Experiment: Pseudomonas_EB271-B4-1_fractionated_cell_wall (C); Aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03485 and RR42_RS03490 are separated by 2 nucleotides RR42_RS03490 and RR42_RS03495 are separated by 2 nucleotides
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
RR42_RS03490: RR42_RS03490 - type VI secretion protein, at 774,584 to 775,624
_RS03490
RR42_RS03495: RR42_RS03495 - type VI secretion protein, at 775,627 to 777,507
_RS03495
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1
2 at 773.646 kb on + strand at 773.646 kb on + strand at 773.945 kb on - strand, within RR42_RS03485 at 774.418 kb on + strand, within RR42_RS03485 at 774.419 kb on - strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.475 kb on + strand, within RR42_RS03485 at 774.476 kb on - strand, within RR42_RS03485 at 774.755 kb on + strand, within RR42_RS03490 at 774.755 kb on + strand, within RR42_RS03490 at 774.756 kb on - strand, within RR42_RS03490 at 774.819 kb on + strand, within RR42_RS03490 at 774.820 kb on - strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.978 kb on + strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 774.979 kb on - strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.146 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.215 kb on + strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.216 kb on - strand, within RR42_RS03490 at 775.560 kb on + strand at 775.628 kb on + strand at 775.629 kb on - strand at 775.803 kb on + strand at 775.804 kb on - strand at 775.829 kb on + strand, within RR42_RS03495 at 775.830 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.001 kb on - strand, within RR42_RS03495 at 776.196 kb on - strand, within RR42_RS03495 at 776.196 kb on - strand, within RR42_RS03495 at 776.264 kb on + strand, within RR42_RS03495 at 776.264 kb on + strand, within RR42_RS03495 at 776.265 kb on - strand, within RR42_RS03495 at 776.265 kb on - strand, within RR42_RS03495 at 776.282 kb on + strand, within RR42_RS03495 at 776.282 kb on + strand, within RR42_RS03495 at 776.438 kb on + strand, within RR42_RS03495 at 776.438 kb on + strand, within RR42_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction Pseudomonas_EB271-B4-1_fractionated_cell_wall (C); Aerobic remove 773,646 + +0.3 773,646 + +0.1 773,945 - RR42_RS03485 0.39 -1.5 774,418 + RR42_RS03485 0.84 -0.0 774,419 - RR42_RS03485 0.84 -0.8 774,475 + RR42_RS03485 0.90 +0.5 774,475 + RR42_RS03485 0.90 -0.8 774,476 - RR42_RS03485 0.90 -0.1 774,755 + RR42_RS03490 0.16 -0.7 774,755 + RR42_RS03490 0.16 -0.8 774,756 - RR42_RS03490 0.17 +0.2 774,819 + RR42_RS03490 0.23 -0.7 774,820 - RR42_RS03490 0.23 +0.3 774,978 + RR42_RS03490 0.38 -0.0 774,978 + RR42_RS03490 0.38 -0.2 774,978 + RR42_RS03490 0.38 +0.1 774,979 - RR42_RS03490 0.38 +2.0 774,979 - RR42_RS03490 0.38 +0.0 774,979 - RR42_RS03490 0.38 -1.3 774,979 - RR42_RS03490 0.38 -0.4 775,146 + RR42_RS03490 0.54 -0.6 775,146 + RR42_RS03490 0.54 -0.2 775,215 + RR42_RS03490 0.61 -0.0 775,215 + RR42_RS03490 0.61 +0.2 775,216 - RR42_RS03490 0.61 -1.4 775,216 - RR42_RS03490 0.61 +0.7 775,560 + -0.2 775,628 + +0.6 775,629 - -0.6 775,803 + -0.6 775,804 - +0.2 775,829 + RR42_RS03495 0.11 +0.1 775,830 - RR42_RS03495 0.11 -1.0 776,001 - RR42_RS03495 0.20 +0.5 776,001 - RR42_RS03495 0.20 +0.8 776,001 - RR42_RS03495 0.20 -0.9 776,001 - RR42_RS03495 0.20 +0.6 776,196 - RR42_RS03495 0.30 +0.5 776,196 - RR42_RS03495 0.30 +0.2 776,264 + RR42_RS03495 0.34 -0.1 776,264 + RR42_RS03495 0.34 +0.1 776,265 - RR42_RS03495 0.34 -0.3 776,265 - RR42_RS03495 0.34 -0.2 776,282 + RR42_RS03495 0.35 -0.5 776,282 + RR42_RS03495 0.35 +0.9 776,438 + RR42_RS03495 0.43 +0.1 776,438 + RR42_RS03495 0.43 -1.1
Or see this region's nucleotide sequence