Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02070

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02075 and HMPREF1058_RS02070 are separated by 81 nucleotidesHMPREF1058_RS02070 and HMPREF1058_RS02065 are separated by 72 nucleotidesHMPREF1058_RS02065 and HMPREF1058_RS02060 are separated by 136 nucleotides HMPREF1058_RS02075: HMPREF1058_RS02075 - efflux RND transporter periplasmic adaptor subunit, at 295,291 to 296,313 _RS02075 HMPREF1058_RS02070: HMPREF1058_RS02070 - efflux RND transporter permease subunit, at 296,395 to 299,565 _RS02070 HMPREF1058_RS02065: HMPREF1058_RS02065 - hypothetical protein, at 299,638 to 299,931 _RS02065 HMPREF1058_RS02060: HMPREF1058_RS02060 - SGNH/GDSL hydrolase family protein, at 300,068 to 301,435 _RS02060 Position (kb) 296 297 298 299 300Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 295.436 kb on + strand, within HMPREF1058_RS02075at 295.446 kb on - strand, within HMPREF1058_RS02075at 295.453 kb on + strand, within HMPREF1058_RS02075at 295.455 kb on + strand, within HMPREF1058_RS02075at 295.521 kb on + strand, within HMPREF1058_RS02075at 295.547 kb on + strand, within HMPREF1058_RS02075at 295.639 kb on - strand, within HMPREF1058_RS02075at 295.710 kb on - strand, within HMPREF1058_RS02075at 295.723 kb on + strand, within HMPREF1058_RS02075at 295.724 kb on - strand, within HMPREF1058_RS02075at 295.743 kb on + strand, within HMPREF1058_RS02075at 295.806 kb on - strand, within HMPREF1058_RS02075at 295.886 kb on - strand, within HMPREF1058_RS02075at 295.908 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 295.936 kb on + strand, within HMPREF1058_RS02075at 296.001 kb on + strand, within HMPREF1058_RS02075at 296.018 kb on + strand, within HMPREF1058_RS02075at 296.153 kb on + strand, within HMPREF1058_RS02075at 296.154 kb on - strand, within HMPREF1058_RS02075at 296.221 kb on + strandat 296.332 kb on + strandat 296.333 kb on - strandat 296.346 kb on + strandat 296.354 kb on + strandat 296.354 kb on + strandat 296.355 kb on - strandat 296.355 kb on - strandat 296.355 kb on - strandat 296.356 kb on + strandat 296.441 kb on + strandat 296.517 kb on + strandat 296.536 kb on - strandat 296.631 kb on + strandat 296.632 kb on - strandat 296.632 kb on - strandat 296.635 kb on - strandat 296.635 kb on - strandat 296.656 kb on - strandat 296.690 kb on - strandat 296.781 kb on + strand, within HMPREF1058_RS02070at 296.852 kb on - strand, within HMPREF1058_RS02070at 296.858 kb on + strand, within HMPREF1058_RS02070at 296.869 kb on - strand, within HMPREF1058_RS02070at 296.874 kb on - strand, within HMPREF1058_RS02070at 296.946 kb on + strand, within HMPREF1058_RS02070at 296.951 kb on - strand, within HMPREF1058_RS02070at 296.951 kb on - strand, within HMPREF1058_RS02070at 296.977 kb on + strand, within HMPREF1058_RS02070at 297.024 kb on + strand, within HMPREF1058_RS02070at 297.030 kb on + strand, within HMPREF1058_RS02070at 297.031 kb on - strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.063 kb on + strand, within HMPREF1058_RS02070at 297.064 kb on - strand, within HMPREF1058_RS02070at 297.064 kb on - strand, within HMPREF1058_RS02070at 297.068 kb on - strand, within HMPREF1058_RS02070at 297.122 kb on + strand, within HMPREF1058_RS02070at 297.122 kb on + strand, within HMPREF1058_RS02070at 297.151 kb on + strand, within HMPREF1058_RS02070at 297.209 kb on - strand, within HMPREF1058_RS02070at 297.211 kb on - strand, within HMPREF1058_RS02070at 297.242 kb on + strand, within HMPREF1058_RS02070at 297.242 kb on + strand, within HMPREF1058_RS02070at 297.288 kb on - strand, within HMPREF1058_RS02070at 297.303 kb on + strand, within HMPREF1058_RS02070at 297.304 kb on - strand, within HMPREF1058_RS02070at 297.366 kb on + strand, within HMPREF1058_RS02070at 297.400 kb on - strand, within HMPREF1058_RS02070at 297.403 kb on - strand, within HMPREF1058_RS02070at 297.407 kb on - strand, within HMPREF1058_RS02070at 297.471 kb on + strand, within HMPREF1058_RS02070at 297.471 kb on + strand, within HMPREF1058_RS02070at 297.477 kb on + strand, within HMPREF1058_RS02070at 297.801 kb on + strand, within HMPREF1058_RS02070at 297.813 kb on + strand, within HMPREF1058_RS02070at 297.883 kb on - strand, within HMPREF1058_RS02070at 298.185 kb on + strand, within HMPREF1058_RS02070at 298.196 kb on - strand, within HMPREF1058_RS02070at 298.196 kb on - strand, within HMPREF1058_RS02070at 298.224 kb on + strand, within HMPREF1058_RS02070at 298.436 kb on - strand, within HMPREF1058_RS02070at 298.675 kb on + strand, within HMPREF1058_RS02070at 298.676 kb on - strand, within HMPREF1058_RS02070at 298.676 kb on - strand, within HMPREF1058_RS02070at 298.680 kb on + strand, within HMPREF1058_RS02070at 298.759 kb on - strand, within HMPREF1058_RS02070at 298.812 kb on + strand, within HMPREF1058_RS02070at 298.825 kb on - strand, within HMPREF1058_RS02070at 298.839 kb on + strand, within HMPREF1058_RS02070at 298.840 kb on - strand, within HMPREF1058_RS02070at 298.840 kb on - strand, within HMPREF1058_RS02070at 298.851 kb on - strand, within HMPREF1058_RS02070at 298.881 kb on + strand, within HMPREF1058_RS02070at 298.906 kb on - strand, within HMPREF1058_RS02070at 298.961 kb on - strand, within HMPREF1058_RS02070at 299.017 kb on - strand, within HMPREF1058_RS02070at 299.017 kb on - strand, within HMPREF1058_RS02070at 299.018 kb on + strand, within HMPREF1058_RS02070at 299.019 kb on - strand, within HMPREF1058_RS02070at 299.019 kb on - strand, within HMPREF1058_RS02070at 299.025 kb on - strand, within HMPREF1058_RS02070at 299.076 kb on + strand, within HMPREF1058_RS02070at 299.122 kb on + strand, within HMPREF1058_RS02070at 299.137 kb on - strand, within HMPREF1058_RS02070at 299.166 kb on + strand, within HMPREF1058_RS02070at 299.215 kb on + strand, within HMPREF1058_RS02070at 299.216 kb on - strand, within HMPREF1058_RS02070at 299.220 kb on + strand, within HMPREF1058_RS02070at 299.220 kb on + strand, within HMPREF1058_RS02070at 299.220 kb on + strand, within HMPREF1058_RS02070at 