Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13645

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS13640 and LRK54_RS13645 are separated by 146 nucleotidesLRK54_RS13645 and LRK54_RS13650 are separated by 138 nucleotidesLRK54_RS13650 and LRK54_RS13655 are separated by 18 nucleotides LRK54_RS13640: LRK54_RS13640 - chemotaxis protein CheA, at 3,048,239 to 3,050,230 _RS13640 LRK54_RS13645: LRK54_RS13645 - methyl-accepting chemotaxis protein, at 3,050,377 to 3,052,080 _RS13645 LRK54_RS13650: LRK54_RS13650 - chemotaxis protein CheW, at 3,052,219 to 3,052,725 _RS13650 LRK54_RS13655: LRK54_RS13655 - methyl-accepting chemotaxis protein, at 3,052,744 to 3,054,465 _RS13655 Position (kb) 3050 3051 3052 3053Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3049.496 kb on + strand, within LRK54_RS13640at 3049.496 kb on + strand, within LRK54_RS13640at 3049.496 kb on + strand, within LRK54_RS13640at 3049.496 kb on + strand, within LRK54_RS13640at 3049.496 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.847 kb on + strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.848 kb on - strand, within LRK54_RS13640at 3049.949 kb on + strand, within LRK54_RS13640at 3049.949 kb on + strand, within LRK54_RS13640at 3049.949 kb on + strand, within LRK54_RS13640at 3049.949 kb on + strand, within LRK54_RS13640at 3049.950 kb on - strand, within LRK54_RS13640at 3049.950 kb on - strand, within LRK54_RS13640at 3050.117 kb on + strandat 3050.117 kb on + strandat 3050.117 kb on + strandat 3050.117 kb on + strandat 3050.117 kb on + strandat 3050.118 kb on - strandat 3050.118 kb on - strandat 3050.390 kb on + strandat 3050.391 kb on - strandat 3050.671 kb on + strand, within LRK54_RS13645at 3050.671 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.695 kb on + strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.696 kb on - strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.827 kb on + strand, within LRK54_RS13645at 3050.828 kb on - strand, within LRK54_RS13645at 3050.830 kb on + strand, within LRK54_RS13645at 3050.830 kb on + strand, within LRK54_RS13645at 3050.830 kb on + strand, within LRK54_RS13645at 3050.830 kb on + strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.831 kb on - strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.850 kb on + strand, within LRK54_RS13645at 3050.851 kb on - strand, within LRK54_RS13645at 3050.851 kb on - strand, within LRK54_RS13645at 3050.851 kb on - strand, within LRK54_RS13645at 3050.851 kb on - strand, within LRK54_RS13645at 3050.851 kb on - strand, within LRK54_RS13645at 3050.878 kb on + strand, within LRK54_RS13645at 3050.878 kb on + strand, within LRK54_RS13645at 3050.878 kb on + strand, within LRK54_RS13645at 3050.878 kb on + strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.879 kb on - strand, within LRK54_RS13645at 3050.926 kb on + strand, within LRK54_RS13645at 3051.014 kb on + strand, within LRK54_RS13645at 3051.014 kb on + strand, within LRK54_RS13645at 