Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18740 and HMPREF1058_RS21570 are separated by 180 nucleotides HMPREF1058_RS21570 and HMPREF1058_RS18735 are separated by 76 nucleotides
HMPREF1058_RS18740: HMPREF1058_RS18740 - AAA family ATPase, at 86,954 to 89,011
_RS18740
HMPREF1058_RS21570: HMPREF1058_RS21570 - hypothetical protein, at 89,192 to 89,314
_RS21570
HMPREF1058_RS18735: HMPREF1058_RS18735 - hypothetical protein, at 89,391 to 90,269
_RS18735
Position (kb) 89
90 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 88.211 kb on + strand, within HMPREF1058_RS18740 at 88.212 kb on - strand, within HMPREF1058_RS18740 at 88.212 kb on - strand, within HMPREF1058_RS18740 at 88.212 kb on - strand, within HMPREF1058_RS18740 at 88.291 kb on - strand, within HMPREF1058_RS18740 at 88.305 kb on - strand, within HMPREF1058_RS18740 at 88.328 kb on - strand, within HMPREF1058_RS18740 at 88.330 kb on + strand, within HMPREF1058_RS18740 at 88.330 kb on + strand, within HMPREF1058_RS18740 at 88.330 kb on + strand, within HMPREF1058_RS18740 at 88.340 kb on + strand, within HMPREF1058_RS18740 at 88.414 kb on - strand, within HMPREF1058_RS18740 at 88.434 kb on + strand, within HMPREF1058_RS18740 at 88.604 kb on - strand, within HMPREF1058_RS18740 at 88.605 kb on + strand, within HMPREF1058_RS18740 at 88.605 kb on + strand, within HMPREF1058_RS18740 at 88.605 kb on + strand, within HMPREF1058_RS18740 at 88.711 kb on - strand, within HMPREF1058_RS18740 at 88.723 kb on - strand, within HMPREF1058_RS18740 at 88.812 kb on + strand at 88.841 kb on - strand at 88.937 kb on + strand at 88.942 kb on - strand at 88.990 kb on + strand at 88.991 kb on - strand at 88.991 kb on - strand at 89.009 kb on + strand at 89.144 kb on + strand at 89.148 kb on + strand at 89.149 kb on - strand at 89.149 kb on - strand at 89.292 kb on + strand, within HMPREF1058_RS21570 at 89.335 kb on - strand at 89.367 kb on + strand at 89.368 kb on - strand at 89.368 kb on - strand at 89.462 kb on + strand at 89.489 kb on + strand, within HMPREF1058_RS18735 at 89.489 kb on + strand, within HMPREF1058_RS18735 at 89.490 kb on - strand, within HMPREF1058_RS18735 at 89.500 kb on + strand, within HMPREF1058_RS18735 at 89.639 kb on + strand at 89.640 kb on - strand, within HMPREF1058_RS18735 at 89.645 kb on - strand, within HMPREF1058_RS18735 at 89.645 kb on - strand, within HMPREF1058_RS18735 at 89.645 kb on - strand, within HMPREF1058_RS18735 at 89.645 kb on - strand, within HMPREF1058_RS18735 at 89.692 kb on + strand, within HMPREF1058_RS18735 at 89.692 kb on + strand, within HMPREF1058_RS18735 at 89.692 kb on + strand, within HMPREF1058_RS18735 at 89.790 kb on - strand, within HMPREF1058_RS18735 at 89.790 kb on - strand, within HMPREF1058_RS18735 