Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14465

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14470 and HMPREF1058_RS14465 are separated by 7 nucleotidesHMPREF1058_RS14465 and HMPREF1058_RS14460 are separated by 376 nucleotides HMPREF1058_RS14470: HMPREF1058_RS14470 - hypothetical protein, at 1,193,017 to 1,194,018 _RS14470 HMPREF1058_RS14465: HMPREF1058_RS14465 - enoyl-ACP reductase, at 1,194,026 to 1,194,883 _RS14465 HMPREF1058_RS14460: HMPREF1058_RS14460 - glycoside hydrolase family 28 protein, at 1,195,260 to 1,196,879 _RS14460 Position (kb) 1194 1195Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1193.088 kb on + strandat 1193.138 kb on - strand, within HMPREF1058_RS14470at 1193.172 kb on + strand, within HMPREF1058_RS14470at 1193.194 kb on + strand, within HMPREF1058_RS14470at 1193.194 kb on + strand, within HMPREF1058_RS14470at 1193.195 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.202 kb on + strand, within HMPREF1058_RS14470at 1193.203 kb on - strand, within HMPREF1058_RS14470at 1193.228 kb on + strand, within HMPREF1058_RS14470at 1193.230 kb on + strand, within HMPREF1058_RS14470at 1193.230 kb on + strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.305 kb on - strand, within HMPREF1058_RS14470at 1193.344 kb on - strand, within HMPREF1058_RS14470at 1193.379 kb on + strand, within HMPREF1058_RS14470at 1193.385 kb on + strand, within HMPREF1058_RS14470at 1193.390 kb on - strand, within HMPREF1058_RS14470at 1193.463 kb on + strand, within HMPREF1058_RS14470at 1193.464 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.501 kb on + strand, within HMPREF1058_RS14470at 1193.502 kb on - strand, within HMPREF1058_RS14470at 1193.514 kb on - strand, within HMPREF1058_RS14470at 1193.515 kb on + strand, within HMPREF1058_RS14470at 1193.535 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.548 kb on - strand, within HMPREF1058_RS14470at 1193.563 kb on - strand, within HMPREF1058_RS14470at 1193.600 kb on - strand, within HMPREF1058_RS14470at 1193.631 kb on + strand, within HMPREF1058_RS14470at 1193.631 kb on + strand, within HMPREF1058_RS14470at 1193.632 kb on - strand, within HMPREF1058_RS14470at 1193.632 kb on - strand, within HMPREF1058_RS14470at 1193.748 kb on - strand, within HMPREF1058_RS14470at 1193.769 kb on + strand, within HMPREF1058_RS14470at 1193.804 kb on - strand, within HMPREF1058_RS14470at 1193.871 kb on + strand, within HMPREF1058_RS14470at 1193.885 kb on + strand, within HMPREF1058_RS14470at 1193.886 kb on - strand, within HMPREF1058_RS14470at 1193.886 kb on - strand, within HMPREF1058_RS14470at 1193.920 kb on + strandat 1193.921 kb on - strandat 1193.986 kb on + strandat 1193.986 kb on + strandat 1193.986 kb on + strandat 1193.995 kb on + strandat 1194.003 kb on + strandat 1194.021 kb on - strandat 1194.061 kb on - strandat 1194.061 kb on - strandat 1194.061 kb on - strandat 1194.138 kb on - strand, within HMPREF1058_RS14465at 1194.232 kb on + strand, within HMPREF1058_RS14465at 1194.233 kb on - strand, within HMPREF1058_RS14465at 1194.308 kb on + strand, within HMPREF1058_RS14465at 1194.309 kb on - strand, within