3051.015 kb on - strand, within LRK54_RS13645at 3051.015 kb on - strand, within LRK54_RS13645at 3051.015 kb on - strand, within LRK54_RS13645at 3051.015 kb on - strand, within LRK54_RS13645at 3052.167 kb on + strandat 3052.167 kb on + strandat 3052.167 kb on + strandat 3052.168 kb on - strandat 3052.168 kb on - strandat 3052.199 kb on + strandat 3052.199 kb on + strandat 3052.199 kb on + strandat 3052.209 kb on + strandat 3052.209 kb on + strandat 3052.209 kb on + strandat 3052.210 kb on - strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.222 kb on + strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.223 kb on - strandat 3052.288 kb on + strand, within LRK54_RS13650at 3052.288 kb on + strand, within LRK54_RS13650at 3052.288 kb on + strand, within LRK54_RS13650at 3052.288 kb on + strand, within LRK54_RS13650at 3052.289 kb on - strand, within LRK54_RS13650at 3052.289 kb on - strand, within LRK54_RS13650at 3052.363 kb on + strand, within LRK54_RS13650at 3052.363 kb on + strand, within LRK54_RS13650at 3052.363 kb on + strand, within LRK54_RS13650at 3052.363 kb on + strand, within LRK54_RS13650at 3052.364 kb on - strand, within LRK54_RS13650at 3052.364 kb on - strand, within LRK54_RS13650at 3052.364 kb on - strand, within LRK54_RS13650at 3052.364 kb on - strand, within LRK54_RS13650at 3052.364 kb on - strand, within LRK54_RS13650at 3052.447 kb on + strand, within LRK54_RS13650at 3052.447 kb on + strand, within LRK54_RS13650at 3052.448 kb on - strand, within LRK54_RS13650at 3052.448 kb on - strand, within LRK54_RS13650at 3052.591 kb on + strand, within LRK54_RS13650at 3052.906 kb on + strandat 3052.906 kb on + strandat 3052.906 kb on + strandat 3052.906 kb on + strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3052.907 kb on - strandat 3053.069 kb on + strand, within LRK54_RS13655at 3053.069 kb on + strand, within LRK54_RS13655at 3053.069 kb on + strand, within LRK54_RS13655at 3053.069 kb on + strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655at 3053.070 kb on - strand, within LRK54_RS13655

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,049,496 + LRK54_RS13640 0.63 -1.4
3,049,496 + LRK54_RS13640 0.63 +1.5
3,049,496 + LRK54_RS13640 0.63 +0.5
3,049,496 + LRK54_RS13640 0.63 -0.3
3,049,496 + LRK54_RS13640 0.63 +0.2
3,049,847 + LRK54_RS13640 0.81 +0.8
3,049,847 + LRK54_RS13640 0.81 -0.3
3,049,847 + LRK54_RS13640 0.81 -1.3
3,049,847 + LRK54_RS13640 0.81 -0.7
3,049,847 + LRK54_RS13640 0.81 -1.0
3,049,847 + LRK54_RS13640 0.81 -0.2
3,049,847 + LRK54_RS13640 0.81 +0.1
3,049,847 + LRK54_RS13640 0.81 -1.0
3,049,847 + LRK54_RS13640 0.81 +0.3
3,049,847 + LRK54_RS13640 0.81 -1.2
3,049,847 + LRK54_RS13640 0.81 -0.9
3,049,848 - LRK54_RS13640 0.81 +0.1
3,049,848 - LRK54_RS13640 0.81 +0.8
3,049,848 - LRK54_RS13640 0.81 -1.6
3,049,848 - LRK54_RS13640 0.81 -0.2
3,049,848 - LRK54_RS13640 0.81 -0.4
3,049,848 - LRK54_RS13640 0.81 -3.2
3,049,848 - LRK54_RS13640 0.81 +0.4
3,049,848 - LRK54_RS13640 0.81 +1.1
