06185: HMPREF1058_RS06185 - ATP-binding cassette domain-containing protein, at 540,291 to 541,049
_RS06185
HMPREF1058_RS06180: HMPREF1058_RS06180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 541,051 to 541,662
_RS06180
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 537.870 kb on - strand, within HMPREF1058_RS06195 at 537.873 kb on - strand, within HMPREF1058_RS06195 at 537.907 kb on - strand, within HMPREF1058_RS06195 at 537.945 kb on - strand, within HMPREF1058_RS06195 at 537.968 kb on + strand, within HMPREF1058_RS06195 at 538.006 kb on - strand, within HMPREF1058_RS06195 at 538.083 kb on - strand, within HMPREF1058_RS06195 at 538.090 kb on + strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.116 kb on + strand, within HMPREF1058_RS06195 at 538.117 kb on - strand, within HMPREF1058_RS06195 at 538.157 kb on + strand, within HMPREF1058_RS06195 at 538.171 kb on + strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.306 kb on + strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.419 kb on - strand, within HMPREF1058_RS06195 at 538.475 kb on - strand, within HMPREF1058_RS06195 at 538.478 kb on + strand, within HMPREF1058_RS06195 at 538.479 kb on - strand at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.699 kb on - strand at 538.702 kb on - strand at 538.761 kb on + strand at 538.879 kb on + strand at 538.941 kb on + strand at 538.946 kb on + strand at 538.971 kb on + strand at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.212 kb on + strand, within HMPREF1058_RS06190 at 539.358 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.409 kb on + strand, within HMPREF1058_RS06190 at 539.410 kb on - strand, within HMPREF1058_RS06190 at 539.526 kb on + strand, within HMPREF1058_RS06190 at 539.527 kb on - strand, within HMPREF1058_RS06190 at 539.615 kb on - strand, within HMPREF1058_RS06190 at 539.710 kb on - strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.712 kb on - strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 540.027 kb on + strand, within HMPREF1058_RS06190 at 540.029 kb on + strand, within HMPREF1058_RS06190 at 540.085 kb on + strand at 540.116 kb on - strand at 540.124 kb on + strand at 540.160 kb on - strand at 540.173 kb on - strand at 540.219 kb on - strand at 540.219 kb on - strand at 540.222 kb on + strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.370 kb on + strand, within HMPREF1058_RS06185 at 540.371 kb on - strand, within HMPREF1058_RS06185 at 540.818 kb on + strand, within HMPREF1058_RS06185 at 540.819 kb on - strand, within HMPREF1058_RS06185 at 540.876 kb on + strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.975 kb on + strand at 540.993 kb on + strand at 541.010 kb on + strand at 541.011 kb on - strand at 541.012 kb on + strand at 541.014 kb on + strand at 541.014 kb on + strand at 541.015 kb on - strand at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.149 kb on - strand, within HMPREF1058_RS06180 at 541.169 kb on + strand, within HMPREF1058_RS06180
