Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01100 and HMPREF1058_RS21550 are separated by 198 nucleotides HMPREF1058_RS21550 and HMPREF1058_RS01095 are separated by 1 nucleotides HMPREF1058_RS01095 and HMPREF1058_RS01090 are separated by 1 nucleotides
HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764
_RS01100
HMPREF1058_RS21550: HMPREF1058_RS21550 - hypothetical protein, at 210,963 to 211,034
_RS21550
HMPREF1058_RS01095: HMPREF1058_RS01095 - hypothetical protein, at 211,036 to 211,266
_RS01095
HMPREF1058_RS01090: HMPREF1058_RS01090 - DUF4852 domain-containing protein, at 211,268 to 212,422
_RS01090
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 210.010 kb on - strand, within HMPREF1058_RS01100 at 210.011 kb on + strand, within HMPREF1058_RS01100 at 210.012 kb on - strand, within HMPREF1058_RS01100 at 210.012 kb on - strand, within HMPREF1058_RS01100 at 210.065 kb on + strand, within HMPREF1058_RS01100 at 210.074 kb on - strand, within HMPREF1058_RS01100 at 210.074 kb on - strand, within HMPREF1058_RS01100 at 210.082 kb on + strand, within HMPREF1058_RS01100 at 210.083 kb on - strand, within HMPREF1058_RS01100 at 210.084 kb on + strand, within HMPREF1058_RS01100 at 210.085 kb on - strand, within HMPREF1058_RS01100 at 210.165 kb on + strand, within HMPREF1058_RS01100 at 210.165 kb on + strand, within HMPREF1058_RS01100 at 210.166 kb on - strand, within HMPREF1058_RS01100 at 210.167 kb on + strand, within HMPREF1058_RS01100 at 210.168 kb on - strand, within HMPREF1058_RS01100 at 210.204 kb on - strand, within HMPREF1058_RS01100 at 210.238 kb on + strand, within HMPREF1058_RS01100 at 210.310 kb on - strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.312 kb on - strand at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.319 kb on + strand, within HMPREF1058_RS01100 at 210.340 kb on - strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.423 kb on - strand, within HMPREF1058_RS01100 at 210.458 kb on + strand, within HMPREF1058_RS01100 at 210.498 kb on - strand, within HMPREF1058_RS01100 at 210.503 kb on - strand, within HMPREF1058_RS01100 at 210.640 kb on + strand, within HMPREF1058_RS01100 at 210.708 kb on + strand at 210.747 kb on - strand at 210.747 kb on - strand at 210.755 kb on + strand at 210.810 kb on - strand at 210.810 kb on - strand at 210.814 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.887 kb on + strand at 210.887 kb on + strand at 210.889 kb on + strand at 210.889 kb on + strand at 210.922 kb on + strand at 210.923 kb on - strand at 210.968 kb on - strand at 210.989 kb on - strand, within HMPREF1058_RS21550 at 211.015 kb on - strand, within HMPREF1058_RS21550 at 211.033 kb on - strand at 211.048 kb on - strand at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.081 kb on + strand at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.101 kb on - strand, within HMPREF1058_RS01095 at 211.119 kb on + strand, within HMPREF1058_RS01095 at 211.139 kb on + strand, within HMPREF1058_RS01095 at 211.148 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.206 kb on - strand, within HMPREF1058_RS01095 at 211.220 kb on + strand, within HMPREF1058_RS01095 at 211.267 kb on + strand at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.400 kb on - strand, within HMPREF1058_RS01090 at 211.565 kb on + strand, within HMPREF1058_RS01090 at 211.566 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.746 kb on - strand, within HMPREF1058_RS01090 at 211.797 kb on - strand, within HMPREF1058_RS01090 at 211.824 kb on - strand, within HMPREF1058_RS01090 at 211.825 kb on + strand, within HMPREF1058_RS01090 at 211.826 kb on - strand, within HMPREF1058_RS01090 at 211.918 kb on + strand, within HMPREF1058_RS01090 at 211.958 kb on + strand, within HMPREF1058_RS01090