299.221 kb on - strand, within HMPREF1058_RS02070at 299.221 kb on - strand, within HMPREF1058_RS02070at 299.225 kb on + strand, within HMPREF1058_RS02070at 299.412 kb on + strandat 299.518 kb on + strandat 299.532 kb on + strandat 299.571 kb on - strandat 299.572 kb on + strandat 299.573 kb on - strandat 299.619 kb on + strandat 299.683 kb on - strand, within HMPREF1058_RS02065at 299.683 kb on - strand, within HMPREF1058_RS02065at 300.006 kb on + strandat 300.007 kb on - strandat 300.016 kb on + strandat 300.017 kb on - strandat 300.017 kb on - strandat 300.059 kb on + strandat 300.062 kb on - strandat 300.077 kb on + strandat 300.077 kb on + strandat 300.078 kb on - strandat 300.079 kb on + strandat 300.081 kb on + strandat 300.111 kb on + strandat 300.114 kb on + strandat 300.222 kb on + strand, within HMPREF1058_RS02060at 300.223 kb on - strand, within HMPREF1058_RS02060at 300.278 kb on - strand, within HMPREF1058_RS02060at 300.283 kb on + strand, within HMPREF1058_RS02060at 300.284 kb on - strand, within HMPREF1058_RS02060at 300.399 kb on - strand, within HMPREF1058_RS02060at 300.399 kb on - strand, within HMPREF1058_RS02060

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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295,436 + HMPREF1058_RS02075 0.14 -1.4
295,446 - HMPREF1058_RS02075 0.15 -1.8
295,453 + HMPREF1058_RS02075 0.16 -2.4
295,455 + HMPREF1058_RS02075 0.16 -2.8
295,521 + HMPREF1058_RS02075 0.22 -2.2
295,547 + HMPREF1058_RS02075 0.25 -1.8
295,639 - HMPREF1058_RS02075 0.34 -2.5
295,710 - HMPREF1058_RS02075 0.41 -1.6
295,723 + HMPREF1058_RS02075 0.42 -2.7
295,724 - HMPREF1058_RS02075 0.42 -3.1
295,743 + HMPREF1058_RS02075 0.44 -2.2
295,806 - HMPREF1058_RS02075 0.50 -1.6
295,886 - HMPREF1058_RS02075 0.58 -1.8
295,908 + HMPREF1058_RS02075 0.60 -1.7
295,936 + HMPREF1058_RS02075 0.63 -1.5
295,936 + HMPREF1058_RS02075 0.63 -3.1
296,001 + HMPREF1058_RS02075 0.69 -2.6
296,018 + HMPREF1058_RS02075 0.71 -0.2
296,153 + HMPREF1058_RS02075 0.84 -0.1
296,154 - HMPREF1058_RS02075 0.84 -2.8
296,221 + -2.2
296,332 + -0.5
296,333 - +0.1
296,346 + -1.3
296,354 + +0.5
296,354 + -0.6
296,355 - -4.3
296,355 - -2.4
296,355 - -0.6
296,356 + -0.0
296,441 + -2.7
296,517 + -0.0
296,536 - -1.4
296,631 + -2.6
296,632 - -2.3
296,632 - -0.1
296,635 - -2.2
296,635 - -1.1
296,656 - -2.0
296,690 - -0.6
296,781 + HMPREF1058_RS02070 0.12 -3.6
296,852 - HMPREF1058_RS02070 0.14 -2.0
296,858 + HMPREF1058_RS02070 0.15 -4.9
296,869 - HMPREF1058_RS02070 0.15 -1.8
296,874 - HMPREF1058_RS02070 0.15 -2.2
296,946 + HMPREF1058_RS02070 0.17 -1.6
296,951 - HMPREF1058_RS02070 0.18 -3.2
296,951 - HMPREF1058_RS02070 0.18 -2.0
296,977 + HMPREF1058_RS02070 0.18 -3.0
297,024 + HMPREF1058_RS02070 0.20 -2.2
297,030 + HMPREF1058_RS02070 0.20 -2.3
297,031 - HMPREF1058_RS02070 0.20 -2.2
297,063 + HMPREF1058_RS02070 0.21 -0.1
297,063 + HMPREF1058_RS02070 0.21 -3.8
297,063 + HMPREF1058_RS02070 0.21 -2.6
297,063 + HMPREF1058_RS02070 0.21 -2.9
297,064 - HMPREF1058_RS02070 0.21 -2.8
