Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16410 and HMPREF1058_RS16405 are separated by 178 nucleotides HMPREF1058_RS16405 and HMPREF1058_RS16400 are separated by 92 nucleotides HMPREF1058_RS16400 and HMPREF1058_RS16395 are separated by 214 nucleotides HMPREF1058_RS16395 and HMPREF1058_RS16390 are separated by 2 nucleotides
HMPREF1058_RS16410: HMPREF1058_RS16410 - L-serine ammonia-lyase, at 678,062 to 679,270
_RS16410
HMPREF1058_RS16405: HMPREF1058_RS16405 - PepSY-like domain-containing protein, at 679,449 to 679,889
_RS16405
HMPREF1058_RS16400: HMPREF1058_RS16400 - DUF4738 domain-containing protein, at 679,982 to 680,551
_RS16400
HMPREF1058_RS16395: HMPREF1058_RS16395 - TrkA family potassium uptake protein, at 680,766 to 681,452
_RS16395
HMPREF1058_RS16390: HMPREF1058_RS16390 - potassium transporter, at 681,455 to 683,284
_RS16390
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.002 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.094 kb on + strand, within HMPREF1058_RS16410 at 679.215 kb on + strand at 679.216 kb on - strand at 679.217 kb on + strand at 679.217 kb on + strand at 679.220 kb on - strand at 679.309 kb on - strand at 679.309 kb on - strand at 679.337 kb on + strand at 679.338 kb on - strand at 679.356 kb on - strand at 679.395 kb on + strand at 679.407 kb on - strand at 679.421 kb on + strand at 679.422 kb on - strand at 679.492 kb on - strand at 679.535 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.557 kb on - strand, within HMPREF1058_RS16405 at 679.567 kb on + strand, within HMPREF1058_RS16405 at 679.580 kb on + strand, within HMPREF1058_RS16405 at 679.582 kb on + strand, within HMPREF1058_RS16405 at 679.592 kb on + strand, within HMPREF1058_RS16405 at 679.638 kb on + strand, within HMPREF1058_RS16405 at 679.639 kb on - strand, within HMPREF1058_RS16405 at 679.740 kb on - strand, within HMPREF1058_RS16405 at 679.863 kb on - strand at 679.899 kb on + strand at 679.983 kb on + strand at 680.063 kb on - strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.086 kb on - strand, within HMPREF1058_RS16400 at 680.123 kb on + strand, within HMPREF1058_RS16400 at 680.180 kb on - strand, within HMPREF1058_RS16400 at 680.204 kb on + strand, within HMPREF1058_RS16400 at 680.351 kb on + strand, within HMPREF1058_RS16400 at 680.362 kb on + strand, within HMPREF1058_RS16400 at 680.386 kb on + strand, within HMPREF1058_RS16400 at 680.399 kb on - strand, within HMPREF1058_RS16400 at 680.414 kb on - strand, within HMPREF1058_RS16400 at 680.510 kb on + strand at 680.511 kb on - strand at 680.511 kb on - strand at 680.539 kb on - strand at 680.540 kb on + strand at 680.579 kb on + strand at 680.679 kb on - strand at 680.679 kb on - strand at 680.690 kb on + strand at 680.700 kb on + strand at 680.767 kb on + strand at 680.888 kb on + strand, within HMPREF1058_RS16395 at 680.889 kb on - strand, within HMPREF1058_RS16395 at 680.920 kb on - strand, within HMPREF1058_RS16395 at 680.975 kb on + strand, within HMPREF1058_RS16395 at 680.976 kb on - strand, within HMPREF1058_RS16395 at 680.978 kb on - strand, within HMPREF1058_RS16395 at 681.016 kb on + strand, within HMPREF1058_RS16395 at 681.017 kb on - strand, within HMPREF1058_RS16395 at 681.017 kb on - strand, within HMPREF1058_RS16395 at 681.111 kb on - strand, within HMPREF1058_RS16395 at 681.113 kb on + strand, within HMPREF1058_RS16395 at 681.114 kb on - strand, within HMPREF1058_RS16395 at 681.118 kb on - strand, within HMPREF1058_RS16395 at 681.144 kb on - strand, within HMPREF1058_RS16395 at 681.169 kb on + strand, within HMPREF1058_RS16395 at 681.170 kb on - strand, within HMPREF1058_RS16395 at 681.170 kb on - strand, within HMPREF1058_RS16395 at 681.173 kb on + strand, within HMPREF1058_RS16395 at 681.173 kb on + strand, within HMPREF1058_RS16395 at 681.174 kb on - strand, within HMPREF1058_RS16395 at 681.441 kb on - strand at 681.445 kb on + strand at 681.453 kb on - strand at 681.457 kb on - strand at 681.483 kb on + strand at 681.511 kb on + strand at 681.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 679,002 - HMPREF1058_RS16410 0.78 -0.6 679,079 - HMPREF1058_RS16410 0.84 -0.1 679,079 - HMPREF1058_RS16410 0.84 +0.0 679,094 + HMPREF1058_RS16410 0.85 -0.0 679,215 + +0.2 679,216 - +0.7 679,217 + -0.6 679,217 + -0.4 679,220 - -0.4 679,309 - +0.4 679,309 - +0.7 679,337 + -0.1 679,338 - +0.9 679,356 - +0.5 679,395 + +0.6 679,407 - +0.2 679,421 + -1.9 679,422 - +0.8 679,492 - +2.0 679,535 + HMPREF1058_RS16405 0.20 +0.2 679,556 + HMPREF1058_RS16405 0.24 +0.0 679,556 + HMPREF1058_RS16405 0.24 +0.0 679,557 - HMPREF1058_RS16405 0.24 +0.3 679,567 + HMPREF1058_RS16405 0.27 +0.3 679,580 + HMPREF1058_RS16405 0.30 +0.3 679,582 + HMPREF1058_RS16405 0.30 +0.3 679,592 + HMPREF1058_RS16405 0.32 -0.5 679,638 + HMPREF1058_RS16405 0.43 +0.1 679,639 - HMPREF1058_RS16405 0.43 +0.2 679,740 - HMPREF1058_RS16405 0.66 +0.9 679,863 - +0.1 679,899 + +0.2 679,983 + +0.4 680,063 - HMPREF1058_RS16400 0.14 -0.2 680,085 + HMPREF1058_RS16400 0.18 -0.5 680,085 + HMPREF1058_RS16400 0.18 +0.0 680,086 - HMPREF1058_RS16400 0.18 -0.3 680,123 + HMPREF1058_RS16400 0.25 -0.5 680,180 - HMPREF1058_RS16400 0.35 -0.9 680,204 + HMPREF1058_RS16400 0.39 -0.8 680,351 + HMPREF1058_RS16400 0.65 -1.7 680,362 + HMPREF1058_RS16400 0.67 -0.2 680,386 + HMPREF1058_RS16400 0.71 -1.9 680,399 - HMPREF1058_RS16400 0.73 -0.1 680,414 - HMPREF1058_RS16400 0.76 +0.1 680,510 + -0.2 680,511 - +0.0 680,511 - -0.3 680,539 - +0.1 680,540 + +2.3 680,579 + +0.3 680,679 - -0.2 680,679 - -0.3 680,690 + +0.1 680,700 + +0.0 680,767 + +0.3 680,888 + HMPREF1058_RS16395 0.18 -0.8 680,889 - HMPREF1058_RS16395 0.18 +0.3 680,920 - HMPREF1058_RS16395 0.22 +0.5 680,975 + HMPREF1058_RS16395 0.30 +0.5 680,976 - HMPREF1058_RS16395 0.31 -0.4 680,978 - HMPREF1058_RS16395 0.31 +0.8 681,016 + HMPREF1058_RS16395 0.36 +1.1 681,017 - HMPREF1058_RS16395 0.37 +0.8 681,017 - HMPREF1058_RS16395 0.37 +1.8 681,111 - HMPREF1058_RS16395 0.50 -0.8 681,113 + HMPREF1058_RS16395 0.51 -0.0 681,114 - HMPREF1058_RS16395 0.51 -0.0 681,118 - HMPREF1058_RS16395 0.51 +0.5 681,144 - HMPREF1058_RS16395 0.55 -0.6 681,169 + HMPREF1058_RS16395 0.59 -2.0 681,170 - HMPREF1058_RS16395 0.59 +0.0 681,170 - HMPREF1058_RS16395 0.59 -0.6 681,173 + HMPREF1058_RS16395 0.59 +0.8 681,173 + HMPREF1058_RS16395 0.59 +0.6 681,174 - HMPREF1058_RS16395 0.59 +1.3 681,441 - -0.4 681,445 + -0.9 681,453 - -0.8 681,457 - -2.2 681,483 + +0.8 681,511 + +0.3 681,532 + -1.6
Or see this region's nucleotide sequence