HMPREF1058_RS14465at 1194.314 kb on - strand, within HMPREF1058_RS14465at 1194.404 kb on - strand, within HMPREF1058_RS14465at 1194.404 kb on - strand, within HMPREF1058_RS14465at 1194.406 kb on - strand, within HMPREF1058_RS14465at 1194.435 kb on + strand, within HMPREF1058_RS14465at 1194.521 kb on + strand, within HMPREF1058_RS14465at 1194.595 kb on + strand, within HMPREF1058_RS14465at 1194.772 kb on + strand, within HMPREF1058_RS14465at 1194.847 kb on + strandat 1194.877 kb on - strandat 1194.899 kb on - strandat 1194.932 kb on - strandat 1194.977 kb on - strandat 1194.997 kb on - strandat 1195.036 kb on + strandat 1195.036 kb on + strandat 1195.037 kb on - strandat 1195.042 kb on - strandat 1195.049 kb on - strandat 1195.077 kb on + strandat 1195.095 kb on - strandat 1195.116 kb on + strandat 1195.121 kb on - strandat 1195.133 kb on - strandat 1195.200 kb on - strandat 1195.248 kb on + strandat 1195.248 kb on + strandat 1195.249 kb on - strandat 1195.249 kb on - strandat 1195.251 kb on - strandat 1195.251 kb on - strandat 1195.252 kb on + strandat 1195.252 kb on + strandat 1195.253 kb on - strandat 1195.253 kb on - strandat 1195.270 kb on + strandat 1195.286 kb on - strandat 1195.366 kb on + strandat 1195.366 kb on + strandat 1195.367 kb on - strandat 1195.380 kb on + strandat 1195.380 kb on + strandat 1195.381 kb on - strandat 1195.421 kb on + strandat 1195.476 kb on - strand, within HMPREF1058_RS14460at 1195.499 kb on + strand, within HMPREF1058_RS14460at 1195.586 kb on - strand, within HMPREF1058_RS14460at 1195.603 kb on + strand, within HMPREF1058_RS14460at 1195.608 kb on - strand, within HMPREF1058_RS14460at 1195.627 kb on + strand, within HMPREF1058_RS14460at 1195.651 kb on + strand, within HMPREF1058_RS14460at 1195.652 kb on - strand, within HMPREF1058_RS14460at 1195.661 kb on + strand, within HMPREF1058_RS14460at 1195.722 kb on - strand, within HMPREF1058_RS14460at 1195.799 kb on + strand, within HMPREF1058_RS14460

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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1,193,088 + +0.3
1,193,138 - HMPREF1058_RS14470 0.12 -0.5
1,193,172 + HMPREF1058_RS14470 0.15 -1.7
1,193,194 + HMPREF1058_RS14470 0.18 -1.8
1,193,194 + HMPREF1058_RS14470 0.18 -0.3
1,193,195 - HMPREF1058_RS14470 0.18 -0.5
1,193,197 - HMPREF1058_RS14470 0.18 +0.0
1,193,197 - HMPREF1058_RS14470 0.18 +0.6
1,193,197 - HMPREF1058_RS14470 0.18 +1.0
1,193,197 - HMPREF1058_RS14470 0.18 -0.7
1,193,198 + HMPREF1058_RS14470 0.18 +0.0
1,193,198 + HMPREF1058_RS14470 0.18 -0.8
1,193,198 + HMPREF1058_RS14470 0.18 -0.2
1,193,198 + HMPREF1058_RS14470 0.18 -0.5
1,193,198 + HMPREF1058_RS14470 0.18 +0.3
1,193,198 + HMPREF1058_RS14470 0.18 -0.5
1,193,199 - HMPREF1058_RS14470 0.18 +0.7
1,193,199 - HMPREF1058_RS14470 0.18 -1.2
1,193,199 - HMPREF1058_RS14470 0.18 +0.2
1,193,199 - HMPREF1058_RS14470 0.18 -0.3
1,193,199 - HMPREF1058_RS14470 0.18 -0.4
1,193,199 - HMPREF1058_RS14470 0.18 +0.2
1,193,199 - HMPREF1058_RS14470 0.18 -0.1
1,193,199 - HMPREF1058_RS14470 0.18 +1.0
1,193,202 + HMPREF1058_RS14470 0.18 +1.0
1,193,203 - HMPREF1058_RS14470 0.19 -0.1
1,193,228 + HMPREF1058_RS14470 0.21 -2.2
