Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18090

Experiment: R2A_PIPES with Aluminum chloride 1.125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 1.125 mM
3,948,142	+		LRK54_RS18085	0.27	-0.7
3,948,143	-		LRK54_RS18085	0.27	-0.5
3,948,143	-		LRK54_RS18085	0.27	-0.8
3,948,143	-		LRK54_RS18085	0.27	-2.1
3,948,154	+		LRK54_RS18085	0.28	-1.2
3,948,154	+		LRK54_RS18085	0.28	-0.5
3,948,154	+		LRK54_RS18085	0.28	-1.5
3,948,154	+		LRK54_RS18085	0.28	+0.0
3,948,154	+		LRK54_RS18085	0.28	-0.9
3,948,154	+		LRK54_RS18085	0.28	-0.3
3,948,154	+		LRK54_RS18085	0.28	+1.6
3,948,154	+		LRK54_RS18085	0.28	-1.7
3,948,154	+		LRK54_RS18085	0.28	-1.8
3,948,154	+		LRK54_RS18085	0.28	+0.9
3,948,154	+		LRK54_RS18085	0.28	-1.3
3,948,154	+		LRK54_RS18085	0.28	+0.8
3,948,154	+		LRK54_RS18085	0.28	+1.7
3,948,154	+		LRK54_RS18085	0.28	+0.8
3,948,154	+		LRK54_RS18085	0.28	+0.4
3,948,154	+		LRK54_RS18085	0.28	+0.2
3,948,154	+		LRK54_RS18085	0.28	+0.8
3,948,154	+		LRK54_RS18085	0.28	+0.1
3,948,154	+		LRK54_RS18085	0.28	-0.1
3,948,154	+		LRK54_RS18085	0.28	+1.1
3,948,154	+		LRK54_RS18085	0.28	-1.7
3,948,154	+		LRK54_RS18085	0.28	+1.3
3,948,154	+		LRK54_RS18085	0.28	+0.5
3,948,154	+		LRK54_RS18085	0.28	+0.3
3,948,154	+		LRK54_RS18085	0.28	+1.2
3,948,154	+		LRK54_RS18085	0.28	+0.2
3,948,154	+		LRK54_RS18085	0.28	+0.2
3,948,154	+		LRK54_RS18085	0.28	-0.2
3,948,154	+		LRK54_RS18085	0.28	+1.1
3,948,155	-		LRK54_RS18085	0.28	+0.4
3,948,155	-		LRK54_RS18085	0.28	-0.1
3,948,155	-		LRK54_RS18085	0.28	-2.1
3,948,155	-		LRK54_RS18085	0.28	+0.3
3,948,155	-		LRK54_RS18085	0.28	-1.6
3,948,155	-		LRK54_RS18085	0.28	-0.1
3,948,155	-		LRK54_RS18085	0.28	-1.2
3,948,155	-		LRK54_RS18085	0.28	+1.7
3,948,155	-		LRK54_RS18085	0.28	+0.0
3,948,155	-		LRK54_RS18085	0.28	-0.4
3,948,155	-		LRK54_RS18085	0.28	-0.1
3,948,155	-		LRK54_RS18085	0.28	+0.3
3,948,155	-		LRK54_RS18085	0.28	+0.7
3,948,155	-		LRK54_RS18085	0.28	+0.8
3,948,155	-		LRK54_RS18085	0.28	+0.8
3,948,155	-		LRK54_RS18085	0.28	-1.2
3,948,155	-		LRK54_RS18085	0.28	-1.3
3,948,155	-		LRK54_RS18085	0.28	-0.4
3,948,155	-		LRK54_RS18085	0.28	+1.7
3,948,155	-		LRK54_RS18085	0.28	-0.1
3,948,155	-		LRK54_RS18085	0.28	-1.5
3,948,155	-		LRK54_RS18085	0.28	+0.8
3,948,155	-		LRK54_RS18085	0.28	+0.1
3,948,155	-		LRK54_RS18085	0.28	+0.1
3,948,155	-		LRK54_RS18085	0.28	+1.5
3,948,155	-		LRK54_RS18085	0.28	+0.5
3,948,155	-		LRK54_RS18085	0.28	+2.8
3,948,155	-		LRK54_RS18085	0.28	+0.3
3,948,155	-		LRK54_RS18085	0.28	+2.5
3,948,155	-		LRK54_RS18085	0.28	+0.3
3,948,155	-		LRK54_RS18085	0.28	-1.0
3,948,236	+		LRK54_RS18085	0.37	+0.5
3,948,236	+		LRK54_RS18085	0.37	+0.5
3,948,236	+		LRK54_RS18085	0.37	-0.6
3,948,236	+		LRK54_RS18085	0.37	-0.3
