Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17765 and HMPREF1058_RS17760 are separated by 321 nucleotides HMPREF1058_RS17760 and HMPREF1058_RS17755 are separated by 92 nucleotides
HMPREF1058_RS17765: HMPREF1058_RS17765 - Do family serine endopeptidase, at 339,693 to 341,216
_RS17765
HMPREF1058_RS17760: HMPREF1058_RS17760 - YkgB family protein, at 341,538 to 342,128
_RS17760
HMPREF1058_RS17755: HMPREF1058_RS17755 - helix-turn-helix domain-containing protein, at 342,221 to 343,057
_RS17755
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.982 kb on + strand, within HMPREF1058_RS17765 at 340.983 kb on - strand, within HMPREF1058_RS17765 at 340.989 kb on + strand, within HMPREF1058_RS17765 at 341.097 kb on - strand at 341.132 kb on + strand at 341.155 kb on - strand at 341.201 kb on + strand at 341.222 kb on - strand at 341.277 kb on - strand at 341.286 kb on + strand at 341.440 kb on + strand at 341.444 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.449 kb on - strand at 341.449 kb on - strand at 341.493 kb on + strand at 341.494 kb on - strand at 341.494 kb on - strand at 341.505 kb on - strand at 341.738 kb on + strand, within HMPREF1058_RS17760 at 341.846 kb on + strand, within HMPREF1058_RS17760 at 341.847 kb on - strand, within HMPREF1058_RS17760 at 341.993 kb on - strand, within HMPREF1058_RS17760 at 342.091 kb on - strand at 342.142 kb on - strand at 342.210 kb on + strand at 342.210 kb on + strand at 342.211 kb on - strand at 342.352 kb on - strand, within HMPREF1058_RS17755 at 342.443 kb on - strand, within HMPREF1058_RS17755 at 342.466 kb on + strand, within HMPREF1058_RS17755 at 342.522 kb on + strand, within HMPREF1058_RS17755 at 342.625 kb on + strand, within HMPREF1058_RS17755 at 342.688 kb on + strand, within HMPREF1058_RS17755 at 342.801 kb on + strand, within HMPREF1058_RS17755 at 342.963 kb on + strand, within HMPREF1058_RS17755 at 343.019 kb on + strand at 343.021 kb on + strand at 343.039 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.044 kb on - strand at 343.119 kb on + strand at 343.120 kb on - strand at 343.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 340,811 + HMPREF1058_RS17765 0.73 -0.7 340,811 + HMPREF1058_RS17765 0.73 -1.5 340,813 + HMPREF1058_RS17765 0.73 +2.3 340,813 + HMPREF1058_RS17765 0.73 -0.9 340,982 + HMPREF1058_RS17765 0.85 -0.5 340,983 - HMPREF1058_RS17765 0.85 +0.4 340,989 + HMPREF1058_RS17765 0.85 -0.9 341,097 - -0.0 341,132 + -2.0 341,155 - +1.0 341,201 + -0.7 341,222 - -0.3 341,277 - -0.2 341,286 + +1.5 341,440 + -0.1 341,444 + +0.4 341,448 + +0.3 341,448 + +0.7 341,448 + -0.2 341,449 - -0.1 341,449 - +0.6 341,493 + -0.6 341,494 - -0.2 341,494 - -0.9 341,505 - +0.4 341,738 + HMPREF1058_RS17760 0.34 -0.6 341,846 + HMPREF1058_RS17760 0.52 -0.5 341,847 - HMPREF1058_RS17760 0.52 -0.9 341,993 - HMPREF1058_RS17760 0.77 -1.1 342,091 - -0.2 342,142 - +0.1 342,210 + -0.6 342,210 + -0.5 342,211 - +1.8 342,352 - HMPREF1058_RS17755 0.16 +0.2 342,443 - HMPREF1058_RS17755 0.27 +0.1 342,466 + HMPREF1058_RS17755 0.29 -1.0 342,522 + HMPREF1058_RS17755 0.36 -0.5 342,625 + HMPREF1058_RS17755 0.48 +0.9 342,688 + HMPREF1058_RS17755 0.56 +0.7 342,801 + HMPREF1058_RS17755 0.69 +0.8 342,963 + HMPREF1058_RS17755 0.89 -0.2 343,019 + +1.6 343,021 + +0.3 343,039 + -0.2 343,043 + +0.4 343,043 + +0.2 343,043 + -1.0 343,043 + +1.0 343,043 + +0.7 343,044 - +1.3 343,119 + -0.3 343,120 - -1.1 343,125 + +1.9
Or see this region's nucleotide sequence