Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17885 and HMPREF1058_RS17880 are separated by 21 nucleotides HMPREF1058_RS17880 and HMPREF1058_RS17875 are separated by 93 nucleotides HMPREF1058_RS17875 and HMPREF1058_RS17870 are separated by 208 nucleotides
HMPREF1058_RS17885: HMPREF1058_RS17885 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 308,058 to 310,271
_RS17885
HMPREF1058_RS17880: HMPREF1058_RS17880 - diacylglycerol kinase family protein, at 310,293 to 310,646
_RS17880
HMPREF1058_RS17875: HMPREF1058_RS17875 - DUF1573 domain-containing protein, at 310,740 to 311,153
_RS17875
HMPREF1058_RS17870: HMPREF1058_RS17870 - metallophosphoesterase, at 311,362 to 312,168
_RS17870
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1
2 at 309.297 kb on + strand, within HMPREF1058_RS17885 at 309.298 kb on - strand, within HMPREF1058_RS17885 at 309.535 kb on + strand, within HMPREF1058_RS17885 at 309.536 kb on - strand, within HMPREF1058_RS17885 at 309.646 kb on - strand, within HMPREF1058_RS17885 at 309.758 kb on + strand, within HMPREF1058_RS17885 at 309.885 kb on - strand, within HMPREF1058_RS17885 at 309.890 kb on + strand, within HMPREF1058_RS17885 at 309.891 kb on - strand, within HMPREF1058_RS17885 at 309.894 kb on + strand, within HMPREF1058_RS17885 at 309.895 kb on - strand, within HMPREF1058_RS17885 at 309.907 kb on + strand, within HMPREF1058_RS17885 at 309.908 kb on - strand, within HMPREF1058_RS17885 at 309.962 kb on + strand, within HMPREF1058_RS17885 at 310.078 kb on + strand at 310.078 kb on + strand at 310.094 kb on + strand at 310.094 kb on + strand at 310.192 kb on + strand at 310.199 kb on + strand at 310.223 kb on - strand at 310.286 kb on + strand at 310.286 kb on + strand at 310.325 kb on + strand at 310.329 kb on + strand, within HMPREF1058_RS17880 at 310.432 kb on + strand, within HMPREF1058_RS17880 at 310.478 kb on - strand, within HMPREF1058_RS17880 at 310.547 kb on + strand, within HMPREF1058_RS17880 at 310.709 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.738 kb on + strand at 310.765 kb on + strand at 310.766 kb on - strand at 310.777 kb on + strand at 310.851 kb on - strand, within HMPREF1058_RS17875 at 310.851 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.026 kb on - strand, within HMPREF1058_RS17875 at 311.028 kb on - strand, within HMPREF1058_RS17875 at 311.114 kb on - strand at 311.167 kb on + strand at 311.167 kb on + strand at 311.181 kb on + strand at 311.211 kb on - strand at 311.211 kb on - strand at 311.224 kb on - strand at 311.262 kb on + strand at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.448 kb on + strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.449 kb on - strand, within HMPREF1058_RS17870 at 311.558 kb on - strand, within HMPREF1058_RS17870 at 311.579 kb on + strand, within HMPREF1058_RS17870
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 309,297 + HMPREF1058_RS17885 0.56 -0.8 309,298 - HMPREF1058_RS17885 0.56 -0.4 309,535 + HMPREF1058_RS17885 0.67 +0.2 309,536 - HMPREF1058_RS17885 0.67 -0.2 309,646 - HMPREF1058_RS17885 0.72 -0.8 309,758 + HMPREF1058_RS17885 0.77 +0.1 309,885 - HMPREF1058_RS17885 0.83 -0.4 309,890 + HMPREF1058_RS17885 0.83 -0.1 309,891 - HMPREF1058_RS17885 0.83 +1.3 309,894 + HMPREF1058_RS17885 0.83 -1.0 309,895 - HMPREF1058_RS17885 0.83 +0.9 309,907 + HMPREF1058_RS17885 0.84 +0.4 309,908 - HMPREF1058_RS17885 0.84 +1.9 309,962 + HMPREF1058_RS17885 0.86 -0.3 310,078 + -0.7 310,078 + -1.1 310,094 + -0.9 310,094 + +0.2 310,192 + -0.2 310,199 + -0.8 310,223 - -0.3 310,286 + +0.1 310,286 + +0.1 310,325 + +0.2 310,329 + HMPREF1058_RS17880 0.10 -1.2 310,432 + HMPREF1058_RS17880 0.39 -0.1 310,478 - HMPREF1058_RS17880 0.52 +0.1 310,547 + HMPREF1058_RS17880 0.72 -1.5 310,709 + +1.9 310,738 + +0.5 310,738 + -1.0 310,738 + -1.1 310,765 + -1.6 310,766 - +0.7 310,777 + +0.4 310,851 - HMPREF1058_RS17875 0.27 -0.9 310,851 - HMPREF1058_RS17875 0.27 -1.4 311,026 - HMPREF1058_RS17875 0.69 -1.2 311,026 - HMPREF1058_RS17875 0.69 -0.7 311,028 - HMPREF1058_RS17875 0.70 -0.3 311,114 - -0.2 311,167 + +0.4 311,167 + -1.1 311,181 + -0.1 311,211 - +0.8 311,211 - -0.4 311,224 - +0.3 311,262 + +0.9 311,448 + HMPREF1058_RS17870 0.11 -1.2 311,448 + HMPREF1058_RS17870 0.11 +0.8 311,449 - HMPREF1058_RS17870 0.11 -0.4 311,449 - HMPREF1058_RS17870 0.11 -0.4 311,449 - HMPREF1058_RS17870 0.11 -0.1 311,449 - HMPREF1058_RS17870 0.11 +0.9 311,449 - HMPREF1058_RS17870 0.11 +0.4 311,558 - HMPREF1058_RS17870 0.24 -1.7 311,579 + HMPREF1058_RS17870 0.27 +0.2
Or see this region's nucleotide sequence