Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05035

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05040 and HMPREF1058_RS05035 are separated by 313 nucleotidesHMPREF1058_RS05035 and HMPREF1058_RS05030 are separated by 42 nucleotides HMPREF1058_RS05040: HMPREF1058_RS05040 - phospho-sugar mutase, at 260,586 to 262,331 _RS05040 HMPREF1058_RS05035: HMPREF1058_RS05035 - C69 family dipeptidase, at 262,645 to 264,285 _RS05035 HMPREF1058_RS05030: HMPREF1058_RS05030 - M23 family metallopeptidase, at 264,328 to 265,998 _RS05030 Position (kb) 262 263 264 265Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 262.358 kb on - strandat 262.460 kb on - strandat 262.570 kb on - strandat 262.570 kb on - strandat 262.570 kb on - strandat 262.631 kb on + strandat 262.647 kb on - strandat 262.647 kb on - strandat 262.656 kb on + strandat 262.753 kb on + strandat 262.754 kb on - strandat 262.754 kb on - strandat 262.796 kb on + strandat 262.863 kb on + strand, within HMPREF1058_RS05035at 262.863 kb on + strand, within HMPREF1058_RS05035at 262.865 kb on + strand, within HMPREF1058_RS05035at 262.865 kb on + strand, within HMPREF1058_RS05035at 262.909 kb on + strand, within HMPREF1058_RS05035at 262.909 kb on + strand, within HMPREF1058_RS05035at 262.910 kb on - strand, within HMPREF1058_RS05035at 262.952 kb on + strand, within HMPREF1058_RS05035at 262.957 kb on - strand, within HMPREF1058_RS05035at 262.986 kb on + strand, within HMPREF1058_RS05035at 263.007 kb on - strand, within HMPREF1058_RS05035at 263.097 kb on - strand, within HMPREF1058_RS05035at 263.126 kb on + strand, within HMPREF1058_RS05035at 263.126 kb on + strand, within HMPREF1058_RS05035at 263.128 kb on + strand, within HMPREF1058_RS05035at 263.148 kb on + strand, within HMPREF1058_RS05035at 263.148 kb on + strand, within HMPREF1058_RS05035at 263.176 kb on + strand, within HMPREF1058_RS05035at 263.176 kb on + strand, within HMPREF1058_RS05035at 263.177 kb on - strand, within HMPREF1058_RS05035at 263.268 kb on - strand, within HMPREF1058_RS05035at 263.348 kb on - strand, within HMPREF1058_RS05035at 263.348 kb on - strand, within HMPREF1058_RS05035at 263.430 kb on - strand, within HMPREF1058_RS05035at 263.465 kb on + strand, within HMPREF1058_RS05035at 263.474 kb on + strand, within HMPREF1058_RS05035at 263.479 kb on - strand, within HMPREF1058_RS05035at 263.507 kb on + strand, within HMPREF1058_RS05035at 263.508 kb on - strand, within HMPREF1058_RS05035at 263.539 kb on + strand, within HMPREF1058_RS05035at 263.562 kb on + strand, within HMPREF1058_RS05035at 263.698 kb on - strand, within HMPREF1058_RS05035at 263.712 kb on + strand, within HMPREF1058_RS05035at 263.728 kb on - strand, within HMPREF1058_RS05035at 263.728 kb on - strand, within HMPREF1058_RS05035at 263.744 kb on - strand, within HMPREF1058_RS05035at 263.832 kb on + strand, within HMPREF1058_RS05035at 263.835 kb on - strand, within HMPREF1058_RS05035at 263.838 kb on - strand, within HMPREF1058_RS05035at 263.912 kb on + strand, within HMPREF1058_RS05035at 264.012 kb on + strand, within HMPREF1058_RS05035at 264.012 kb on + strand, within HMPREF1058_RS05035at 264.013 kb on - strand, within HMPREF1058_RS05035at 264.024 kb on + strand, within HMPREF1058_RS05035at 264.027 kb on - strand, within HMPREF1058_RS05035at 264.080 kb on + strand, within HMPREF1058_RS05035at 264.080 kb on + strand, within HMPREF1058_RS05035at 264.080 kb on + strand, within HMPREF1058_RS05035at 264.080 kb on + strand, within HMPREF1058_RS05035at 264.081 kb on - strand, within HMPREF1058_RS05035at 264.081 kb on - strand, within HMPREF1058_RS05035at 264.167 kb on - strandat 264.206 kb on - strandat 264.277 kb on - strandat 264.289 kb on + strandat 264.290 kb on - strandat 264.291 kb on + strandat 264.294 kb on - strandat 264.310 kb on - strandat 264.318 kb on + strandat 264.323 kb on + strandat 264.365 kb on - strandat 264.492 kb on + strandat 264.493 kb on - strandat 264.540 kb on + strand, within HMPREF1058_RS05030at 264.561 kb on + strand, within HMPREF1058_RS05030at 264.595 kb on + strand, within HMPREF1058_RS05030at 264.595 kb on + strand, within HMPREF1058_RS05030at 264.596 kb on - strand, within HMPREF1058_RS05030at 264.596 kb on - strand, within HMPREF1058_RS05030at 264.597 kb on + strand, within HMPREF1058_RS05030at 264.598 kb on - strand, within HMPREF1058_RS05030at 264.601 kb on + strand, within HMPREF1058_RS05030at 264.608 kb on + strand, within HMPREF1058_RS05030at 264.715 kb on - strand, within HMPREF1058_RS05030at 264.817 kb on - strand, within HMPREF1058_RS05030at 264.855 kb on - strand, within HMPREF1058_RS05030at 265.000 kb on - strand, within HMPREF1058_RS05030at 265.137 kb on + strand, within HMPREF1058_RS05030at 265.138 kb on - strand, within HMPREF1058_RS05030at 265.244 kb on + strand, within HMPREF1058_RS05030at 265.245 kb on - strand, within HMPREF1058_RS05030at 265.245 kb on - strand, within HMPREF1058_RS05030at 265.245 kb on - strand, within HMPREF1058_RS05030at 265.268 kb on + strand, within HMPREF1058_RS05030

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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262,358 - -1.5
262,460 - -0.1
262,570 - -1.4
262,570 - -1.6
262,570 - +1.0
262,631 + -0.0
262,647 - +1.4
262,647 - +0.4
262,656 + -3.5
262,753 + -3.2
262,754 - -2.3
262,754 - -3.9
262,796 + -1.8
262,863 + HMPREF1058_RS05035 0.13 +0.4
262,863 + HMPREF1058_RS05035 0.13 -2.6
262,865 + HMPREF1058_RS05035 0.13 -3.2
262,865 + HMPREF1058_RS05035 0.13 -1.9
262,909 + HMPREF1058_RS05035 0.16 -4.8
262,909 + HMPREF1058_RS05035 0.16 +1.6
262,910 - HMPREF1058_RS05035 0.16 -3.1
