Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05785 and HMPREF1058_RS05780 are separated by 143 nucleotides HMPREF1058_RS05780 and HMPREF1058_RS05775 are separated by 13 nucleotides HMPREF1058_RS05775 and HMPREF1058_RS05770 are separated by 145 nucleotides
HMPREF1058_RS05785: HMPREF1058_RS05785 - adenine nucleotide alpha hydrolase family protein, at 80,437 to 81,192
_RS05785
HMPREF1058_RS05780: HMPREF1058_RS05780 - PD40 domain-containing protein, at 81,336 to 82,745
_RS05780
HMPREF1058_RS05775: HMPREF1058_RS05775 - NfeD family protein, at 82,759 to 83,229
_RS05775
HMPREF1058_RS05770: HMPREF1058_RS05770 - flotillin-like protein FloA, at 83,375 to 84,373
_RS05770
Position (kb) 81
82
83 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 80.337 kb on - strand at 80.348 kb on - strand at 80.387 kb on - strand at 80.391 kb on - strand at 80.392 kb on + strand at 80.407 kb on + strand at 80.441 kb on - strand at 80.506 kb on - strand at 80.506 kb on - strand at 80.540 kb on + strand, within HMPREF1058_RS05785 at 80.542 kb on + strand, within HMPREF1058_RS05785 at 80.557 kb on - strand, within HMPREF1058_RS05785 at 80.671 kb on - strand, within HMPREF1058_RS05785 at 80.715 kb on + strand, within HMPREF1058_RS05785 at 80.739 kb on + strand, within HMPREF1058_RS05785 at 80.923 kb on + strand, within HMPREF1058_RS05785 at 80.948 kb on + strand, within HMPREF1058_RS05785 at 80.974 kb on - strand, within HMPREF1058_RS05785 at 80.986 kb on + strand, within HMPREF1058_RS05785 at 80.987 kb on - strand, within HMPREF1058_RS05785 at 81.086 kb on - strand, within HMPREF1058_RS05785 at 81.096 kb on + strand, within HMPREF1058_RS05785 at 81.193 kb on - strand at 81.223 kb on - strand at 81.270 kb on - strand at 81.310 kb on + strand at 81.350 kb on + strand at 81.371 kb on - strand at 81.498 kb on + strand, within HMPREF1058_RS05780 at 81.617 kb on - strand, within HMPREF1058_RS05780 at 81.622 kb on - strand, within HMPREF1058_RS05780 at 81.649 kb on + strand, within HMPREF1058_RS05780 at 81.649 kb on + strand, within HMPREF1058_RS05780 at 81.653 kb on + strand, within HMPREF1058_RS05780 at 81.653 kb on + strand, within HMPREF1058_RS05780 at 81.654 kb on - strand, within HMPREF1058_RS05780 at 81.670 kb on + strand, within HMPREF1058_RS05780 at 81.670 kb on + strand, within HMPREF1058_RS05780 at 81.671 kb on - strand, within HMPREF1058_RS05780 at 81.671 kb on - strand, within HMPREF1058_RS05780 at 81.752 kb on - strand, within HMPREF1058_RS05780 at 81.776 kb on - strand, within HMPREF1058_RS05780 at 81.822 kb on - strand, within HMPREF1058_RS05780 at 81.849 kb on + strand, within HMPREF1058_RS05780 at 81.880 kb on - strand, within HMPREF1058_RS05780 at 81.899 kb on + strand, within HMPREF1058_RS05780 at 81.945 kb on + strand, within HMPREF1058_RS05780 at 81.946 kb on - strand, within HMPREF1058_RS05780 at 81.946 kb on - strand, within HMPREF1058_RS05780 at 82.018 kb on + strand, within HMPREF1058_RS05780 at 82.050 kb on - strand, within HMPREF1058_RS05780 at 82.056 kb on + strand, within HMPREF1058_RS05780 at 82.057 kb on - strand, within HMPREF1058_RS05780 at 82.059 kb on + strand, within HMPREF1058_RS05780 at 82.059 kb on + strand, within HMPREF1058_RS05780 at 82.060 kb on - strand, within HMPREF1058_RS05780 at 82.113 kb on + strand, within HMPREF1058_RS05780 at 82.153 kb on + strand, within HMPREF1058_RS05780 at 82.154 kb on - strand, within HMPREF1058_RS05780 at 82.185 kb on + strand, within HMPREF1058_RS05780 at 82.186 kb on - strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.262 kb on + strand, within HMPREF1058_RS05780 at 82.267 kb on - strand, within HMPREF1058_RS05780 at 82.314 kb on - strand, within HMPREF1058_RS05780 at 82.365 kb on - strand, within HMPREF1058_RS05780 at 82.422 kb on + strand, within HMPREF1058_RS05780 at 82.468 kb on + strand, within HMPREF1058_RS05780 at 82.603 kb on - strand, within HMPREF1058_RS05780 at 82.603 kb on - strand, within HMPREF1058_RS05780 at 82.667 kb on + strand at 82.746 kb on + strand at 82.747 kb on - strand at 82.754 kb on + strand at 82.755 kb on - strand at 82.770 kb on + strand at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.875 kb on - strand, within HMPREF1058_RS05775 at 82.875 kb on - strand, within HMPREF1058_RS05775 at 82.885 kb on + strand, within HMPREF1058_RS05775 at 82.975 kb on - strand, within HMPREF1058_RS05775 at 83.018 kb on + strand, within HMPREF1058_RS05775 at 83.019 kb on - strand, within HMPREF1058_RS05775 at 83.024 kb on - strand, within HMPREF1058_RS05775 at 83.025 kb on + strand, within HMPREF1058_RS05775 at 83.166 kb on + strand, within HMPREF1058_RS05775 at 83.167 kb on - strand, within HMPREF1058_RS05775 at 83.167 kb on - strand, within HMPREF1058_RS05775 at 83.244 kb on - strand at 83.292 kb on + strand at 83.293 kb on - strand at 83.298 kb on - strand at 83.359 kb on + strand at 83.372 kb on - strand at 83.391 kb on - strand at 83.391 kb on - strand at 83.409 kb on + strand at 83.433 kb on + strand at 83.434 kb on - strand at 83.434 kb on - strand at 83.437 kb on - strand at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.624 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.737 kb on - strand, within HMPREF1058_RS05770
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 80,337 - -1.8 80,348 - -0.9 80,387 - -0.4 80,391 - -1.5 80,392 + +1.6 80,407 + +0.5 80,441 - -0.3 80,506 - -2.1 80,506 - +0.3 80,540 + HMPREF1058_RS05785 0.14 +1.0 80,542 + HMPREF1058_RS05785 0.14 +1.8 80,557 - HMPREF1058_RS05785 0.16 -0.5 80,671 - HMPREF1058_RS05785 0.31 -1.0 80,715 + HMPREF1058_RS05785 0.37 -1.0 80,739 + HMPREF1058_RS05785 0.40 +0.2 80,923 + HMPREF1058_RS05785 0.64 +1.8 80,948 + HMPREF1058_RS05785 0.68 +0.8 80,974 - HMPREF1058_RS05785 0.71 -0.1 80,986 + HMPREF1058_RS05785 0.73 +1.0 80,987 - HMPREF1058_RS05785 0.73 -0.6 81,086 - HMPREF1058_RS05785 0.86 +1.6 81,096 + HMPREF1058_RS05785 0.87 +1.1 81,193 - +0.3 81,223 - +0.6 81,270 - -1.5 81,310 + +0.2 81,350 + -1.2 81,371 - -3.0 81,498 + HMPREF1058_RS05780 0.11 -1.0 81,617 - HMPREF1058_RS05780 0.20 -1.7 81,622 - HMPREF1058_RS05780 0.20 +0.0 81,649 + HMPREF1058_RS05780 0.22 -4.3 81,649 + HMPREF1058_RS05780 0.22 -1.7 81,653 + HMPREF1058_RS05780 0.22 -2.0 81,653 + HMPREF1058_RS05780 0.22 -2.8 81,654 - HMPREF1058_RS05780 0.23 +0.0 81,670 + HMPREF1058_RS05780 0.24 -2.5 81,670 + HMPREF1058_RS05780 0.24 -1.7 81,671 - HMPREF1058_RS05780 0.24 -0.7 81,671 - HMPREF1058_RS05780 0.24 -3.5 81,752 - HMPREF1058_RS05780 0.30 -1.5 81,776 - HMPREF1058_RS05780 0.31 -2.9 81,822 - HMPREF1058_RS05780 0.34 -3.7 81,849 + HMPREF1058_RS05780 0.36 -4.2 81,880 - HMPREF1058_RS05780 0.39 -1.5 81,899 + HMPREF1058_RS05780 0.40 -3.6 81,945 + HMPREF1058_RS05780 0.43 -4.0 81,946 - HMPREF1058_RS05780 0.43 +1.6 81,946 - HMPREF1058_RS05780 0.43 -3.5 82,018 + HMPREF1058_RS05780 0.48 -5.5 82,050 - HMPREF1058_RS05780 0.51 -2.4 82,056 + HMPREF1058_RS05780 0.51 -2.1 82,057 - HMPREF1058_RS05780 0.51 -4.0 82,059 + HMPREF1058_RS05780 0.51 -4.2 82,059 + HMPREF1058_RS05780 0.51 -3.8 82,060 - HMPREF1058_RS05780 0.51 -3.4 82,113 + HMPREF1058_RS05780 0.55 -1.7 82,153 + HMPREF1058_RS05780 0.58 -3.9 82,154 - HMPREF1058_RS05780 0.58 -2.3 82,185 + HMPREF1058_RS05780 0.60 -2.4 82,186 - HMPREF1058_RS05780 0.60 -3.1 82,191 + HMPREF1058_RS05780 0.61 -1.8 82,191 + HMPREF1058_RS05780 0.61 -3.6 82,191 + HMPREF1058_RS05780 0.61 -4.7 82,191 + HMPREF1058_RS05780 0.61 -4.0 82,262 + HMPREF1058_RS05780 0.66 -2.8 82,267 - HMPREF1058_RS05780 0.66 -2.3 82,314 - HMPREF1058_RS05780 0.69 +1.6 82,365 - HMPREF1058_RS05780 0.73 -2.0 82,422 + HMPREF1058_RS05780 0.77 -2.6 82,468 + HMPREF1058_RS05780 0.80 -2.6 82,603 - HMPREF1058_RS05780 0.90 -3.6 82,603 - HMPREF1058_RS05780 0.90 -3.3 82,667 + -2.0 82,746 + +0.6 82,747 - +0.0 82,754 + -2.1 82,755 - -0.4 82,770 + -1.2 82,810 - HMPREF1058_RS05775 0.11 -0.5 82,810 - HMPREF1058_RS05775 0.11 +0.4 82,810 - HMPREF1058_RS05775 0.11 +1.3 82,874 + HMPREF1058_RS05775 0.24 -1.2 82,874 + HMPREF1058_RS05775 0.24 -2.6 82,874 + HMPREF1058_RS05775 0.24 -1.8 82,875 - HMPREF1058_RS05775 0.25 -0.5 82,875 - HMPREF1058_RS05775 0.25 +1.7 82,885 + HMPREF1058_RS05775 0.27 -2.0 82,975 - HMPREF1058_RS05775 0.46 +0.7 83,018 + HMPREF1058_RS05775 0.55 -0.1 83,019 - HMPREF1058_RS05775 0.55 +1.0 83,024 - HMPREF1058_RS05775 0.56 +0.3 83,025 + HMPREF1058_RS05775 0.56 -1.7 83,166 + HMPREF1058_RS05775 0.86 -0.3 83,167 - HMPREF1058_RS05775 0.87 -0.3 83,167 - HMPREF1058_RS05775 0.87 -0.4 83,244 - -2.8 83,292 + -3.0 83,293 - -1.5 83,298 - -0.2 83,359 + -1.3 83,372 - +0.3 83,391 - +1.7 83,391 - +0.7 83,409 + +0.1 83,433 + +0.3 83,434 - +0.3 83,434 - -2.6 83,437 - +0.7 83,622 - HMPREF1058_RS05770 0.25 +0.6 83,622 - HMPREF1058_RS05770 0.25 +1.4 83,622 - HMPREF1058_RS05770 0.25 +1.0 83,624 - HMPREF1058_RS05770 0.25 -0.4 83,662 - HMPREF1058_RS05770 0.29 -1.3 83,662 - HMPREF1058_RS05770 0.29 +0.2 83,737 - HMPREF1058_RS05770 0.36 +0.1
Or see this region's nucleotide sequence