Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16505 and HMPREF1058_RS16500 are separated by 27 nucleotides HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides HMPREF1058_RS16495 and HMPREF1058_RS16490 are separated by 1 nucleotides
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
HMPREF1058_RS16490: HMPREF1058_RS16490 - sodium ion-translocating decarboxylase subunit beta, at 657,511 to 658,671
_RS16490
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505 at 655.464 kb on + strand, within HMPREF1058_RS16505 at 655.508 kb on + strand, within HMPREF1058_RS16505 at 655.512 kb on + strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.513 kb on - strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.628 kb on + strand, within HMPREF1058_RS16505 at 655.629 kb on - strand, within HMPREF1058_RS16505 at 655.775 kb on + strand, within HMPREF1058_RS16505 at 655.776 kb on - strand, within HMPREF1058_RS16505 at 655.810 kb on + strand, within HMPREF1058_RS16505 at 655.865 kb on + strand, within HMPREF1058_RS16505 at 655.870 kb on + strand, within HMPREF1058_RS16505 at 655.973 kb on - strand at 656.085 kb on + strand at 656.086 kb on - strand at 656.141 kb on + strand at 656.142 kb on - strand at 656.367 kb on + strand, within HMPREF1058_RS16500 at 656.371 kb on + strand, within HMPREF1058_RS16500 at 656.377 kb on - strand, within HMPREF1058_RS16500 at 656.393 kb on + strand, within HMPREF1058_RS16500 at 656.470 kb on - strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand at 657.113 kb on - strand at 657.134 kb on + strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.347 kb on - strand, within HMPREF1058_RS16495 at 657.457 kb on + strand, within HMPREF1058_RS16495 at 657.461 kb on + strand, within HMPREF1058_RS16495 at 657.508 kb on - strand at 657.546 kb on - strand at 657.546 kb on - strand at 657.562 kb on + strand at 657.562 kb on + strand at 657.563 kb on - strand at 657.564 kb on + strand at 657.565 kb on - strand at 657.595 kb on - strand at 657.600 kb on - strand at 657.612 kb on - strand at 657.618 kb on - strand at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.629 kb on - strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.767 kb on + strand, within HMPREF1058_RS16490 at 657.770 kb on - strand, within HMPREF1058_RS16490 at 657.781 kb on - strand, within HMPREF1058_RS16490 at 657.804 kb on + strand, within HMPREF1058_RS16490 at 657.812 kb on + strand, within HMPREF1058_RS16490 at 657.908 kb on - strand, within HMPREF1058_RS16490 at 658.011 kb on - strand, within HMPREF1058_RS16490 at 658.048 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 655,137 + HMPREF1058_RS16505 0.38 -2.3 655,278 - HMPREF1058_RS16505 0.47 -0.8 655,283 - HMPREF1058_RS16505 0.48 -0.7 655,319 + HMPREF1058_RS16505 0.50 +0.8 655,319 + -1.2 655,394 - HMPREF1058_RS16505 0.55 -0.1 655,398 + HMPREF1058_RS16505 0.55 -0.3 655,399 - HMPREF1058_RS16505 0.55 +0.0 655,399 - HMPREF1058_RS16505 0.55 +1.8 655,402 + HMPREF1058_RS16505 0.55 +0.2 655,402 + HMPREF1058_RS16505 0.55 -1.7 655,402 + HMPREF1058_RS16505 0.55 +0.7 655,403 - HMPREF1058_RS16505 0.55 +1.2 655,425 - HMPREF1058_RS16505 0.57 -1.9 655,464 + HMPREF1058_RS16505 0.59 -1.2 655,508 + HMPREF1058_RS16505 0.62 -3.0 655,512 + HMPREF1058_RS16505 0.62 -0.9 655,513 - HMPREF1058_RS16505 0.62 -0.3 655,513 - HMPREF1058_RS16505 0.62 -1.4 655,628 + HMPREF1058_RS16505 0.70 +1.8 655,628 + HMPREF1058_RS16505 0.70 -2.5 655,629 - HMPREF1058_RS16505 0.70 -3.0 655,775 + HMPREF1058_RS16505 0.79 +0.5 655,776 - HMPREF1058_RS16505 0.79 -1.2 655,810 + HMPREF1058_RS16505 0.81 +0.7 655,865 + HMPREF1058_RS16505 0.85 -2.6 655,870 + HMPREF1058_RS16505 0.85 -1.5 655,973 - -1.8 656,085 + -1.6 656,086 - -1.8 656,141 + -2.3 656,142 - -2.1 656,367 + HMPREF1058_RS16500 0.26 +0.1 656,371 + HMPREF1058_RS16500 0.26 -0.1 656,377 - HMPREF1058_RS16500 0.27 +0.2 656,393 + HMPREF1058_RS16500 0.29 -0.4 656,470 - HMPREF1058_RS16500 0.37 -0.9 656,641 + HMPREF1058_RS16500 0.55 -1.3 656,641 + HMPREF1058_RS16500 0.55 -0.1 656,642 - HMPREF1058_RS16500 0.56 -1.6 656,754 - HMPREF1058_RS16500 0.68 -2.1 656,840 + HMPREF1058_RS16500 0.77 -1.3 656,948 + HMPREF1058_RS16500 0.88 +2.2 656,995 - -0.1 656,999 - +1.2 656,999 - -0.8 657,052 + +0.2 657,113 - +0.5 657,134 + HMPREF1058_RS16495 0.13 -0.9 657,137 - HMPREF1058_RS16495 0.14 -0.8 657,137 - HMPREF1058_RS16495 0.14 +0.1 657,263 + HMPREF1058_RS16495 0.43 -0.6 657,263 + HMPREF1058_RS16495 0.43 -1.8 657,347 - HMPREF1058_RS16495 0.62 +2.2 657,457 + HMPREF1058_RS16495 0.88 -0.9 657,461 + HMPREF1058_RS16495 0.89 -0.6 657,508 - -0.7 657,546 - -1.7 657,546 - -0.7 657,562 + -0.2 657,562 + +0.5 657,563 - -0.2 657,564 + -0.1 657,565 - +0.3 657,595 - -1.9 657,600 - -2.1 657,612 - -1.5 657,618 - +0.8 657,627 - HMPREF1058_RS16490 0.10 -0.8 657,627 - HMPREF1058_RS16490 0.10 -0.4 657,628 + HMPREF1058_RS16490 0.10 -0.2 657,628 + HMPREF1058_RS16490 0.10 -1.3 657,629 - HMPREF1058_RS16490 0.10 -0.9 657,699 + HMPREF1058_RS16490 0.16 +0.2 657,699 + HMPREF1058_RS16490 0.16 -0.6 657,740 - HMPREF1058_RS16490 0.20 -0.7 657,740 - HMPREF1058_RS16490 0.20 -2.0 657,740 - HMPREF1058_RS16490 0.20 +1.3 657,740 - HMPREF1058_RS16490 0.20 +0.8 657,767 + HMPREF1058_RS16490 0.22 -0.0 657,770 - HMPREF1058_RS16490 0.22 -1.3 657,781 - HMPREF1058_RS16490 0.23 +0.1 657,804 + HMPREF1058_RS16490 0.25 +0.4 657,812 + HMPREF1058_RS16490 0.26 +0.1 657,908 - HMPREF1058_RS16490 0.34 +0.5 658,011 - HMPREF1058_RS16490 0.43 +1.2 658,048 + HMPREF1058_RS16490 0.46 +0.4 658,054 + HMPREF1058_RS16490 0.47 +1.9 658,054 + -0.8
Or see this region's nucleotide sequence