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 210,010 - HMPREF1058_RS01100 0.13 +1.3 210,011 + HMPREF1058_RS01100 0.13 +1.2 210,012 - HMPREF1058_RS01100 0.13 +0.6 210,012 - HMPREF1058_RS01100 0.13 -1.2 210,065 + HMPREF1058_RS01100 0.19 +0.0 210,074 - HMPREF1058_RS01100 0.20 -0.0 210,074 - HMPREF1058_RS01100 0.20 +0.7 210,082 + HMPREF1058_RS01100 0.21 +0.3 210,083 - HMPREF1058_RS01100 0.21 +2.0 210,084 + HMPREF1058_RS01100 0.21 -2.2 210,085 - HMPREF1058_RS01100 0.21 -0.9 210,165 + HMPREF1058_RS01100 0.31 -0.5 210,165 + HMPREF1058_RS01100 0.31 -1.0 210,166 - HMPREF1058_RS01100 0.31 -0.3 210,167 + HMPREF1058_RS01100 0.31 -0.4 210,168 - HMPREF1058_RS01100 0.31 -0.5 210,204 - HMPREF1058_RS01100 0.35 +1.1 210,238 + HMPREF1058_RS01100 0.39 +2.7 210,310 - HMPREF1058_RS01100 0.47 -0.6 210,311 + HMPREF1058_RS01100 0.47 +0.0 210,311 + HMPREF1058_RS01100 0.47 -0.3 210,311 + HMPREF1058_RS01100 0.47 -1.1 210,311 + HMPREF1058_RS01100 0.47 -0.5 210,312 - -0.9 210,312 - HMPREF1058_RS01100 0.48 +1.5 210,312 - HMPREF1058_RS01100 0.48 +1.9 210,312 - HMPREF1058_RS01100 0.48 -0.1 210,312 - HMPREF1058_RS01100 0.48 +2.9 210,312 - HMPREF1058_RS01100 0.48 -0.7 210,319 + HMPREF1058_RS01100 0.48 -0.3 210,340 - HMPREF1058_RS01100 0.51 +0.6 210,343 + HMPREF1058_RS01100 0.51 +1.3 210,343 + HMPREF1058_RS01100 0.51 +0.3 210,343 + HMPREF1058_RS01100 0.51 +1.1 210,343 + HMPREF1058_RS01100 0.51 +0.7 210,422 + HMPREF1058_RS01100 0.60 +0.4 210,422 + HMPREF1058_RS01100 0.60 -0.1 210,423 - HMPREF1058_RS01100 0.60 -1.1 210,458 + HMPREF1058_RS01100 0.64 -1.1 210,498 - HMPREF1058_RS01100 0.69 -0.7 210,503 - HMPREF1058_RS01100 0.70 -1.4 210,640 + HMPREF1058_RS01100 0.86 +0.6 210,708 + +1.3 210,747 - -0.3 210,747 - +0.0 210,755 + -0.3 210,810 - +0.2 210,810 - +0.1 210,814 - -0.1 210,875 - -0.7 210,875 - -0.9 210,875 - +0.2 210,887 + +1.0 210,887 + +1.7 210,889 + -0.1 210,889 + -2.5 210,922 + +0.4 210,923 - -0.1 210,968 - +0.4 210,989 - HMPREF1058_RS21550 0.36 -0.9 211,015 - HMPREF1058_RS21550 0.72 -0.4 211,033 - +0.1 211,048 - +0.2 211,068 - HMPREF1058_RS01095 0.14 +0.1 211,068 - HMPREF1058_RS01095 0.14 -0.5 211,081 + +0.3 211,100 + HMPREF1058_RS01095 0.28 -0.3 211,100 + HMPREF1058_RS01095 0.28 -1.9 211,101 - HMPREF1058_RS01095 0.28 -0.6 211,119 + HMPREF1058_RS01095 0.36 +1.1 211,139 + HMPREF1058_RS01095 0.45 +0.8 211,148 + HMPREF1058_RS01095 0.48 -1.3 211,203 + HMPREF1058_RS01095 0.72 +0.6 211,203 + HMPREF1058_RS01095 0.72 +1.2 211,203 + HMPREF1058_RS01095 0.72 -1.4 211,206 - HMPREF1058_RS01095 0.74 +2.3 211,220 + HMPREF1058_RS01095 0.80 -1.8 211,267 + +0.3 211,399 + HMPREF1058_RS01090 0.11 -0.3 211,399 + HMPREF1058_RS01090 0.11 -0.1 211,399 + HMPREF1058_RS01090 0.11 -0.0 211,400 - HMPREF1058_RS01090 0.11 -0.9 211,565 + HMPREF1058_RS01090 0.26 -1.2 211,566 - HMPREF1058_RS01090 0.26 -0.2 211,651 - HMPREF1058_RS01090 0.33 -0.7 211,651 - HMPREF1058_RS01090 0.33 +0.5 211,746 - HMPREF1058_RS01090 0.41 +0.3 211,797 - HMPREF1058_RS01090 0.46 +0.5 211,824 - HMPREF1058_RS01090 0.48 +0.7 211,825 + HMPREF1058_RS01090 0.48 +0.7 211,826 - HMPREF1058_RS01090 0.48 +0.4 211,918 + HMPREF1058_RS01090 0.56 +2.7 211,958 + HMPREF1058_RS01090 0.60 -0.2
Or see this region's nucleotide sequence