3,948,236	+		LRK54_RS18085	0.37	+0.3
3,948,236	+		LRK54_RS18085	0.37	+0.3
3,948,236	+		LRK54_RS18085	0.37	-0.6
3,948,237	-		LRK54_RS18085	0.37	+0.8
3,948,237	-		LRK54_RS18085	0.37	-0.5
3,948,237	-		LRK54_RS18085	0.37	-0.8
3,948,237	-		LRK54_RS18085	0.37	-1.3
3,948,237	-		LRK54_RS18085	0.37	+1.0
3,948,237	-		LRK54_RS18085	0.37	-1.7
3,948,237	-		LRK54_RS18085	0.37	-2.1
3,948,237	-		LRK54_RS18085	0.37	+3.1
3,948,237	-		LRK54_RS18085	0.37	-1.3
3,948,237	-		LRK54_RS18085	0.37	-0.3
3,948,237	-		LRK54_RS18085	0.37	+0.5
3,948,237	-		LRK54_RS18085	0.37	+2.1
3,948,277	+		LRK54_RS18085	0.42	-1.6
3,948,278	-		LRK54_RS18085	0.42	-0.2
3,948,278	-		LRK54_RS18085	0.42	-0.4
3,948,278	-		LRK54_RS18085	0.42	+0.8
3,948,278	-		LRK54_RS18085	0.42	+2.3
3,948,328	+		LRK54_RS18085	0.47	-1.4
3,948,328	+		LRK54_RS18085	0.47	-0.8
3,948,328	+		LRK54_RS18085	0.47	+3.1
3,948,329	-		LRK54_RS18085	0.47	+0.0
3,948,329	-		LRK54_RS18085	0.47	-0.1
3,948,329	-		LRK54_RS18085	0.47	+1.3
3,948,329	-		LRK54_RS18085	0.47	-0.8
3,948,329	-		LRK54_RS18085	0.47	+0.1
3,948,329	-		LRK54_RS18085	0.47	-0.6
3,948,329	-		LRK54_RS18085	0.47	-0.5
3,948,329	-		LRK54_RS18085	0.47	-1.1
3,948,329	-		LRK54_RS18085	0.47	+1.7
3,948,457	+		LRK54_RS18085	0.61	+0.8
3,948,457	+		LRK54_RS18085	0.61	-0.3
3,948,457	+		LRK54_RS18085	0.61	+2.1
3,948,457	+		LRK54_RS18085	0.61	-0.7
3,948,457	+		LRK54_RS18085	0.61	+0.9
3,948,458	-		LRK54_RS18085	0.61	-0.3
3,948,458	-		LRK54_RS18085	0.61	-0.1
3,948,458	-		LRK54_RS18085	0.61	+0.5
3,948,458	-		LRK54_RS18085	0.61	+0.1
3,948,484	+		LRK54_RS18085	0.64	-0.6
3,948,484	+		LRK54_RS18085	0.64	-0.6
3,948,484	+		LRK54_RS18085	0.64	-2.3
3,948,484	+		LRK54_RS18085	0.64	+0.8
3,948,484	+		LRK54_RS18085	0.64	-1.2
3,948,484	+		LRK54_RS18085	0.64	+0.2
3,948,484	+		LRK54_RS18085	0.64	-2.0
3,948,484	+		LRK54_RS18085	0.64	-0.3
3,948,485	-		LRK54_RS18085	0.64	-0.7
3,948,485	-		LRK54_RS18085	0.64	-1.3
3,948,485	-		LRK54_RS18085	0.64	+0.2
3,948,485	-		LRK54_RS18085	0.64	-1.3
3,948,485	-		LRK54_RS18085	0.64	-0.2
3,948,486	+		LRK54_RS18085	0.64	-0.3
3,948,486	+		LRK54_RS18085	0.64	-0.8
3,948,486	+		LRK54_RS18085	0.64	-0.2
3,948,487	-		LRK54_RS18085	0.64	-1.6
3,948,487	-		LRK54_RS18085	0.64	-1.6
3,948,487	-		LRK54_RS18085	0.64	-0.7
3,948,487	-		LRK54_RS18085	0.64	+0.4
3,948,487	-		LRK54_RS18085	0.64	-3.1
3,948,627	+		LRK54_RS18085	0.80	-0.3
3,948,627	+		LRK54_RS18085	0.80	-1.2
3,948,627	+		LRK54_RS18085	0.80	+1.1
3,948,627	+		LRK54_RS18085	0.80	-0.9
3,948,627	+		LRK54_RS18085	0.80	-0.7
3,948,627	+		LRK54_RS18085	0.80	+1.6
3,948,627	+		LRK54_RS18085	0.80	-0.8
3,948,628	-		LRK54_RS18085	0.80	-1.0
3,948,628	-		LRK54_RS18085	0.80	-2.1
3,948,628	-		LRK54_RS18085	0.80	-2.3
3,948,628	-		LRK54_RS18085	0.80	+0.7
