Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02140 and HMPREF1058_RS02135 are separated by 234 nucleotides HMPREF1058_RS02135 and HMPREF1058_RS02130 are separated by 109 nucleotides
HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694
_RS02140
HMPREF1058_RS02135: HMPREF1058_RS02135 - phosphoenolpyruvate synthase, at 273,929 to 276,886
_RS02135
HMPREF1058_RS02130: HMPREF1058_RS02130 - hypothetical protein, at 276,996 to 278,138
_RS02130
Position (kb)
273
274
275
276
277 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 272.959 kb on + strand, within HMPREF1058_RS02140 at 273.016 kb on + strand, within HMPREF1058_RS02140 at 273.137 kb on - strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.175 kb on - strand, within HMPREF1058_RS02140 at 273.175 kb on - strand, within HMPREF1058_RS02140 at 273.179 kb on + strand, within HMPREF1058_RS02140 at 273.337 kb on + strand, within HMPREF1058_RS02140 at 273.405 kb on - strand, within HMPREF1058_RS02140 at 273.473 kb on + strand, within HMPREF1058_RS02140 at 273.529 kb on + strand, within HMPREF1058_RS02140 at 273.591 kb on + strand at 273.591 kb on + strand at 273.591 kb on + strand at 273.595 kb on + strand at 273.595 kb on + strand at 273.596 kb on - strand at 273.636 kb on + strand at 273.698 kb on + strand at 273.699 kb on - strand at 273.750 kb on - strand at 273.864 kb on - strand at 273.881 kb on - strand at 273.960 kb on - strand at 274.042 kb on + strand at 274.088 kb on + strand at 274.089 kb on - strand at 274.090 kb on + strand at 274.171 kb on + strand at 274.171 kb on + strand at 274.258 kb on + strand, within HMPREF1058_RS02135 at 274.259 kb on - strand, within HMPREF1058_RS02135 at 274.337 kb on + strand, within HMPREF1058_RS02135 at 274.372 kb on - strand, within HMPREF1058_RS02135 at 274.378 kb on + strand, within HMPREF1058_RS02135 at 274.379 kb on - strand, within HMPREF1058_RS02135 at 274.393 kb on - strand, within HMPREF1058_RS02135 at 274.629 kb on - strand, within HMPREF1058_RS02135 at 274.634 kb on - strand, within HMPREF1058_RS02135 at 274.634 kb on - strand, within HMPREF1058_RS02135 at 274.653 kb on + strand, within HMPREF1058_RS02135 at 274.654 kb on - strand, within HMPREF1058_RS02135 at 274.654 kb on - strand, within HMPREF1058_RS02135 at 274.760 kb on - strand, within HMPREF1058_RS02135 at 274.779 kb on + strand, within HMPREF1058_RS02135 at 274.793 kb on + strand, within HMPREF1058_RS02135 at 274.793 kb on + strand, within HMPREF1058_RS02135 at 274.793 kb on + strand, within HMPREF1058_RS02135 at 274.794 kb on - strand, within HMPREF1058_RS02135 at 274.794 kb on - strand, within HMPREF1058_RS02135 at 274.794 kb on - strand, within HMPREF1058_RS02135 at 274.813 kb on + strand, within HMPREF1058_RS02135 at 274.849 kb on - strand, within HMPREF1058_RS02135 at 275.113 kb on + strand, within HMPREF1058_RS02135 at 275.262 kb on + strand, within HMPREF1058_RS02135 at 275.382 kb on + strand, within HMPREF1058_RS02135 at 275.382 kb on + strand, within HMPREF1058_RS02135 at 275.383 kb on - strand, within HMPREF1058_RS02135 at 275.383 kb on - strand, within HMPREF1058_RS02135 at 275.564 kb on + strand, within HMPREF1058_RS02135 at 275.565 kb on - strand, within HMPREF1058_RS02135 at 275.585 kb on + strand, within HMPREF1058_RS02135 at 275.589 kb on + strand, within HMPREF1058_RS02135 at 275.601 kb on - strand, within HMPREF1058_RS02135 at 275.642 kb on + strand, within HMPREF1058_RS02135 at 275.643 kb on - strand, within HMPREF1058_RS02135 at 275.676 kb on - strand, within HMPREF1058_RS02135 at 275.676 kb on - strand, within HMPREF1058_RS02135 at 275.678 kb on - strand, within HMPREF1058_RS02135 at 275.765 kb on + strand, within HMPREF1058_RS02135 at 275.801 kb on + strand, within HMPREF1058_RS02135 at 275.841 kb on + strand, within HMPREF1058_RS02135 at 275.841 kb on + strand, within HMPREF1058_RS02135 at 275.863 kb on + strand, within HMPREF1058_RS02135 at 275.863 kb on + strand, within HMPREF1058_RS02135 at 275.867 kb on + strand, within HMPREF1058_RS02135 at 275.867 kb on - strand, within HMPREF1058_RS02135 at 275.868 kb on - strand, within HMPREF1058_RS02135 at 275.869 kb on + strand, within HMPREF1058_RS02135 at 275.870 kb on - strand, within HMPREF1058_RS02135 at 275.875 kb on - strand, within HMPREF1058_RS02135 at 275.943 kb on - strand, within HMPREF1058_RS02135 at 275.976 kb on - strand, within HMPREF1058_RS02135 at 276.095 kb on + strand, within HMPREF1058_RS02135 at 276.096 kb on - strand, within HMPREF1058_RS02135 at 276.096 kb on - strand, within HMPREF1058_RS02135 at 276.096 kb on - strand, within HMPREF1058_RS02135 at 276.109 kb on + strand, within HMPREF1058_RS02135 at 276.109 kb on - strand, within HMPREF1058_RS02135 at 276.110 kb on - strand, within HMPREF1058_RS02135 at 276.183 kb on + strand, within HMPREF1058_RS02135 at 276.184 kb on - strand, within HMPREF1058_RS02135 at 276.256 kb on - strand, within HMPREF1058_RS02135 at 276.302 kb on + strand, within HMPREF1058_RS02135 at 276.303 kb on - strand, within HMPREF1058_RS02135 at 276.365 kb on - strand, within HMPREF1058_RS02135 at 276.388 kb on - strand, within HMPREF1058_RS02135 at 276.463 kb on + strand, within HMPREF1058_RS02135 at 276.464 kb on - strand, within HMPREF1058_RS02135 at 276.476 kb on - strand, within HMPREF1058_RS02135 at 276.499 kb on - strand, within HMPREF1058_RS02135 at 276.541 kb on + strand, within HMPREF1058_RS02135 at 276.541 kb on + strand, within HMPREF1058_RS02135 at 276.541 kb on + strand, within HMPREF1058_RS02135 at 276.542 kb on - strand, within HMPREF1058_RS02135 at 276.543 kb on + strand, within HMPREF1058_RS02135 at 276.543 kb on + strand, within HMPREF1058_RS02135 at 276.543 kb on + strand, within HMPREF1058_RS02135 at 276.544 kb on - strand, within HMPREF1058_RS02135 at 276.544 kb on - strand, within HMPREF1058_RS02135 at 276.549 kb on + strand, within HMPREF1058_RS02135 at 276.650 kb on - strand at 276.654 kb on - strand at 276.734 kb on + strand at 276.736 kb on + strand at 276.749 kb on - strand at 276.749 kb on - strand at 276.752 kb on + strand