3,049,848 - LRK54_RS13640 0.81 +0.2
3,049,848 - LRK54_RS13640 0.81 +0.2
3,049,848 - LRK54_RS13640 0.81 +1.0
3,049,949 + LRK54_RS13640 0.86 +0.3
3,049,949 + LRK54_RS13640 0.86 +0.9
3,049,949 + LRK54_RS13640 0.86 +1.6
3,049,949 + LRK54_RS13640 0.86 -1.1
3,049,950 - LRK54_RS13640 0.86 -0.4
3,049,950 - LRK54_RS13640 0.86 -0.4
3,050,117 + -0.2
3,050,117 + +1.0
3,050,117 + -0.7
3,050,117 + -0.1
3,050,117 + -0.7
3,050,118 - -0.1
3,050,118 - +0.3
3,050,390 + +0.4
3,050,391 - -0.6
3,050,671 + LRK54_RS13645 0.17 +0.0
3,050,671 + LRK54_RS13645 0.17 -1.2
3,050,695 + LRK54_RS13645 0.19 -1.4
3,050,695 + LRK54_RS13645 0.19 -2.3
3,050,695 + LRK54_RS13645 0.19 +0.3
3,050,695 + LRK54_RS13645 0.19 +0.6
3,050,695 + LRK54_RS13645 0.19 +0.9
3,050,695 + LRK54_RS13645 0.19 -0.0
3,050,695 + LRK54_RS13645 0.19 +0.0
3,050,695 + LRK54_RS13645 0.19 -1.8
3,050,695 + LRK54_RS13645 0.19 -0.2
3,050,695 + LRK54_RS13645 0.19 -0.4
3,050,695 + LRK54_RS13645 0.19 -0.0
3,050,695 + LRK54_RS13645 0.19 -0.4
3,050,695 + LRK54_RS13645 0.19 +0.3
3,050,695 + LRK54_RS13645 0.19 -0.3
3,050,695 + LRK54_RS13645 0.19 -0.4
3,050,695 + LRK54_RS13645 0.19 +1.8
3,050,695 + LRK54_RS13645 0.19 +0.2
3,050,695 + LRK54_RS13645 0.19 +0.8
3,050,695 + LRK54_RS13645 0.19 -1.2
3,050,695 + LRK54_RS13645 0.19 +1.6
3,050,695 + LRK54_RS13645 0.19 +0.3
3,050,695 + LRK54_RS13645 0.19 -0.6
3,050,696 - LRK54_RS13645 0.19 -1.2
3,050,696 - LRK54_RS13645 0.19 -1.1
3,050,696 - LRK54_RS13645 0.19 +0.8
3,050,696 - LRK54_RS13645 0.19 -1.2
3,050,696 - LRK54_RS13645 0.19 +1.2
3,050,696 - LRK54_RS13645 0.19 +2.2
3,050,696 - LRK54_RS13645 0.19 +1.8
3,050,696 - LRK54_RS13645 0.19 +1.9
3,050,696 - LRK54_RS13645 0.19 +0.8
3,050,696 - LRK54_RS13645 0.19 -2.1
3,050,696 - LRK54_RS13645 0.19 +0.1
3,050,696 - LRK54_RS13645 0.19 -0.2
3,050,696 - LRK54_RS13645 0.19 +0.2
3,050,696 - LRK54_RS13645 0.19 +0.1
3,050,696 - LRK54_RS13645 0.19 -0.0
3,050,696 - LRK54_RS13645 0.19 -0.7
3,050,696 - LRK54_RS13645 0.19 +0.5
3,050,696 - LRK54_RS13645 0.19 +0.2
3,050,696 - LRK54_RS13645 0.19 -1.0
3,050,827 + LRK54_RS13645 0.26 -0.8
3,050,827 + LRK54_RS13645 0.26 -0.0
3,050,827 + LRK54_RS13645 0.26 +0.4
3,050,827 + LRK54_RS13645 0.26 -2.0
3,050,827 + LRK54_RS13645 0.26 +0.8
3,050,827 + LRK54_RS13645 0.26 -1.0
3,050,827 + LRK54_RS13645 0.26 +2.8
3,050,828 - LRK54_RS13645 0.26 -1.3
3,050,830 + LRK54_RS13645 0.27 -0.4
3,050,830 + LRK54_RS13645 0.27 +1.8
3,050,830 + LRK54_RS13645 0.27 -0.4
3,050,830 + LRK54_RS13645 0.27 +1.8
3,050,831 - LRK54_RS13645 0.27 -0.6
3,050,831 - LRK54_RS13645 0.27 +1.8
3,050,831 - LRK54_RS13645 0.27 -1.4
3,050,831 - LRK54_RS13645 0.27 +0.4
3,050,831 - LRK54_RS13645 0.27 +0.9
3,050,831 - LRK54_RS13645 0.27 -0.3
3,050,831 - LRK54_RS13645 0.27 +1.5
3,050,831 - LRK54_RS13645 0.27 +1.0
3,050,831 - LRK54_RS13645 0.27 -0.1
3,050,831 - LRK54_RS13645 0.27 -0.3
3,050,831 - LRK54_RS13645 0.27 -0.9
3,050,850 + LRK54_RS13645 0.28 +1.1
3,050,850 + LRK54_RS13645 0.28 -2.1
3,050,850 + LRK54_RS13645 0.28 +0.4
3,050,850 + LRK54_RS13645 0.28 -0.5