3,948,748	+				+1.3
3,948,748	+				+3.1
3,948,748	+				-3.5
3,948,748	+				-0.3
3,948,749	-				+0.3
3,948,850	-				+0.4
3,948,850	-				-0.2
3,948,850	-				-0.8
3,949,021	+				-2.1
3,949,021	+				+0.2
3,949,021	+				-0.1
3,949,021	+				-0.5
3,949,021	+				-0.3
3,949,021	+				-0.8
3,949,022	-				+0.3
3,949,022	-				+0.6
3,949,022	-				-1.1
3,949,022	-				-0.3
3,949,022	-				+0.2
3,949,022	-				-1.9
3,949,022	-				+0.2
3,949,022	-				+0.4
3,949,621	+		LRK54_RS18095	0.60	-2.1
3,949,621	+		LRK54_RS18095	0.60	-0.6
3,949,621	+		LRK54_RS18095	0.60	+0.5
3,949,621	+		LRK54_RS18095	0.60	-0.9
3,949,621	+		LRK54_RS18095	0.60	-2.2
3,949,621	+		LRK54_RS18095	0.60	+0.2
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	-0.6
3,949,621	+		LRK54_RS18095	0.60	+0.5
3,949,621	+		LRK54_RS18095	0.60	+1.5
3,949,621	+		LRK54_RS18095	0.60	-0.1
3,949,621	+		LRK54_RS18095	0.60	+0.5
3,949,621	+		LRK54_RS18095	0.60	-0.7
3,949,621	+		LRK54_RS18095	0.60	-1.2
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	+0.2
3,949,621	+		LRK54_RS18095	0.60	+0.8
3,949,621	+		LRK54_RS18095	0.60	+1.1
3,949,621	+		LRK54_RS18095	0.60	+0.2
3,949,621	+		LRK54_RS18095	0.60	-0.5
3,949,621	+		LRK54_RS18095	0.60	+1.8
3,949,621	+		LRK54_RS18095	0.60	-0.4
3,949,621	+		LRK54_RS18095	0.60	-0.1
3,949,621	+		LRK54_RS18095	0.60	+1.9
3,949,621	+		LRK54_RS18095	0.60	+3.1
3,949,621	+		LRK54_RS18095	0.60	-0.7
3,949,622	-		LRK54_RS18095	0.60	+0.5
3,949,622	-		LRK54_RS18095	0.60	-0.4
3,949,622	-		LRK54_RS18095	0.60	-0.2
3,949,622	-		LRK54_RS18095	0.60	-0.1
3,949,622	-		LRK54_RS18095	0.60	+3.3
3,949,622	-		LRK54_RS18095	0.60	+1.1
3,949,622	-		LRK54_RS18095	0.60	+1.1
3,949,622	-		LRK54_RS18095	0.60	+2.1
3,949,622	-		LRK54_RS18095	0.60	-1.4
3,949,622	-		LRK54_RS18095	0.60	+0.1
3,949,622	-		LRK54_RS18095	0.60	-0.7
3,949,622	-		LRK54_RS18095	0.60	-0.2
3,949,622	-		LRK54_RS18095	0.60	-0.6
3,949,622	-		LRK54_RS18095	0.60	-0.7
3,949,622	-		LRK54_RS18095	0.60	-1.6
3,949,622	-		LRK54_RS18095	0.60	+0.3
3,949,622	-		LRK54_RS18095	0.60	+0.8
3,949,750	+				-1.0
3,949,750	+				+2.1
3,949,750	+				-1.5
3,949,750	+				-0.8
3,949,750	+				+0.5
3,949,750	+				-0.7
3,949,750	+				-2.1
3,949,750	+				+3.1
3,949,750	+				+0.8
3,949,750	+				+2.1
3,949,750	+				-1.1
3,949,750	+				+0.0
3,949,750	+				-0.5
3,949,751	-				+1.2
3,949,751	-				-1.1
3,949,751	-				+0.3
3,949,751	-				+1.5
3,949,751	-				+1.5
3,949,751	-				-0.7
3,949,751	-				+1.3
3,949,751	-				+0.6
3,949,751	-				-1.5
3,949,751	-				+0.5
3,949,789	+				+0.2
3,949,789	+				+1.2
3,949,789	+				-0.3
3,949,789	+				+1.2
3,949,789	+				+0.1
3,949,789	+				-1.4
3,949,789	+				+0.6
3,949,790	-				-0.2
3,949,790	-				-0.3
3,949,790	-				-0.2
3,949,790	-				+0.8