297,064 - HMPREF1058_RS02070 0.21 -3.0
297,068 - HMPREF1058_RS02070 0.21 -2.0
297,122 + HMPREF1058_RS02070 0.23 -1.7
297,122 + HMPREF1058_RS02070 0.23 -1.7
297,151 + HMPREF1058_RS02070 0.24 -1.9
297,209 - HMPREF1058_RS02070 0.26 -2.2
297,211 - HMPREF1058_RS02070 0.26 -2.1
297,242 + HMPREF1058_RS02070 0.27 -3.9
297,242 + HMPREF1058_RS02070 0.27 -3.9
297,288 - HMPREF1058_RS02070 0.28 -1.0
297,303 + HMPREF1058_RS02070 0.29 -2.0
297,304 - HMPREF1058_RS02070 0.29 -0.7
297,366 + HMPREF1058_RS02070 0.31 -0.4
297,400 - HMPREF1058_RS02070 0.32 -1.9
297,403 - HMPREF1058_RS02070 0.32 -2.2
297,407 - HMPREF1058_RS02070 0.32 -2.3
297,471 + HMPREF1058_RS02070 0.34 -1.7
297,471 + HMPREF1058_RS02070 0.34 -2.8
297,477 + HMPREF1058_RS02070 0.34 -2.5
297,801 + HMPREF1058_RS02070 0.44 -0.9
297,813 + HMPREF1058_RS02070 0.45 -3.1
297,883 - HMPREF1058_RS02070 0.47 +0.1
298,185 + HMPREF1058_RS02070 0.56 -3.0
298,196 - HMPREF1058_RS02070 0.57 -1.4
298,196 - HMPREF1058_RS02070 0.57 -1.3
298,224 + HMPREF1058_RS02070 0.58 -2.2
298,436 - HMPREF1058_RS02070 0.64 -0.1
298,675 + HMPREF1058_RS02070 0.72 -0.7
298,676 - HMPREF1058_RS02070 0.72 -1.2
298,676 - HMPREF1058_RS02070 0.72 -3.6
298,680 + HMPREF1058_RS02070 0.72 +0.9
298,759 - HMPREF1058_RS02070 0.75 +2.4
298,812 + HMPREF1058_RS02070 0.76 -3.3
298,825 - HMPREF1058_RS02070 0.77 -2.0
298,839 + HMPREF1058_RS02070 0.77 -1.4
298,840 - HMPREF1058_RS02070 0.77 -3.5
298,840 - HMPREF1058_RS02070 0.77 -2.3
298,851 - HMPREF1058_RS02070 0.77 -2.3
298,881 + HMPREF1058_RS02070 0.78 -2.5
298,906 - HMPREF1058_RS02070 0.79 -0.3
298,961 - HMPREF1058_RS02070 0.81 -1.5
299,017 - HMPREF1058_RS02070 0.83 -1.9
299,017 - HMPREF1058_RS02070 0.83 -3.1
299,018 + HMPREF1058_RS02070 0.83 -1.6
299,019 - HMPREF1058_RS02070 0.83 -2.1
299,019 - HMPREF1058_RS02070 0.83 -2.6
299,025 - HMPREF1058_RS02070 0.83 -1.1
299,076 + HMPREF1058_RS02070 0.85 -2.8
299,122 + HMPREF1058_RS02070 0.86 -2.4
299,137 - HMPREF1058_RS02070 0.86 -1.1
299,166 + HMPREF1058_RS02070 0.87 -3.6
299,215 + HMPREF1058_RS02070 0.89 -1.0
299,216 - HMPREF1058_RS02070 0.89 -1.2
299,220 + HMPREF1058_RS02070 0.89 -0.7
299,220 + HMPREF1058_RS02070 0.89 -2.5
299,220 + HMPREF1058_RS02070 0.89 -2.7
299,221 - HMPREF1058_RS02070 0.89 -1.8
299,221 - HMPREF1058_RS02070 0.89 -3.3
299,225 + HMPREF1058_RS02070 0.89 -1.3
299,412 + -1.5
299,518 + -1.2
299,532 + -0.7
299,571 - +0.1
299,572 + +0.2
299,573 - +0.3
299,619 + -0.4
299,683 - HMPREF1058_RS02065 0.15 -2.0
299,683 - HMPREF1058_RS02065 0.15 -1.8
300,006 + +0.9
300,007 - -2.3
300,016 + +0.7
300,017 - -1.7
300,017 - -0.2
300,059 + -0.1
300,062 - +0.5
300,077 + -0.2
300,077 + -1.4
300,078 - +0.1
300,079 + -0.6
300,081 + -0.4
300,111 + -1.3
300,114 + -0.7
300,222 + HMPREF1058_RS02060 0.11 -0.3
300,223 - HMPREF1058_RS02060 0.11 -1.5
300,278 - HMPREF1058_RS02060 0.15 -0.3
300,283 + HMPREF1058_RS02060 0.16 -0.5
300,284 - HMPREF1058_RS02060 0.16 +1.3
300,399 - HMPREF1058_RS02060 0.24 +0.7
300,399 - HMPREF1058_RS02060 0.24 +0.3

Or see this region's nucleotide sequence