Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides HMPREF1058_RS16505 and HMPREF1058_RS16500 are separated by 27 nucleotides HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505 at 654.897 kb on + strand, within HMPREF1058_RS16505 at 654.898 kb on - strand, within HMPREF1058_RS16505 at 655.069 kb on + strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505 at 655.464 kb on + strand, within HMPREF1058_RS16505 at 655.508 kb on + strand, within HMPREF1058_RS16505 at 655.512 kb on + strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.629 kb on - strand, within HMPREF1058_RS16505 at 655.775 kb on + strand, within HMPREF1058_RS16505 at 655.776 kb on - strand, within HMPREF1058_RS16505 at 655.810 kb on + strand, within HMPREF1058_RS16505 at 655.865 kb on + strand, within HMPREF1058_RS16505 at 655.870 kb on + strand, within HMPREF1058_RS16505 at 655.973 kb on - strand at 656.085 kb on + strand at 656.086 kb on - strand at 656.141 kb on + strand at 656.142 kb on - strand at 656.367 kb on + strand, within HMPREF1058_RS16500 at 656.371 kb on + strand, within HMPREF1058_RS16500 at 656.377 kb on - strand, within HMPREF1058_RS16500 at 656.393 kb on + strand, within HMPREF1058_RS16500 at 656.470 kb on - strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 653,587 - HMPREF1058_RS16515 0.72 +0.2 653,587 - HMPREF1058_RS16515 0.72 +0.3 653,614 + HMPREF1058_RS16515 0.75 -0.1 653,634 + HMPREF1058_RS16515 0.77 +0.1 653,647 + HMPREF1058_RS16515 0.78 -2.7 653,688 + HMPREF1058_RS16515 0.82 +1.0 653,689 - HMPREF1058_RS16515 0.82 -0.7 653,696 - HMPREF1058_RS16515 0.83 +0.9 653,696 - HMPREF1058_RS16515 0.83 -0.9 653,775 + -0.8 653,776 - -0.6 653,776 - +0.1 653,776 - +3.8 653,919 - -0.0 653,997 + +0.1 654,011 - -0.5 654,108 - HMPREF1058_RS16510 0.19 -1.1 654,122 - HMPREF1058_RS16510 0.23 +0.1 654,173 + HMPREF1058_RS16510 0.35 -0.3 654,173 + HMPREF1058_RS16510 0.35 +0.2 654,204 + HMPREF1058_RS16510 0.43 +0.0 654,204 + HMPREF1058_RS16510 0.43 -1.4 654,478 + -0.3 654,478 + +0.1 654,479 - -1.2 654,499 - -1.8 654,540 + +1.5 654,541 - -0.6 654,640 - -0.2 654,794 + HMPREF1058_RS16505 0.16 -1.2 654,794 + HMPREF1058_RS16505 0.16 -0.3 654,794 + HMPREF1058_RS16505 0.16 -1.6 654,795 - HMPREF1058_RS16505 0.16 -0.6 654,897 + HMPREF1058_RS16505 0.23 -2.5 654,898 - HMPREF1058_RS16505 0.23 -1.1 655,069 + HMPREF1058_RS16505 0.34 -0.7 655,118 - HMPREF1058_RS16505 0.37 -0.1 655,118 - HMPREF1058_RS16505 0.37 +2.5 655,119 + HMPREF1058_RS16505 0.37 -1.6 655,119 + HMPREF1058_RS16505 0.37 +0.4 655,120 - HMPREF1058_RS16505 0.37 -2.1 655,120 - HMPREF1058_RS16505 0.37 -1.7 655,137 + HMPREF1058_RS16505 0.38 -2.3 655,278 - HMPREF1058_RS16505 0.47 -0.8 655,283 - HMPREF1058_RS16505 0.48 -0.7 655,319 + HMPREF1058_RS16505 0.50 +0.8 655,319 + -1.2 655,394 - HMPREF1058_RS16505 0.55 -0.1 655,398 + HMPREF1058_RS16505 0.55 -0.3 655,399 - HMPREF1058_RS16505 0.55 +0.0 655,399 - HMPREF1058_RS16505 0.55 +1.8 655,402 + HMPREF1058_RS16505 0.55 +0.2 655,402 + HMPREF1058_RS16505 0.55 -1.7 655,402 + HMPREF1058_RS16505 0.55 +0.7 655,403 - HMPREF1058_RS16505 0.55 +1.2 655,425 - HMPREF1058_RS16505 0.57 -1.9 655,464 + HMPREF1058_RS16505 0.59 -1.2 655,508 + HMPREF1058_RS16505 0.62 -3.0 655,512 + HMPREF1058_RS16505 0.62 -0.9 655,513 - HMPREF1058_RS16505 0.62 -0.3 655,513 - HMPREF1058_RS16505 0.62 -1.4 655,628 + HMPREF1058_RS16505 0.70 +1.8 655,628 + HMPREF1058_RS16505 0.70 -2.5 655,629 - HMPREF1058_RS16505 0.70 -3.0 655,775 + HMPREF1058_RS16505 0.79 +0.5 655,776 - HMPREF1058_RS16505 0.79 -1.2 655,810 + HMPREF1058_RS16505 0.81 +0.7 655,865 + HMPREF1058_RS16505 0.85 -2.6 655,870 + HMPREF1058_RS16505 0.85 -1.5 655,973 - -1.8 656,085 + -1.6 656,086 - -1.8 656,141 + -2.3 656,142 - -2.1 656,367 + HMPREF1058_RS16500 0.26 +0.1 656,371 + HMPREF1058_RS16500 0.26 -0.1 656,377 - HMPREF1058_RS16500 0.27 +0.2 656,393 + HMPREF1058_RS16500 0.29 -0.4 656,470 - HMPREF1058_RS16500 0.37 -0.9 656,641 + HMPREF1058_RS16500 0.55 -1.3 656,641 + HMPREF1058_RS16500 0.55 -0.1 656,642 - HMPREF1058_RS16500 0.56 -1.6 656,754 - HMPREF1058_RS16500 0.68 -2.1 656,840 + HMPREF1058_RS16500 0.77 -1.3 656,948 + HMPREF1058_RS16500 0.88 +2.2 656,995 - -0.1 656,999 - +1.2 656,999 - -0.8 657,052 + +0.2
Or see this region's nucleotide sequence