Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16820 and HMPREF1058_RS16815 are separated by 99 nucleotides HMPREF1058_RS16815 and HMPREF1058_RS16810 are separated by 410 nucleotides
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
Position (kb) 588
589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.348 kb on + strand, within HMPREF1058_RS16820 at 587.411 kb on + strand, within HMPREF1058_RS16820 at 587.412 kb on - strand, within HMPREF1058_RS16820 at 587.431 kb on - strand, within HMPREF1058_RS16820 at 587.500 kb on - strand, within HMPREF1058_RS16820 at 587.512 kb on - strand, within HMPREF1058_RS16820 at 587.640 kb on - strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on + strand, within HMPREF1058_RS16820 at 587.743 kb on - strand, within HMPREF1058_RS16820 at 587.811 kb on - strand, within HMPREF1058_RS16820 at 587.835 kb on + strand, within HMPREF1058_RS16820 at 587.916 kb on - strand, within HMPREF1058_RS16820 at 587.940 kb on - strand, within HMPREF1058_RS16820 at 588.045 kb on + strand at 588.045 kb on + strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.046 kb on - strand at 588.047 kb on + strand at 588.048 kb on - strand at 588.059 kb on + strand at 588.074 kb on - strand at 588.075 kb on + strand at 588.099 kb on - strand at 588.129 kb on + strand at 588.267 kb on + strand at 588.336 kb on - strand at 588.339 kb on - strand at 588.359 kb on + strand at 588.463 kb on - strand at 588.464 kb on + strand at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.519 kb on - strand, within HMPREF1058_RS16815 at 588.608 kb on - strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.614 kb on + strand, within HMPREF1058_RS16815 at 588.691 kb on - strand, within HMPREF1058_RS16815 at 588.703 kb on - strand at 588.708 kb on - strand, within HMPREF1058_RS16815 at 588.851 kb on + strand, within HMPREF1058_RS16815 at 588.852 kb on - strand, within HMPREF1058_RS16815 at 588.853 kb on + strand, within HMPREF1058_RS16815 at 588.910 kb on + strand, within HMPREF1058_RS16815 at 588.936 kb on + strand, within HMPREF1058_RS16815 at 588.939 kb on - strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.967 kb on + strand, within HMPREF1058_RS16815 at 588.971 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.001 kb on + strand, within HMPREF1058_RS16815 at 589.002 kb on - strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand, within HMPREF1058_RS16815 at 589.005 kb on + strand at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.006 kb on - strand, within HMPREF1058_RS16815 at 589.008 kb on - strand, within HMPREF1058_RS16815 at 589.141 kb on + strand, within HMPREF1058_RS16815 at 589.262 kb on + strand, within HMPREF1058_RS16815 at 589.363 kb on + strand, within HMPREF1058_RS16815 at 589.370 kb on + strand, within HMPREF1058_RS16815 at 589.371 kb on - strand, within HMPREF1058_RS16815 at 589.418 kb on + strand, within HMPREF1058_RS16815 at 589.511 kb on + strand, within HMPREF1058_RS16815 at 589.544 kb on + strand, within HMPREF1058_RS16815 at 589.677 kb on + strand, within HMPREF1058_RS16815 at 589.730 kb on + strand, within HMPREF1058_RS16815 at 589.773 kb on - strand, within HMPREF1058_RS16815 at 589.775 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.818 kb on + strand, within HMPREF1058_RS16815 at 589.819 kb on - strand, within HMPREF1058_RS16815 at 589.824 kb on - strand, within HMPREF1058_RS16815 at 589.842 kb on + strand, within HMPREF1058_RS16815 at 589.843 kb on - strand, within HMPREF1058_RS16815 at 589.923 kb on + strand at 589.940 kb on + strand at 589.972 kb on - strand at 589.980 kb on + strand at 589.981 kb on - strand at 590.097 kb on - strand at 590.107 kb on + strand at 590.118 kb on - strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.120 kb on - strand at 590.120 kb on - strand at 590.166 kb on - strand at 590.175 kb on + strand at 590.176 kb on - strand at 590.180 kb on - strand at 590.186 kb on - strand at 590.192 kb on - strand at 590.192 kb on - strand at 590.239 kb on + strand at 590.239 kb on + strand at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 587,308 + HMPREF1058_RS16820 0.48 -2.5 587,308 + HMPREF1058_RS16820 0.48 -0.3 587,308 + HMPREF1058_RS16820 0.48 -2.2 587,308 + HMPREF1058_RS16820 0.48 +1.4 587,308 + HMPREF1058_RS16820 0.48 -3.9 587,309 + HMPREF1058_RS16820 0.48 -3.3 587,309 - HMPREF1058_RS16820 0.48 -0.3 587,309 - HMPREF1058_RS16820 0.48 -2.5 587,309 - HMPREF1058_RS16820 0.48 +1.2 587,348 + HMPREF1058_RS16820 0.50 -0.6 587,411 + HMPREF1058_RS16820 0.54 -3.0 587,412 - HMPREF1058_RS16820 0.54 -1.4 587,431 - HMPREF1058_RS16820 0.55 -3.1 587,500 - HMPREF1058_RS16820 0.59 -1.9 587,512 - HMPREF1058_RS16820 0.60 -3.9 587,640 - HMPREF1058_RS16820 0.67 -2.0 587,743 + HMPREF1058_RS16820 0.74 -1.9 587,743 + HMPREF1058_RS16820 0.74 -2.7 587,743 - HMPREF1058_RS16820 0.74 -1.8 587,811 - HMPREF1058_RS16820 0.78 +2.2 587,835 + HMPREF1058_RS16820 0.79 -0.8 587,916 - HMPREF1058_RS16820 0.84 +0.2 587,940 - HMPREF1058_RS16820 0.85 -2.7 588,045 + -0.6 588,045 + -1.9 588,046 - -0.7 588,046 - -0.2 588,046 - +0.5 588,047 + -2.7 588,048 - -0.1 588,059 + -0.9 588,074 - -2.8 588,075 + +0.2 588,099 - -2.8 588,129 + -1.5 588,267 + -1.8 588,336 - -1.3 588,339 - -0.9 588,359 + -1.6 588,463 - -3.0 588,464 + +1.2 588,519 - HMPREF1058_RS16815 0.13 -3.1 588,519 - HMPREF1058_RS16815 0.13 -1.9 588,608 - HMPREF1058_RS16815 0.18 -4.0 588,614 + HMPREF1058_RS16815 0.18 -1.1 588,614 + HMPREF1058_RS16815 0.18 -2.3 588,614 + HMPREF1058_RS16815 0.18 -0.9 588,691 - HMPREF1058_RS16815 0.22 -1.5 588,703 - -1.3 588,708 - HMPREF1058_RS16815 0.23 -1.4 588,851 + HMPREF1058_RS16815 0.31 -2.1 588,852 - HMPREF1058_RS16815 0.31 -2.2 588,853 + HMPREF1058_RS16815 0.31 -1.8 588,910 + HMPREF1058_RS16815 0.34 -2.4 588,936 + HMPREF1058_RS16815 0.36 -1.3 588,939 - HMPREF1058_RS16815 0.36 -2.5 588,967 + HMPREF1058_RS16815 0.37 -1.0 588,967 + HMPREF1058_RS16815 0.37 -0.3 588,971 + HMPREF1058_RS16815 0.38 -1.5 589,001 + HMPREF1058_RS16815 0.39 -2.7 589,001 + HMPREF1058_RS16815 0.39 -0.1 589,002 - HMPREF1058_RS16815 0.39 -1.2 589,005 + HMPREF1058_RS16815 0.40 -1.3 589,005 + HMPREF1058_RS16815 0.40 -2.4 589,005 + -0.6 589,006 - HMPREF1058_RS16815 0.40 -2.2 589,006 - HMPREF1058_RS16815 0.40 -2.1 589,006 - HMPREF1058_RS16815 0.40 -0.3 589,006 - HMPREF1058_RS16815 0.40 -3.0 589,008 - HMPREF1058_RS16815 0.40 -2.8 589,141 + HMPREF1058_RS16815 0.47 -0.8 589,262 + HMPREF1058_RS16815 0.54 -3.1 589,363 + HMPREF1058_RS16815 0.59 -3.6 589,370 + HMPREF1058_RS16815 0.60 -1.5 589,371 - HMPREF1058_RS16815 0.60 -2.9 589,418 + HMPREF1058_RS16815 0.63 -2.2 589,511 + HMPREF1058_RS16815 0.68 +2.2 589,544 + HMPREF1058_RS16815 0.69 -4.0 589,677 + HMPREF1058_RS16815 0.77 -1.8 589,730 + HMPREF1058_RS16815 0.80 -2.4 589,773 - HMPREF1058_RS16815 0.82 -2.5 589,775 - HMPREF1058_RS16815 0.82 -2.3 589,817 - HMPREF1058_RS16815 0.85 -0.7 589,817 - HMPREF1058_RS16815 0.85 -1.8 589,818 + HMPREF1058_RS16815 0.85 -3.3 589,819 - HMPREF1058_RS16815 0.85 -2.7 589,824 - HMPREF1058_RS16815 0.85 -1.5 589,842 + HMPREF1058_RS16815 0.86 -1.6 589,843 - HMPREF1058_RS16815 0.86 -1.6 589,923 + -3.5 589,940 + -3.6 589,972 - -0.8 589,980 + -2.2 589,981 - -4.4 590,097 - -2.8 590,107 + -2.5 590,118 - -0.2 590,119 + -2.7 590,119 + -1.0 590,119 + -2.5 590,120 - +0.0 590,120 - -0.3 590,166 - +0.9 590,175 + -2.1 590,176 - -1.0 590,180 - -0.9 590,186 - -0.5 590,192 - +0.0 590,192 - -0.0 590,239 + -2.1 590,239 + -2.0 590,261 + -2.7 590,267 - +0.4 590,270 - -0.9 590,273 - +0.2 590,279 - -2.3 590,279 - +0.4 590,426 - +0.1 590,506 - -0.4 590,506 - +0.4 590,529 + -0.6 590,529 + -0.3 590,530 - +1.9 590,530 - -0.7 590,530 - -0.1 590,557 + HMPREF1058_RS16810 0.14 +1.2 590,558 - HMPREF1058_RS16810 0.14 -0.3 590,558 - HMPREF1058_RS16810 0.14 +1.4 590,578 - HMPREF1058_RS16810 0.20 -0.1 590,578 - HMPREF1058_RS16810 0.20 -0.4 590,605 + HMPREF1058_RS16810 0.27 -0.4 590,606 - HMPREF1058_RS16810 0.27 +1.5 590,717 - HMPREF1058_RS16810 0.57 +1.7 590,786 + HMPREF1058_RS16810 0.75 +0.4 590,787 - HMPREF1058_RS16810 0.75 +0.3 590,830 + HMPREF1058_RS16810 0.87 -0.6 590,843 + -1.2 590,867 + +0.4 590,919 - +1.1 590,926 - -0.1 590,936 + +0.2 590,937 - +0.5 590,947 + +0.1 590,950 + -1.1 590,951 - -0.5
Or see this region's nucleotide sequence