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 537,870 - HMPREF1058_RS06195 0.24 -5.5 537,873 - HMPREF1058_RS06195 0.24 -4.9 537,907 - HMPREF1058_RS06195 0.27 -1.9 537,945 - HMPREF1058_RS06195 0.30 -2.3 537,968 + HMPREF1058_RS06195 0.32 -3.0 538,006 - HMPREF1058_RS06195 0.35 -3.3 538,083 - HMPREF1058_RS06195 0.42 -4.1 538,090 + HMPREF1058_RS06195 0.43 -4.6 538,091 - HMPREF1058_RS06195 0.43 -2.8 538,091 - HMPREF1058_RS06195 0.43 -3.9 538,091 - HMPREF1058_RS06195 0.43 -2.7 538,116 + HMPREF1058_RS06195 0.45 -0.3 538,117 - HMPREF1058_RS06195 0.45 -2.2 538,157 + HMPREF1058_RS06195 0.48 -2.8 538,171 + HMPREF1058_RS06195 0.50 -1.0 538,203 - HMPREF1058_RS06195 0.52 -5.2 538,203 - HMPREF1058_RS06195 0.52 -3.2 538,306 + HMPREF1058_RS06195 0.61 -2.8 538,383 - HMPREF1058_RS06195 0.68 -1.5 538,383 - HMPREF1058_RS06195 0.68 -4.3 538,419 - HMPREF1058_RS06195 0.71 -3.9 538,475 - HMPREF1058_RS06195 0.76 -2.9 538,478 + HMPREF1058_RS06195 0.76 -3.6 538,479 - -1.7 538,489 - HMPREF1058_RS06195 0.77 -2.0 538,489 - HMPREF1058_RS06195 0.77 -3.1 538,489 - HMPREF1058_RS06195 0.77 -3.0 538,548 - HMPREF1058_RS06195 0.82 -4.0 538,548 - HMPREF1058_RS06195 0.82 -2.2 538,699 - -3.6 538,702 - -4.0 538,761 + -2.3 538,879 + -4.8 538,941 + -2.0 538,946 + -3.7 538,971 + -4.8 539,058 + HMPREF1058_RS06190 0.15 -1.7 539,058 + HMPREF1058_RS06190 0.15 -0.9 539,090 + HMPREF1058_RS06190 0.17 -5.5 539,090 + HMPREF1058_RS06190 0.17 +0.7 539,212 + HMPREF1058_RS06190 0.26 -1.1 539,358 + HMPREF1058_RS06190 0.37 -2.1 539,387 + HMPREF1058_RS06190 0.40 -1.8 539,387 + HMPREF1058_RS06190 0.40 -0.7 539,409 + HMPREF1058_RS06190 0.41 -2.1 539,410 - HMPREF1058_RS06190 0.41 +0.7 539,526 + HMPREF1058_RS06190 0.50 -2.2 539,527 - HMPREF1058_RS06190 0.50 +0.7 539,615 - HMPREF1058_RS06190 0.57 -0.9 539,710 - HMPREF1058_RS06190 0.64 -2.3 539,711 + HMPREF1058_RS06190 0.64 -0.3 539,711 + HMPREF1058_RS06190 0.64 -1.8 539,712 - HMPREF1058_RS06190 0.64 -0.3 539,937 - HMPREF1058_RS06190 0.81 -1.5 539,937 - HMPREF1058_RS06190 0.81 -1.7 540,027 + HMPREF1058_RS06190 0.88 -0.7 540,029 + HMPREF1058_RS06190 0.88 -2.5 540,085 + -1.0 540,116 - -2.9 540,124 + -0.3 540,160 - -0.9 540,173 - -1.3 540,219 - -0.3 540,219 - -1.3 540,222 + -0.7 540,315 - -1.8 540,315 - -1.8 540,315 - -3.1 540,370 + HMPREF1058_RS06185 0.10 +0.7 540,371 - HMPREF1058_RS06185 0.11 +0.6 540,818 + HMPREF1058_RS06185 0.69 -1.2 540,819 - HMPREF1058_RS06185 0.70 -1.8 540,876 + HMPREF1058_RS06185 0.77 -0.4 540,877 - HMPREF1058_RS06185 0.77 -1.5 540,877 - HMPREF1058_RS06185 0.77 -0.4 540,877 - HMPREF1058_RS06185 0.77 -0.8 540,975 + -0.4 540,993 + -0.9 541,010 + -1.0 541,011 - -0.1 541,012 + -1.4 541,014 + -0.0 541,014 + -0.4 541,015 - +0.7 541,136 - HMPREF1058_RS06180 0.14 -1.8 541,136 - HMPREF1058_RS06180 0.14 -5.6 541,136 - HMPREF1058_RS06180 0.14 -4.2 541,136 - HMPREF1058_RS06180 0.14 -2.6 541,149 - HMPREF1058_RS06180 0.16 -0.9 541,169 + HMPREF1058_RS06180 0.19 -4.1
Or see this region's nucleotide sequence