Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00540

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00545 and HMPREF1058_RS00540 are separated by 7 nucleotidesHMPREF1058_RS00540 and HMPREF1058_RS00535 are separated by 18 nucleotidesHMPREF1058_RS00535 and HMPREF1058_RS00530 are separated by 11 nucleotides HMPREF1058_RS00545: HMPREF1058_RS00545 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 56,534 to 57,682 _RS00545 HMPREF1058_RS00540: HMPREF1058_RS00540 - M23 family metallopeptidase, at 57,690 to 58,547 _RS00540 HMPREF1058_RS00535: HMPREF1058_RS00535 - 16S rRNA processing protein RimM, at 58,566 to 59,084 _RS00535 HMPREF1058_RS00530: HMPREF1058_RS00530 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 59,096 to 60,400 _RS00530 Position (kb) 57 58 59Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 57.857 kb on - strand, within HMPREF1058_RS00540at 57.917 kb on - strand, within HMPREF1058_RS00540at 57.917 kb on - strand, within HMPREF1058_RS00540at 58.038 kb on - strand, within HMPREF1058_RS00540at 58.071 kb on - strand, within HMPREF1058_RS00540at 58.115 kb on - strand, within HMPREF1058_RS00540at 58.115 kb on - strand, within HMPREF1058_RS00540at 58.224 kb on - strand, within HMPREF1058_RS00540at 58.248 kb on - strand, within HMPREF1058_RS00540at 58.250 kb on - strand, within HMPREF1058_RS00540at 58.250 kb on - strand, within HMPREF1058_RS00540at 58.250 kb on - strand, within HMPREF1058_RS00540at 58.250 kb on - strand, within HMPREF1058_RS00540at 58.335 kb on - strand, within HMPREF1058_RS00540at 58.335 kb on - strand, within HMPREF1058_RS00540at 58.335 kb on - strand, within HMPREF1058_RS00540at 58.473 kb on - strandat 58.564 kb on - strandat 58.564 kb on - strandat 59.108 kb on - strandat 59.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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57,857 - HMPREF1058_RS00540 0.19 -2.8
57,917 - HMPREF1058_RS00540 0.26 -2.6
57,917 - HMPREF1058_RS00540 0.26 -2.0
58,038 - HMPREF1058_RS00540 0.41 -1.7
58,071 - HMPREF1058_RS00540 0.44 -2.7
58,115 - HMPREF1058_RS00540 0.50 -1.2
58,115 - HMPREF1058_RS00540 0.50 -0.7
58,224 - HMPREF1058_RS00540 0.62 -1.4
58,248 - HMPREF1058_RS00540 0.65 -1.4
58,250 - HMPREF1058_RS00540 0.65 -3.9
58,250 - HMPREF1058_RS00540 0.65 -1.6
58,250 - HMPREF1058_RS00540 0.65 -1.0
58,250 - HMPREF1058_RS00540 0.65 -3.3
58,335 - HMPREF1058_RS00540 0.75 -2.8
58,335 - HMPREF1058_RS00540 0.75 -1.9
58,335 - HMPREF1058_RS00540 0.75 +0.5
58,473 - -1.7
58,564 - -2.6
58,564 - +0.1
59,108 - -2.2
59,108 - -0.6

Or see this region's nucleotide sequence