3,050,850 + LRK54_RS13645 0.28 -0.4
3,050,850 + LRK54_RS13645 0.28 -0.8
3,050,850 + LRK54_RS13645 0.28 +0.4
3,050,850 + LRK54_RS13645 0.28 -0.1
3,050,850 + LRK54_RS13645 0.28 +0.3
3,050,850 + LRK54_RS13645 0.28 +1.2
3,050,851 - LRK54_RS13645 0.28 -1.8
3,050,851 - LRK54_RS13645 0.28 +0.5
3,050,851 - LRK54_RS13645 0.28 +1.8
3,050,851 - LRK54_RS13645 0.28 -0.6
3,050,851 - LRK54_RS13645 0.28 +0.9
3,050,878 + LRK54_RS13645 0.29 -0.2
3,050,878 + LRK54_RS13645 0.29 +0.9
3,050,878 + LRK54_RS13645 0.29 -0.6
3,050,878 + LRK54_RS13645 0.29 +0.4
3,050,879 - LRK54_RS13645 0.29 +0.2
3,050,879 - LRK54_RS13645 0.29 -1.2
3,050,879 - LRK54_RS13645 0.29 -0.2
3,050,879 - LRK54_RS13645 0.29 +0.2
3,050,879 - LRK54_RS13645 0.29 +0.8
3,050,879 - LRK54_RS13645 0.29 -1.2
3,050,879 - LRK54_RS13645 0.29 -1.1
3,050,879 - LRK54_RS13645 0.29 -0.2
3,050,879 - LRK54_RS13645 0.29 -0.1
3,050,926 + LRK54_RS13645 0.32 -0.1
3,051,014 + LRK54_RS13645 0.37 -0.2
3,051,014 + LRK54_RS13645 0.37 +0.4
3,051,015 - LRK54_RS13645 0.37 -0.1
3,051,015 - LRK54_RS13645 0.37 -1.7
3,051,015 - LRK54_RS13645 0.37 +1.1
3,051,015 - LRK54_RS13645 0.37 +0.5
3,052,167 + -1.1
3,052,167 + -2.5
3,052,167 + -0.4
3,052,168 - -1.0
3,052,168 - -0.4
3,052,199 + -1.4
3,052,199 + +0.1
3,052,199 + -0.8
3,052,209 + -0.4
3,052,209 + -0.6
3,052,209 + -1.1
3,052,210 - -0.3
3,052,222 + +0.9
3,052,222 + -0.1
3,052,222 + +0.8
3,052,222 + -2.5
3,052,222 + -0.4
3,052,222 + -1.2
3,052,222 + -0.6
3,052,222 + +0.3
3,052,222 + +1.1
3,052,223 - -0.3
3,052,223 - -2.0
3,052,223 - -0.8
3,052,223 - -0.4
3,052,223 - -0.2
3,052,223 - -0.1
3,052,223 - +1.4
3,052,223 - +1.2
3,052,223 - -0.6
3,052,288 + LRK54_RS13650 0.14 +1.0
3,052,288 + LRK54_RS13650 0.14 -0.2
3,052,288 + LRK54_RS13650 0.14 +0.4
3,052,288 + LRK54_RS13650 0.14 -0.6
3,052,289 - LRK54_RS13650 0.14 +1.3
3,052,289 - LRK54_RS13650 0.14 -0.1
3,052,363 + LRK54_RS13650 0.28 -1.5
3,052,363 + LRK54_RS13650 0.28 -2.1
3,052,363 + LRK54_RS13650 0.28 -1.0
3,052,363 + LRK54_RS13650 0.28 -1.7
3,052,364 - LRK54_RS13650 0.29 +1.2
3,052,364 - LRK54_RS13650 0.29 -0.9
3,052,364 - LRK54_RS13650 0.29 +0.4
3,052,364 - LRK54_RS13650 0.29 -0.5
3,052,364 - LRK54_RS13650 0.29 +0.7
3,052,447 + LRK54_RS13650 0.45 -0.9
3,052,447 + LRK54_RS13650 0.45 +0.6
3,052,448 - LRK54_RS13650 0.45 +1.4
3,052,448 - LRK54_RS13650 0.45 +0.5
3,052,591 + LRK54_RS13650 0.73 +0.0
3,052,906 + +2.1
3,052,906 + +0.0
3,052,906 + -0.1
3,052,906 + -0.1
3,052,907 - -0.8
3,052,907 - -0.9
3,052,907 - -1.4
3,052,907 - +0.9
3,052,907 - -1.8
3,052,907 - -0.2
3,052,907 - -0.4
3,053,069 + LRK54_RS13655 0.19 +0.8
3,053,069 + LRK54_RS13655 0.19 -0.7
3,053,069 + LRK54_RS13655 0.19 -0.1
3,053,069 + LRK54_RS13655 0.19 -0.6
3,053,070 - LRK54_RS13655 0.19 -0.8
3,053,070 - LRK54_RS13655 0.19 +0.6
3,053,070 - LRK54_RS13655 0.19 -1.8
3,053,070 - LRK54_RS13655 0.19 -0.8
3,053,070 - LRK54_RS13655 0.19 -0.1
3,053,070 - LRK54_RS13655 0.19 +0.9
3,053,070 - LRK54_RS13655 0.19 +1.5

Or see this region's nucleotide sequence