Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03275 and HMPREF1058_RS03270 overlap by 1 nucleotides HMPREF1058_RS03270 and HMPREF1058_RS03265 are separated by 85 nucleotides HMPREF1058_RS03265 and HMPREF1058_RS03260 are separated by 78 nucleotides HMPREF1058_RS03260 and HMPREF1058_RS03255 are separated by 112 nucleotides
HMPREF1058_RS03275: HMPREF1058_RS03275 - hypothetical protein, at 316,962 to 317,477
_RS03275
HMPREF1058_RS03270: HMPREF1058_RS03270 - flavodoxin family protein, at 317,477 to 318,049
_RS03270
HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265
_RS03265
HMPREF1058_RS03260: HMPREF1058_RS03260 - HesA/MoeB/ThiF family protein, at 319,344 to 320,036
_RS03260
HMPREF1058_RS03255: HMPREF1058_RS03255 - glutathionylspermidine synthase family protein, at 320,149 to 321,273
_RS03255
Position (kb) 318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 317.350 kb on - strand, within HMPREF1058_RS03275 at 317.421 kb on + strand, within HMPREF1058_RS03275 at 317.425 kb on - strand, within HMPREF1058_RS03275 at 317.476 kb on - strand at 317.484 kb on + strand at 317.601 kb on - strand, within HMPREF1058_RS03270 at 317.694 kb on + strand, within HMPREF1058_RS03270 at 317.764 kb on - strand, within HMPREF1058_RS03270 at 317.884 kb on + strand, within HMPREF1058_RS03270 at 317.914 kb on - strand, within HMPREF1058_RS03270 at 318.033 kb on + strand at 318.084 kb on + strand at 318.094 kb on + strand at 318.095 kb on - strand at 318.119 kb on + strand at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.368 kb on + strand, within HMPREF1058_RS03265 at 318.399 kb on + strand, within HMPREF1058_RS03265 at 318.434 kb on + strand, within HMPREF1058_RS03265 at 318.469 kb on - strand, within HMPREF1058_RS03265 at 318.550 kb on - strand, within HMPREF1058_RS03265 at 318.601 kb on + strand, within HMPREF1058_RS03265 at 318.607 kb on + strand, within HMPREF1058_RS03265 at 318.631 kb on - strand, within HMPREF1058_RS03265 at 318.685 kb on - strand, within HMPREF1058_RS03265 at 318.701 kb on + strand, within HMPREF1058_RS03265 at 318.702 kb on - strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.708 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.856 kb on + strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 319.012 kb on + strand, within HMPREF1058_RS03265 at 319.016 kb on + strand, within HMPREF1058_RS03265 at 319.023 kb on + strand, within HMPREF1058_RS03265 at 319.069 kb on + strand, within HMPREF1058_RS03265 at 319.119 kb on + strand, within HMPREF1058_RS03265 at 319.119 kb on + strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.122 kb on - strand, within HMPREF1058_RS03265 at 319.167 kb on - strand at 319.259 kb on - strand at 319.263 kb on + strand at 319.298 kb on + strand at 319.300 kb on + strand at 319.300 kb on + strand at 319.301 kb on - strand at 319.424 kb on + strand, within HMPREF1058_RS03260 at 319.425 kb on - strand, within HMPREF1058_RS03260 at 319.483 kb on + strand, within HMPREF1058_RS03260 at 319.516 kb on + strand, within HMPREF1058_RS03260 at 319.621 kb on + strand, within HMPREF1058_RS03260 at 319.683 kb on + strand, within HMPREF1058_RS03260 at 319.696 kb on + strand, within HMPREF1058_RS03260 at 319.697 kb on - strand at 319.730 kb on + strand, within HMPREF1058_RS03260 at 319.731 kb on - strand, within HMPREF1058_RS03260 at 319.739 kb on + strand, within HMPREF1058_RS03260 at 319.740 kb on - strand, within HMPREF1058_RS03260 at 319.768 kb on + strand, within HMPREF1058_RS03260 at 319.768 kb on + strand, within HMPREF1058_RS03260 at 319.769 kb on - strand, within HMPREF1058_RS03260 at 319.770 kb on + strand, within HMPREF1058_RS03260 at 319.770 kb on + strand, within HMPREF1058_RS03260 at 319.898 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.952 kb on + strand, within HMPREF1058_RS03260 at 319.962 kb on + strand, within HMPREF1058_RS03260 at 319.987 kb on + strand at 320.002 kb on + strand at 320.068 kb on + strand at 320.160 kb on + strand at 320.160 kb on + strand at 320.160 kb on + strand at 320.161 kb on - strand at 320.161 kb on - strand at 320.161 kb on - strand at 320.