Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11460 and HMPREF1058_RS20690 are separated by 218 nucleotides HMPREF1058_RS20690 and HMPREF1058_RS11455 are separated by 165 nucleotides HMPREF1058_RS11455 and HMPREF1058_RS11450 are separated by 134 nucleotides
HMPREF1058_RS11460: HMPREF1058_RS11460 - hypothetical protein, at 372,529 to 374,187
_RS11460
HMPREF1058_RS20690: HMPREF1058_RS20690 - AAA family ATPase, at 374,406 to 374,588
_RS20690
HMPREF1058_RS11455: HMPREF1058_RS11455 - PorT family protein, at 374,754 to 375,443
_RS11455
HMPREF1058_RS11450: HMPREF1058_RS11450 - hypothetical protein, at 375,578 to 377,245
_RS11450
Position (kb) 374
375 Strain fitness (log2 ratio) -2
-1
0
1 at 373.421 kb on - strand, within HMPREF1058_RS11460 at 373.440 kb on + strand, within HMPREF1058_RS11460 at 373.511 kb on - strand, within HMPREF1058_RS11460 at 373.542 kb on + strand, within HMPREF1058_RS11460 at 373.543 kb on - strand, within HMPREF1058_RS11460 at 373.558 kb on - strand, within HMPREF1058_RS11460 at 373.563 kb on - strand, within HMPREF1058_RS11460 at 373.588 kb on + strand, within HMPREF1058_RS11460 at 373.605 kb on + strand, within HMPREF1058_RS11460 at 373.614 kb on + strand, within HMPREF1058_RS11460 at 373.619 kb on + strand, within HMPREF1058_RS11460 at 373.619 kb on + strand, within HMPREF1058_RS11460 at 373.620 kb on - strand, within HMPREF1058_RS11460 at 373.624 kb on - strand, within HMPREF1058_RS11460 at 373.635 kb on + strand, within HMPREF1058_RS11460 at 373.648 kb on - strand, within HMPREF1058_RS11460 at 373.653 kb on + strand, within HMPREF1058_RS11460 at 373.673 kb on + strand, within HMPREF1058_RS11460 at 373.868 kb on + strand, within HMPREF1058_RS11460 at 373.868 kb on + strand at 373.868 kb on + strand, within HMPREF1058_RS11460 at 373.869 kb on - strand, within HMPREF1058_RS11460 at 373.869 kb on - strand, within HMPREF1058_RS11460 at 373.994 kb on + strand, within HMPREF1058_RS11460 at 373.998 kb on - strand, within HMPREF1058_RS11460 at 374.036 kb on - strand at 374.098 kb on + strand at 374.171 kb on - strand at 374.173 kb on - strand at 374.173 kb on - strand at 374.176 kb on - strand at 374.190 kb on + strand at 374.190 kb on + strand at 374.191 kb on - strand at 374.211 kb on + strand at 374.361 kb on - strand at 374.370 kb on - strand at 374.373 kb on + strand at 374.383 kb on + strand at 374.445 kb on + strand, within HMPREF1058_RS20690 at 374.463 kb on + strand, within HMPREF1058_RS20690 at 374.561 kb on + strand, within HMPREF1058_RS20690 at 374.592 kb on - strand at 374.679 kb on - strand at 374.722 kb on + strand at 374.723 kb on - strand at 374.803 kb on + strand at 374.804 kb on - strand at 374.834 kb on + strand, within HMPREF1058_RS11455 at 375.056 kb on + strand, within HMPREF1058_RS11455 at 375.063 kb on + strand, within HMPREF1058_RS11455 at 375.063 kb on + strand, within HMPREF1058_RS11455 at 375.064 kb on - strand, within HMPREF1058_RS11455 at 375.075 kb on + strand, within HMPREF1058_RS11455 at 375.116 kb on - strand, within HMPREF1058_RS11455 at 375.152 kb on - strand, within HMPREF1058_RS11455 at 375.161 kb on + strand, within HMPREF1058_RS11455 at 375.179 kb on - strand, within HMPREF1058_RS11455 at 375.288 kb on + strand, within HMPREF1058_RS11455 at 375.336 kb on - strand, within HMPREF1058_RS11455 at 375.337 kb on + strand, within HMPREF1058_RS11455 at 375.402 kb on + strand at 375.402 kb on + strand at 375.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 373,421 - HMPREF1058_RS11460 0.54 -0.4 373,440 + HMPREF1058_RS11460 0.55 -1.6 373,511 - HMPREF1058_RS11460 0.59 -0.1 373,542 + HMPREF1058_RS11460 0.61 +1.6 373,543 - HMPREF1058_RS11460 0.61 -1.2 373,558 - HMPREF1058_RS11460 0.62 -0.4 373,563 - HMPREF1058_RS11460 0.62 -0.8 373,588 + HMPREF1058_RS11460 0.64 -0.3 373,605 + HMPREF1058_RS11460 0.65 +1.0 373,614 + HMPREF1058_RS11460 0.65 -0.3 373,619 + HMPREF1058_RS11460 0.66 +1.1 373,619 + HMPREF1058_RS11460 0.66 -0.7 373,620 - HMPREF1058_RS11460 0.66 +0.1 373,624 - HMPREF1058_RS11460 0.66 -0.2 373,635 + HMPREF1058_RS11460 0.67 +0.8 373,648 - HMPREF1058_RS11460 0.67 -1.1 373,653 + HMPREF1058_RS11460 0.68 -1.8 373,673 + HMPREF1058_RS11460 0.69 -0.4 373,868 + HMPREF1058_RS11460 0.81 -0.1 373,868 + -0.2 373,868 + HMPREF1058_RS11460 0.81 -0.1 373,869 - HMPREF1058_RS11460 0.81 -0.4 373,869 - HMPREF1058_RS11460 0.81 +0.1 373,994 + HMPREF1058_RS11460 0.88 -0.3 373,998 - HMPREF1058_RS11460 0.89 +1.7 374,036 - -0.2 374,098 + +0.1 374,171 - -0.3 374,173 - -0.2 374,173 - +0.2 374,176 - +0.0 374,190 + -2.0 374,190 + -0.7 374,191 - -0.8 374,211 + -1.7 374,361 - -0.1 374,370 - -0.3 374,373 + -0.8 374,383 + -0.5 374,445 + HMPREF1058_RS20690 0.21 -0.7 374,463 + HMPREF1058_RS20690 0.31 -0.4 374,561 + HMPREF1058_RS20690 0.85 -1.0 374,592 - -0.0 374,679 - +0.2 374,722 + +0.2 374,723 - -1.0 374,803 + -0.0 374,804 - +0.3 374,834 + HMPREF1058_RS11455 0.12 -0.0 375,056 + HMPREF1058_RS11455 0.44 -0.6 375,063 + HMPREF1058_RS11455 0.45 -0.2 375,063 + HMPREF1058_RS11455 0.45 -0.3 375,064 - HMPREF1058_RS11455 0.45 -0.3 375,075 + HMPREF1058_RS11455 0.47 +0.1 375,116 - HMPREF1058_RS11455 0.52 +0.1 375,152 - HMPREF1058_RS11455 0.58 +0.7 375,161 + HMPREF1058_RS11455 0.59 -0.1 375,179 - HMPREF1058_RS11455 0.62 +0.4 375,288 + HMPREF1058_RS11455 0.77 -0.0 375,336 - HMPREF1058_RS11455 0.84 -0.3 375,337 + HMPREF1058_RS11455 0.84 -1.4 375,402 + -1.7 375,402 + +0.1 375,574 - -1.1
Or see this region's nucleotide sequence