Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17005 and HMPREF1058_RS17000 are separated by 233 nucleotides HMPREF1058_RS17000 and HMPREF1058_RS16995 are separated by 25 nucleotides HMPREF1058_RS16995 and HMPREF1058_RS16990 are separated by 12 nucleotides HMPREF1058_RS16990 and HMPREF1058_RS16985 are separated by 116 nucleotides
HMPREF1058_RS17005: HMPREF1058_RS17005 - DUF4251 domain-containing protein, at 541,921 to 542,475
_RS17005
HMPREF1058_RS17000: HMPREF1058_RS17000 - DUF4251 domain-containing protein, at 542,709 to 543,266
_RS17000
HMPREF1058_RS16995: HMPREF1058_RS16995 - DUF4136 domain-containing protein, at 543,292 to 543,924
_RS16995
HMPREF1058_RS16990: HMPREF1058_RS16990 - porin family protein, at 543,937 to 544,575
_RS16990
HMPREF1058_RS16985: HMPREF1058_RS16985 - sensor histidine kinase, at 544,692 to 545,735
_RS16985
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 542.295 kb on - strand, within HMPREF1058_RS17005 at 542.313 kb on - strand, within HMPREF1058_RS17005 at 542.325 kb on + strand, within HMPREF1058_RS17005 at 542.326 kb on - strand, within HMPREF1058_RS17005 at 542.383 kb on - strand, within HMPREF1058_RS17005 at 542.385 kb on - strand, within HMPREF1058_RS17005 at 542.483 kb on - strand at 542.485 kb on - strand at 542.628 kb on + strand at 542.701 kb on + strand at 542.706 kb on - strand at 542.728 kb on + strand at 542.729 kb on - strand at 542.734 kb on + strand at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.096 kb on - strand, within HMPREF1058_RS17000 at 543.170 kb on - strand, within HMPREF1058_RS17000 at 543.264 kb on + strand at 543.264 kb on + strand at 543.270 kb on - strand at 543.383 kb on - strand, within HMPREF1058_RS16995 at 543.392 kb on - strand, within HMPREF1058_RS16995 at 543.440 kb on - strand at 543.558 kb on - strand, within HMPREF1058_RS16995 at 543.717 kb on + strand, within HMPREF1058_RS16995 at 543.718 kb on + strand, within HMPREF1058_RS16995 at 543.724 kb on + strand, within HMPREF1058_RS16995 at 543.725 kb on - strand, within HMPREF1058_RS16995 at 543.836 kb on - strand, within HMPREF1058_RS16995 at 543.870 kb on - strand at 543.975 kb on + strand at 543.975 kb on + strand at 543.995 kb on + strand at 544.017 kb on + strand, within HMPREF1058_RS16990 at 544.325 kb on - strand, within HMPREF1058_RS16990 at 544.352 kb on - strand, within HMPREF1058_RS16990 at 544.370 kb on - strand, within HMPREF1058_RS16990 at 544.383 kb on - strand, within HMPREF1058_RS16990 at 544.481 kb on + strand, within HMPREF1058_RS16990 at 544.483 kb on + strand, within HMPREF1058_RS16990 at 544.484 kb on - strand, within HMPREF1058_RS16990 at 544.486 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand at 544.489 kb on - strand, within HMPREF1058_RS16990 at 544.553 kb on + strand at 544.559 kb on + strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.778 kb on - strand at 544.779 kb on + strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.781 kb on + strand at 544.782 kb on - strand at 544.876 kb on + strand, within HMPREF1058_RS16985
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 542,295 - HMPREF1058_RS17005 0.67 +0.5 542,313 - HMPREF1058_RS17005 0.71 +0.5 542,325 + HMPREF1058_RS17005 0.73 +1.0 542,326 - HMPREF1058_RS17005 0.73 -0.7 542,383 - HMPREF1058_RS17005 0.83 +1.2 542,385 - HMPREF1058_RS17005 0.84 -0.3 542,483 - -0.0 542,485 - -0.5 542,628 + -0.1 542,701 + +0.1 542,706 - -0.5 542,728 + -0.5 542,729 - -1.8 542,734 + +1.2 543,083 + HMPREF1058_RS17000 0.67 -0.0 543,083 + HMPREF1058_RS17000 0.67 +0.4 543,083 + HMPREF1058_RS17000 0.67 +1.0 543,084 - HMPREF1058_RS17000 0.67 +0.1 543,084 - HMPREF1058_RS17000 0.67 -1.1 543,096 - HMPREF1058_RS17000 0.69 +0.2 543,170 - HMPREF1058_RS17000 0.83 +0.5 543,264 + +1.2 543,264 + -0.6 543,270 - -1.7 543,383 - HMPREF1058_RS16995 0.14 -1.5 543,392 - HMPREF1058_RS16995 0.16 -2.1 543,440 - -0.3 543,558 - HMPREF1058_RS16995 0.42 -0.5 543,717 + HMPREF1058_RS16995 0.67 -0.6 543,718 + HMPREF1058_RS16995 0.67 -0.5 543,724 + HMPREF1058_RS16995 0.68 -0.5 543,725 - HMPREF1058_RS16995 0.68 +0.2 543,836 - HMPREF1058_RS16995 0.86 -1.7 543,870 - -0.1 543,975 + -0.1 543,975 + +1.0 543,995 + -0.3 544,017 + HMPREF1058_RS16990 0.13 -0.0 544,325 - HMPREF1058_RS16990 0.61 +0.1 544,352 - HMPREF1058_RS16990 0.65 -1.1 544,370 - HMPREF1058_RS16990 0.68 -0.8 544,383 - HMPREF1058_RS16990 0.70 +3.2 544,481 + HMPREF1058_RS16990 0.85 +0.1 544,483 + HMPREF1058_RS16990 0.85 -0.1 544,484 - HMPREF1058_RS16990 0.86 -1.3 544,486 + HMPREF1058_RS16990 0.86 +0.7 544,488 + HMPREF1058_RS16990 0.86 +0.8 544,488 + +1.2 544,489 - HMPREF1058_RS16990 0.86 +0.5 544,553 + +0.4 544,559 + +1.2 544,777 + +1.5 544,777 + +0.2 544,777 + -0.8 544,778 - -0.6 544,779 + -0.0 544,780 - -1.1 544,780 - +2.2 544,780 - -0.3 544,781 + -1.3 544,782 - -0.5 544,876 + HMPREF1058_RS16985 0.18 +0.2
Or see this region's nucleotide sequence