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 317,350 - HMPREF1058_RS03275 0.75 -0.3 317,421 + HMPREF1058_RS03275 0.89 -0.2 317,425 - HMPREF1058_RS03275 0.90 -0.3 317,476 - -0.1 317,484 + -0.1 317,601 - HMPREF1058_RS03270 0.22 -0.8 317,694 + HMPREF1058_RS03270 0.38 -0.0 317,764 - HMPREF1058_RS03270 0.50 -2.3 317,884 + HMPREF1058_RS03270 0.71 +0.5 317,914 - HMPREF1058_RS03270 0.76 -1.6 318,033 + -0.3 318,084 + -1.1 318,094 + -2.9 318,095 - +0.1 318,119 + -0.3 318,367 - HMPREF1058_RS03265 0.21 -1.6 318,367 - HMPREF1058_RS03265 0.21 -0.9 318,368 + HMPREF1058_RS03265 0.21 -1.5 318,399 + HMPREF1058_RS03265 0.23 -1.2 318,434 + HMPREF1058_RS03265 0.26 -3.0 318,469 - HMPREF1058_RS03265 0.30 -1.5 318,550 - HMPREF1058_RS03265 0.37 -3.0 318,601 + HMPREF1058_RS03265 0.41 -3.5 318,607 + HMPREF1058_RS03265 0.42 -1.2 318,631 - HMPREF1058_RS03265 0.44 -1.7 318,685 - HMPREF1058_RS03265 0.49 -1.5 318,701 + HMPREF1058_RS03265 0.50 -1.1 318,702 - HMPREF1058_RS03265 0.50 -2.8 318,706 + HMPREF1058_RS03265 0.50 -2.7 318,706 + HMPREF1058_RS03265 0.50 -1.4 318,707 - HMPREF1058_RS03265 0.51 -2.5 318,707 - HMPREF1058_RS03265 0.51 -2.1 318,708 + HMPREF1058_RS03265 0.51 -3.1 318,802 + HMPREF1058_RS03265 0.59 -2.3 318,802 + HMPREF1058_RS03265 0.59 -1.8 318,856 + HMPREF1058_RS03265 0.64 +0.1 318,892 - HMPREF1058_RS03265 0.67 -2.1 318,892 - HMPREF1058_RS03265 0.67 +0.1 319,012 + HMPREF1058_RS03265 0.78 -2.4 319,016 + HMPREF1058_RS03265 0.78 -0.1 319,023 + HMPREF1058_RS03265 0.79 -2.1 319,069 + HMPREF1058_RS03265 0.83 -3.0 319,119 + HMPREF1058_RS03265 0.87 -2.0 319,119 + HMPREF1058_RS03265 0.87 -2.1 319,120 - HMPREF1058_RS03265 0.87 -0.7 319,120 - HMPREF1058_RS03265 0.87 -1.0 319,120 - HMPREF1058_RS03265 0.87 -2.1 319,121 + HMPREF1058_RS03265 0.87 -2.3 319,121 + HMPREF1058_RS03265 0.87 -1.4 319,121 + HMPREF1058_RS03265 0.87 +0.7 319,122 - HMPREF1058_RS03265 0.87 -2.0 319,167 - -2.5 319,259 - -1.9 319,263 + -1.3 319,298 + -1.3 319,300 + +1.0 319,300 + +1.7 319,301 - -2.1 319,424 + HMPREF1058_RS03260 0.12 -1.1 319,425 - HMPREF1058_RS03260 0.12 +2.7 319,483 + HMPREF1058_RS03260 0.20 -3.1 319,516 + HMPREF1058_RS03260 0.25 -2.2 319,621 + HMPREF1058_RS03260 0.40 +1.3 319,683 + HMPREF1058_RS03260 0.49 -1.1 319,696 + HMPREF1058_RS03260 0.51 -0.8 319,697 - -0.7 319,730 + HMPREF1058_RS03260 0.56 -1.8 319,731 - HMPREF1058_RS03260 0.56 -0.6 319,739 + HMPREF1058_RS03260 0.57 -1.3 319,740 - HMPREF1058_RS03260 0.57 -4.0 319,768 + HMPREF1058_RS03260 0.61 -3.4 319,768 + HMPREF1058_RS03260 0.61 -0.8 319,769 - HMPREF1058_RS03260 0.61 -2.6 319,770 + HMPREF1058_RS03260 0.61 -3.7 319,770 + HMPREF1058_RS03260 0.61 -3.1 319,898 - HMPREF1058_RS03260 0.80 -2.1 319,919 - HMPREF1058_RS03260 0.83 -0.1 319,919 - HMPREF1058_RS03260 0.83 +2.7 319,919 - HMPREF1058_RS03260 0.83 -1.0 319,919 - HMPREF1058_RS03260 0.83 -2.2 319,952 + HMPREF1058_RS03260 0.88 -2.3 319,962 + HMPREF1058_RS03260 0.89 -1.6 319,987 + -3.0 320,002 + -2.5 320,068 + -0.6 320,160 + -1.2 320,160 + +0.4 320,160 + -0.8 320,161 - -1.5 320,161 - -1.5 320,161 - +1.2 320,239 + +1.0
Or see this region's nucleotide sequence