262,952 + HMPREF1058_RS05035 0.19 +0.8
262,957 - HMPREF1058_RS05035 0.19 -4.0
262,986 + HMPREF1058_RS05035 0.21 -3.6
263,007 - HMPREF1058_RS05035 0.22 -3.4
263,097 - HMPREF1058_RS05035 0.28 -3.2
263,126 + HMPREF1058_RS05035 0.29 -1.6
263,126 + HMPREF1058_RS05035 0.29 -3.7
263,128 + HMPREF1058_RS05035 0.29 -0.4
263,148 + HMPREF1058_RS05035 0.31 -4.1
263,148 + HMPREF1058_RS05035 0.31 -1.4
263,176 + HMPREF1058_RS05035 0.32 -2.6
263,176 + HMPREF1058_RS05035 0.32 -1.4
263,177 - HMPREF1058_RS05035 0.32 -2.8
263,268 - HMPREF1058_RS05035 0.38 -4.3
263,348 - HMPREF1058_RS05035 0.43 -2.9
263,348 - HMPREF1058_RS05035 0.43 -2.6
263,430 - HMPREF1058_RS05035 0.48 -3.2
263,465 + HMPREF1058_RS05035 0.50 -1.5
263,474 + HMPREF1058_RS05035 0.51 -2.6
263,479 - HMPREF1058_RS05035 0.51 -2.4
263,507 + HMPREF1058_RS05035 0.53 -4.0
263,508 - HMPREF1058_RS05035 0.53 -3.6
263,539 + HMPREF1058_RS05035 0.54 -4.1
263,562 + HMPREF1058_RS05035 0.56 -4.2
263,698 - HMPREF1058_RS05035 0.64 -4.2
263,712 + HMPREF1058_RS05035 0.65 -1.0
263,728 - HMPREF1058_RS05035 0.66 -3.2
263,728 - HMPREF1058_RS05035 0.66 -4.0
263,744 - HMPREF1058_RS05035 0.67 -2.7
263,832 + HMPREF1058_RS05035 0.72 -2.3
263,835 - HMPREF1058_RS05035 0.73 -2.9
263,838 - HMPREF1058_RS05035 0.73 -0.8
263,912 + HMPREF1058_RS05035 0.77 -0.7
264,012 + HMPREF1058_RS05035 0.83 -3.3
264,012 + HMPREF1058_RS05035 0.83 -0.7
264,013 - HMPREF1058_RS05035 0.83 -3.4
264,024 + HMPREF1058_RS05035 0.84 -1.5
264,027 - HMPREF1058_RS05035 0.84 -4.2
264,080 + HMPREF1058_RS05035 0.87 -1.8
264,080 + HMPREF1058_RS05035 0.87 +1.6
264,080 + HMPREF1058_RS05035 0.87 -2.9
264,080 + HMPREF1058_RS05035 0.87 -3.0
264,081 - HMPREF1058_RS05035 0.88 -2.2
264,081 - HMPREF1058_RS05035 0.88 -1.7
264,167 - +0.0
264,206 - -2.0
264,277 - -3.0
264,289 + -2.0
264,290 - -3.4
264,291 + -1.1
264,294 - -2.1
264,310 - -0.7
264,318 + -1.8
264,323 + -2.9
264,365 - +0.1
264,492 + -2.7
264,493 - +0.1
264,540 + HMPREF1058_RS05030 0.13 -3.6
264,561 + HMPREF1058_RS05030 0.14 -0.7
264,595 + HMPREF1058_RS05030 0.16 -1.7
264,595 + HMPREF1058_RS05030 0.16 -3.9
264,596 - HMPREF1058_RS05030 0.16 -3.2
264,596 - HMPREF1058_RS05030 0.16 -0.0
264,597 + HMPREF1058_RS05030 0.16 -1.2
264,598 - HMPREF1058_RS05030 0.16 -1.4
264,601 + HMPREF1058_RS05030 0.16 -2.2
264,608 + HMPREF1058_RS05030 0.17 -2.2
264,715 - HMPREF1058_RS05030 0.23 -0.6
264,817 - HMPREF1058_RS05030 0.29 +0.3
264,855 - HMPREF1058_RS05030 0.32 -0.4
265,000 - HMPREF1058_RS05030 0.40 +0.9
265,137 + HMPREF1058_RS05030 0.48 -2.8
265,138 - HMPREF1058_RS05030 0.48 -1.4
265,244 + HMPREF1058_RS05030 0.55 -3.8
265,245 - HMPREF1058_RS05030 0.55 -0.1
265,245 - HMPREF1058_RS05030 0.55 +1.3
265,245 - HMPREF1058_RS05030 0.55 -1.2
265,268 + HMPREF1058_RS05030 0.56 -1.5

Or see this region's nucleotide sequence