at 89.794 kb on + strand, within HMPREF1058_RS18735 at 89.795 kb on - strand, within HMPREF1058_RS18735 at 89.821 kb on + strand, within HMPREF1058_RS18735 at 89.826 kb on - strand, within HMPREF1058_RS18735 at 89.826 kb on - strand, within HMPREF1058_RS18735 at 89.893 kb on + strand, within HMPREF1058_RS18735 at 89.894 kb on - strand, within HMPREF1058_RS18735 at 89.915 kb on - strand, within HMPREF1058_RS18735 at 89.915 kb on - strand, within HMPREF1058_RS18735 at 90.133 kb on + strand, within HMPREF1058_RS18735 at 90.134 kb on - strand, within HMPREF1058_RS18735 at 90.134 kb on - strand, within HMPREF1058_RS18735 at 90.186 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 88,211 + HMPREF1058_RS18740 0.61 +0.8 88,212 - HMPREF1058_RS18740 0.61 +0.3 88,212 - HMPREF1058_RS18740 0.61 +0.1 88,212 - HMPREF1058_RS18740 0.61 +1.1 88,291 - HMPREF1058_RS18740 0.65 -1.0 88,305 - HMPREF1058_RS18740 0.66 -0.6 88,328 - HMPREF1058_RS18740 0.67 -0.7 88,330 + HMPREF1058_RS18740 0.67 +1.4 88,330 + HMPREF1058_RS18740 0.67 +1.5 88,330 + HMPREF1058_RS18740 0.67 -1.2 88,340 + HMPREF1058_RS18740 0.67 -0.3 88,414 - HMPREF1058_RS18740 0.71 -0.2 88,434 + HMPREF1058_RS18740 0.72 -0.2 88,604 - HMPREF1058_RS18740 0.80 +0.0 88,605 + HMPREF1058_RS18740 0.80 -0.1 88,605 + HMPREF1058_RS18740 0.80 +0.1 88,605 + HMPREF1058_RS18740 0.80 -2.6 88,711 - HMPREF1058_RS18740 0.85 +0.6 88,723 - HMPREF1058_RS18740 0.86 +0.5 88,812 + -0.9 88,841 - +0.5 88,937 + +0.3 88,942 - -2.1 88,990 + -0.3 88,991 - -0.1 88,991 - +1.6 89,009 + +0.1 89,144 + -0.2 89,148 + +1.0 89,149 - -1.8 89,149 - -0.1 89,292 + HMPREF1058_RS21570 0.81 -1.5 89,335 - +0.3 89,367 + +0.7 89,368 - -1.5 89,368 - -0.3 89,462 + +0.5 89,489 + HMPREF1058_RS18735 0.11 -1.5 89,489 + HMPREF1058_RS18735 0.11 -2.1 89,490 - HMPREF1058_RS18735 0.11 -0.2 89,500 + HMPREF1058_RS18735 0.12 +0.4 89,639 + +1.2 89,640 - HMPREF1058_RS18735 0.28 -1.6 89,645 - HMPREF1058_RS18735 0.29 -0.1 89,645 - HMPREF1058_RS18735 0.29 +0.8 89,645 - HMPREF1058_RS18735 0.29 -1.6 89,645 - HMPREF1058_RS18735 0.29 -0.1 89,692 + HMPREF1058_RS18735 0.34 +0.9 89,692 + HMPREF1058_RS18735 0.34 -0.1 89,692 + HMPREF1058_RS18735 0.34 +0.8 89,790 - HMPREF1058_RS18735 0.45 -0.9 89,790 - HMPREF1058_RS18735 0.45 +3.2 89,794 + HMPREF1058_RS18735 0.46 -0.8 89,795 - HMPREF1058_RS18735 0.46 -0.1 89,821 + HMPREF1058_RS18735 0.49 -1.3 89,826 - HMPREF1058_RS18735 0.49 +0.7 89,826 - HMPREF1058_RS18735 0.49 +1.0 89,893 + HMPREF1058_RS18735 0.57 +0.2 89,894 - HMPREF1058_RS18735 0.57 +0.8 89,915 - HMPREF1058_RS18735 0.60 +1.1 89,915 - HMPREF1058_RS18735 0.60 -0.6 90,133 + HMPREF1058_RS18735 0.84 +0.5 90,134 - HMPREF1058_RS18735 0.85 -0.6 90,134 - HMPREF1058_RS18735 0.85 -0.2 90,186 + +0.9
Or see this region's nucleotide sequence