at 276.885 kb on - strand at 276.936 kb on - strand at 276.949 kb on + strand at 276.954 kb on + strand at 277.015 kb on - strand at 277.017 kb on + strand at 277.076 kb on + strand at 277.077 kb on - strand at 277.110 kb on - strand at 277.138 kb on - strand, within HMPREF1058_RS02130 at 277.140 kb on - strand at 277.148 kb on + strand, within HMPREF1058_RS02130 at 277.149 kb on - strand, within HMPREF1058_RS02130 at 277.157 kb on - strand, within HMPREF1058_RS02130 at 277.301 kb on + strand, within HMPREF1058_RS02130 at 277.330 kb on + strand, within HMPREF1058_RS02130 at 277.475 kb on + strand, within HMPREF1058_RS02130 at 277.513 kb on - strand, within HMPREF1058_RS02130 at 277.740 kb on + strand, within HMPREF1058_RS02130 at 277.764 kb on + strand, within HMPREF1058_RS02130 at 277.790 kb on - strand, within HMPREF1058_RS02130 at 277.801 kb on + strand, within HMPREF1058_RS02130 at 277.852 kb on + strand, within HMPREF1058_RS02130 at 277.853 kb on - strand, within HMPREF1058_RS02130 at 277.856 kb on - strand, within HMPREF1058_RS02130 at 277.860 kb on - strand, within HMPREF1058_RS02130 at 277.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 272,959 + HMPREF1058_RS02140 0.45 +3.1 273,016 + HMPREF1058_RS02140 0.49 -0.9 273,137 - HMPREF1058_RS02140 0.58 -1.3 273,174 + HMPREF1058_RS02140 0.61 +0.9 273,174 + HMPREF1058_RS02140 0.61 +0.9 273,174 + HMPREF1058_RS02140 0.61 +1.0 273,175 - HMPREF1058_RS02140 0.61 +0.6 273,175 - HMPREF1058_RS02140 0.61 +0.4 273,179 + HMPREF1058_RS02140 0.61 +1.1 273,337 + HMPREF1058_RS02140 0.73 -1.4 273,405 - HMPREF1058_RS02140 0.78 +0.7 273,473 + HMPREF1058_RS02140 0.83 +1.3 273,529 + HMPREF1058_RS02140 0.88 +0.2 273,591 + -1.0 273,591 + +0.7 273,591 + +0.3 273,595 + +1.0 273,595 + -0.0 273,596 - +1.1 273,636 + +1.5 273,698 + +1.3 273,699 - -0.6 273,750 - -1.3 273,864 - -0.2 273,881 - -4.2 273,960 - -2.5 274,042 + -1.3 274,088 + -0.1 274,089 - -1.6 274,090 + -0.7 274,171 + +0.3 274,171 + -0.0 274,258 + HMPREF1058_RS02135 0.11 -1.7 274,259 - HMPREF1058_RS02135 0.11 -2.1 274,337 + HMPREF1058_RS02135 0.14 -0.4 274,372 - HMPREF1058_RS02135 0.15 -2.1 274,378 + HMPREF1058_RS02135 0.15 +1.2 274,379 - HMPREF1058_RS02135 0.15 -2.3 274,393 - HMPREF1058_RS02135 0.16 -3.3 274,629 - HMPREF1058_RS02135 0.24 -1.9 274,634 - HMPREF1058_RS02135 0.24 -2.1 274,634 - HMPREF1058_RS02135 0.24 -3.6 274,653 + HMPREF1058_RS02135 0.24 -2.8 274,654 - HMPREF1058_RS02135 0.25 -2.7 274,654 - HMPREF1058_RS02135 0.25 -2.7 274,760 - HMPREF1058_RS02135 0.28 -3.6 274,779 + HMPREF1058_RS02135 0.29 -0.3 274,793 + HMPREF1058_RS02135 0.29 -0.2 274,793 + HMPREF1058_RS02135 0.29 -2.0 274,793 + HMPREF1058_RS02135 0.29 +0.3 274,794 - HMPREF1058_RS02135 0.29 -4.2 274,794 - HMPREF1058_RS02135 0.29 -2.4 274,794 - HMPREF1058_RS02135 0.29 -2.5 274,813 + HMPREF1058_RS02135 0.30 -1.7 274,849 - HMPREF1058_RS02135 0.31 -0.9 275,113 + HMPREF1058_RS02135 0.40 -1.2 275,262 + HMPREF1058_RS02135 0.45 -2.5 275,382 + HMPREF1058_RS02135 0.49 -1.8 275,382 + HMPREF1058_RS02135 0.49 -3.3 275,383 - HMPREF1058_RS02135 0.49 -2.0 275,383 - HMPREF1058_RS02135 0.49 -2.7 275,564 + HMPREF1058_RS02135 0.55 -2.4 275,565 - HMPREF1058_RS02135 0.55 -2.1 275,585 + HMPREF1058_RS02135 0.56 -0.9 275,589 + HMPREF1058_RS02135 0.56 -2.0 275,601 - HMPREF1058_RS02135 0.57 -2.3 275,642 + HMPREF1058_RS02135 0.58 -2.5 275,643 - HMPREF1058_RS02135 0.58 -0.9 275,676 - HMPREF1058_RS02135 0.59 -3.0 275,676 - HMPREF1058_RS02135 0.59 -0.8 275,678 - HMPREF1058_RS02135 0.59 -2.1 275,765 + HMPREF1058_RS02135 0.62 -2.3 275,801 + HMPREF1058_RS02135 0.63 -2.5 275,841 + HMPREF1058_RS02135 0.65 -2.7 275,841 + HMPREF1058_RS02135 0.65 -2.5 275,863 + HMPREF1058_RS02135 0.65 -1.7 275,863 + HMPREF1058_RS02135 0.65 -1.1 275,867 + HMPREF1058_RS02135 0.66 -1.7 275,867 - HMPREF1058_RS02135 0.66 -1.5 275,868 - HMPREF1058_RS02135 0.66 -1.6 275,869 + HMPREF1058_RS02135 0.66 -4.8 275,870 - HMPREF1058_RS02135 0.66 -1.4 275,875 - HMPREF1058_RS02135 0.66 -1.8 275,943 - HMPREF1058_RS02135 0.68 -2.5 275,976 - HMPREF1058_RS02135 0.69 -3.1 276,095 + HMPREF1058_RS02135 0.73 -2.8 276,096 - HMPREF1058_RS02135 0.73 -3.2 276,096 - HMPREF1058_RS02135 0.73 -1.7 276,096 - HMPREF1058_RS02135 0.73 -3.2 276,109 + HMPREF1058_RS02135 0.74 -0.4 276,109 - HMPREF1058_RS02135 0.74 -2.3 276,110 - HMPREF1058_RS02135 0.74 +1.6 276,183 + HMPREF1058_RS02135 0.76 -3.1 276,184 - HMPREF1058_RS02135 0.76 -3.9 276,256 - HMPREF1058_RS02135 0.79 -2.0 276,302 + HMPREF1058_RS02135 0.80 -2.3 276,303 - HMPREF1058_RS02135 0.80 -3.2 276,365 - HMPREF1058_RS02135 0.82 -2.6 276,388 - HMPREF1058_RS02135 0.83 -1.6 276,463 + HMPREF1058_RS02135 0.86 -0.7 276,464 - HMPREF1058_RS02135 0.86 -2.9 276,476 - HMPREF1058_RS02135 0.86 -0.4 276,499 - HMPREF1058_RS02135 0.87 -1.7 276,541 + HMPREF1058_RS02135 0.88 -1.7 276,541 + HMPREF1058_RS02135 0.88 -0.9 276,541 + HMPREF1058_RS02135 0.88 -2.9 276,542 - HMPREF1058_RS02135 0.88 -3.0 276,543 + HMPREF1058_RS02135 0.88 -1.7 276,543 + HMPREF1058_RS02135 0.88 -3.8 276,543 + HMPREF1058_RS02135 0.88 -0.6 276,544 - HMPREF1058_RS02135 0.88 -1.5 276,544 - HMPREF1058_RS02135 0.88 -2.0 276,549 + HMPREF1058_RS02135 0.89 -2.6 276,650 - -2.2 276,654 - -2.2 276,734 + -3.0 276,736 + +1.2 276,749 - -2.2 276,749 - -2.5 276,752 + -2.5 276,885 - -0.7 276,936 - +0.3 276,949 + -0.4 276,954 + -1.6 277,015 - +0.8 277,017 + -1.9 277,076 + -0.8 277,077 - +0.8 277,110 - -0.3 277,138 - HMPREF1058_RS02130 0.12 +0.5 277,140 - -1.1 277,148 + HMPREF1058_RS02130 0.13 -0.8 277,149 - HMPREF1058_RS02130 0.13 +0.7 277,157 - HMPREF1058_RS02130 0.14 +0.2 277,301 + HMPREF1058_RS02130 0.27 -1.0 277,330 + HMPREF1058_RS02130 0.29 -0.3 277,475 + HMPREF1058_RS02130 0.42 -0.5 277,513 - HMPREF1058_RS02130 0.45 -0.8 277,740 + HMPREF1058_RS02130 0.65 -0.9 277,764 + HMPREF1058_RS02130 0.67 -1.0 277,790 - HMPREF1058_RS02130 0.69 +0.7 277,801 + HMPREF1058_RS02130 0.70 -2.8 277,852 + HMPREF1058_RS02130 0.75 +0.3 277,853 - HMPREF1058_RS02130 0.75 -0.6 277,856 - HMPREF1058_RS02130 0.75 +0.7 277,860 - HMPREF1058_RS02130 0.76 -2.0 277,864 + -1.7
Or see this region's nucleotide sequence