3,949,790	-				-2.0
3,949,790	-				+0.8
3,949,790	-				-0.0
3,949,790	-				-2.6
3,949,827	+				+0.5
3,949,827	+				-0.3
3,949,827	+				+0.5
3,949,827	+				-0.1
3,949,827	+				+1.7
3,949,827	+				+1.1
3,949,827	+				+0.8
3,949,827	+				+2.4
3,949,827	+				+0.8
3,949,827	+				+1.5
3,949,827	+				-1.3
3,949,827	+				+2.1
3,949,827	+				+1.1
3,949,828	-				+1.8
3,949,828	-				-2.5
3,949,828	-				+0.4
3,949,828	-				-1.4
3,949,828	-				+0.9
3,949,828	-				+1.1
3,949,828	-				+1.1
3,949,828	-				-0.6
3,949,828	-				-0.4
3,949,828	-				+1.1
3,949,828	-				-0.2
3,949,828	-				+0.8
3,949,828	-				+0.6
3,949,828	-				-0.1
3,949,828	-				-1.1
3,949,828	-				+2.1
3,949,843	+		LRK54_RS18100	0.11	+2.3
3,949,843	+		LRK54_RS18100	0.11	-1.1
3,949,843	+		LRK54_RS18100	0.11	-0.8
3,949,844	-		LRK54_RS18100	0.12	-0.4
3,949,844	-		LRK54_RS18100	0.12	-0.3
3,949,844	-		LRK54_RS18100	0.12	-1.4
3,949,844	-		LRK54_RS18100	0.12	-0.4
3,949,844	-		LRK54_RS18100	0.12	-1.4
3,949,844	-		LRK54_RS18100	0.12	-0.6
3,949,844	-		LRK54_RS18100	0.12	+1.7
3,949,844	-		LRK54_RS18100	0.12	-0.9
3,949,844	-		LRK54_RS18100	0.12	+1.7
3,949,844	-		LRK54_RS18100	0.12	+0.0
3,949,980	+		LRK54_RS18100	0.33	-1.1
3,949,980	+		LRK54_RS18100	0.33	+0.5
3,949,980	+		LRK54_RS18100	0.33	+1.3
3,949,980	+		LRK54_RS18100	0.33	-0.4
3,949,980	+		LRK54_RS18100	0.33	+0.8
3,949,980	+		LRK54_RS18100	0.33	+0.3
3,949,980	+		LRK54_RS18100	0.33	-0.2
3,949,980	+		LRK54_RS18100	0.33	-0.3
3,949,980	+		LRK54_RS18100	0.33	-0.3
3,949,980	+		LRK54_RS18100	0.33	-0.1
3,949,980	+		LRK54_RS18100	0.33	+0.2
3,949,980	+		LRK54_RS18100	0.33	+0.1
3,949,980	+		LRK54_RS18100	0.33	-0.5
3,949,980	+		LRK54_RS18100	0.33	-0.6
3,949,980	+		LRK54_RS18100	0.33	-0.9
3,949,981	-		LRK54_RS18100	0.33	-1.3
3,949,981	-		LRK54_RS18100	0.33	-0.5
3,949,981	-		LRK54_RS18100	0.33	-0.6
3,949,981	-		LRK54_RS18100	0.33	-0.3
3,949,981	-		LRK54_RS18100	0.33	-2.8
3,949,981	-		LRK54_RS18100	0.33	-1.8
3,949,981	-		LRK54_RS18100	0.33	-0.1
3,949,981	-		LRK54_RS18100	0.33	-0.5
3,949,981	-		LRK54_RS18100	0.33	-0.3
3,949,981	-		LRK54_RS18100	0.33	-1.0
3,949,981	-		LRK54_RS18100	0.33	-0.4
3,949,981	-		LRK54_RS18100	0.33	-0.1
3,949,981	-		LRK54_RS18100	0.33	+0.2
3,949,981	-		LRK54_RS18100	0.33	-1.4
3,949,981	-		LRK54_RS18100	0.33	+2.1
3,950,274	+		LRK54_RS18100	0.78	+0.7
3,950,274	+		LRK54_RS18100	0.78	+0.1
3,950,275	-		LRK54_RS18100	0.78	-0.7
3,950,275	-		LRK54_RS18100	0.78	+0.3
3,950,275	-		LRK54_RS18100	0.78	-1.1
3,950,275	-		LRK54_RS18100	0.78	-1.1
3,950,275	-		LRK54_RS18100	0.78	+1.2
3,950,301	+		LRK54_RS18100	0.82	+0.8
3,950,301	+		LRK54_RS18100	0.82	-0.1
3,950,301	+		LRK54_RS18100	0.82	-1.0
3,950,302	-		LRK54_RS18100	0.82	+0.9
3,950,302	-		LRK54_RS18100	0.82	+1.5