1,193,230 + HMPREF1058_RS14470 0.21 +0.2
1,193,230 + HMPREF1058_RS14470 0.21 -0.1
1,193,231 - HMPREF1058_RS14470 0.21 -0.0
1,193,231 - HMPREF1058_RS14470 0.21 -0.3
1,193,231 - HMPREF1058_RS14470 0.21 -0.4
1,193,305 - HMPREF1058_RS14470 0.29 +0.3
1,193,344 - HMPREF1058_RS14470 0.33 -0.4
1,193,379 + HMPREF1058_RS14470 0.36 +0.0
1,193,385 + HMPREF1058_RS14470 0.37 -0.3
1,193,390 - HMPREF1058_RS14470 0.37 -1.6
1,193,463 + HMPREF1058_RS14470 0.45 -0.2
1,193,464 - HMPREF1058_RS14470 0.45 -0.4
1,193,499 - HMPREF1058_RS14470 0.48 -0.7
1,193,499 - HMPREF1058_RS14470 0.48 +0.1
1,193,499 - HMPREF1058_RS14470 0.48 +0.6
1,193,501 + HMPREF1058_RS14470 0.48 -0.4
1,193,502 - HMPREF1058_RS14470 0.48 -0.5
1,193,514 - HMPREF1058_RS14470 0.50 -1.0
1,193,515 + HMPREF1058_RS14470 0.50 +0.6
1,193,535 + HMPREF1058_RS14470 0.52 -0.9
1,193,537 + HMPREF1058_RS14470 0.52 +0.3
1,193,537 + HMPREF1058_RS14470 0.52 -0.5
1,193,537 + HMPREF1058_RS14470 0.52 -0.1
1,193,548 - HMPREF1058_RS14470 0.53 -1.1
1,193,563 - HMPREF1058_RS14470 0.54 -0.4
1,193,600 - HMPREF1058_RS14470 0.58 -0.9
1,193,631 + HMPREF1058_RS14470 0.61 -0.4
1,193,631 + HMPREF1058_RS14470 0.61 -0.2
1,193,632 - HMPREF1058_RS14470 0.61 -0.1
1,193,632 - HMPREF1058_RS14470 0.61 -0.3
1,193,748 - HMPREF1058_RS14470 0.73 +0.8
1,193,769 + HMPREF1058_RS14470 0.75 -0.2
1,193,804 - HMPREF1058_RS14470 0.79 +0.2
1,193,871 + HMPREF1058_RS14470 0.85 -0.0
1,193,885 + HMPREF1058_RS14470 0.87 -0.2
1,193,886 - HMPREF1058_RS14470 0.87 -0.6
1,193,886 - HMPREF1058_RS14470 0.87 -0.4
1,193,920 + +0.2
1,193,921 - +0.2
1,193,986 + -0.9
1,193,986 + -0.0
1,193,986 + +1.2
1,193,995 + -0.1
1,194,003 + -0.6
1,194,021 - -0.4
1,194,061 - -0.4
1,194,061 - +0.2
1,194,061 - +0.9
1,194,138 - HMPREF1058_RS14465 0.13 +0.2
1,194,232 + HMPREF1058_RS14465 0.24 +0.2
1,194,233 - HMPREF1058_RS14465 0.24 -0.4
1,194,308 + HMPREF1058_RS14465 0.33 -1.6
1,194,309 - HMPREF1058_RS14465 0.33 -0.9
1,194,314 - HMPREF1058_RS14465 0.34 +2.2
1,194,404 - HMPREF1058_RS14465 0.44 -1.6
1,194,404 - HMPREF1058_RS14465 0.44 -1.6
1,194,406 - HMPREF1058_RS14465 0.44 -0.4
1,194,435 + HMPREF1058_RS14465 0.48 -2.1
1,194,521 + HMPREF1058_RS14465 0.58 -1.5
1,194,595 + HMPREF1058_RS14465 0.66 -0.4
1,194,772 + HMPREF1058_RS14465 0.87 +1.2
1,194,847 + -0.4
1,194,877 - +0.6
1,194,899 - -1.7
1,194,932 - -0.7
1,194,977 - -0.3
1,194,997 - +0.3
1,195,036 + -0.2
1,195,036 + -0.2
1,195,037 - -2.3
1,195,042 - -0.3
1,195,049 - +2.9
1,195,077 + +1.8
1,195,095 - +0.4
1,195,116 + -2.6
1,195,121 - +1.0
1,195,133 - +0.2
1,195,200 - -0.4
1,195,248 + +0.8
1,195,248 + -3.2
1,195,249 - -0.5
1,195,249 - -0.1
1,195,251 - -0.2
1,195,251 - +1.2
1,195,252 + -1.7
1,195,252 + -1.0
1,195,253 - +0.5
1,195,253 - -0.4
1,195,270 + +1.4
1,195,286 - +0.7
1,195,366 + -0.7
1,195,366 + -1.7
1,195,367 - +2.8
1,195,380 + -0.2
1,195,380 + +1.8
1,195,381 - +0.5
1,195,421 + +0.0
1,195,476 - HMPREF1058_RS14460 0.13 -0.7
1,195,499 + HMPREF1058_RS14460 0.15 +1.3
1,195,586 - HMPREF1058_RS14460 0.20 -0.5
1,195,603 + HMPREF1058_RS14460 0.21 +0.0
1,195,608 - HMPREF1058_RS14460 0.21 -0.1
1,195,627 + HMPREF1058_RS14460 0.23 -0.2
1,195,651 + HMPREF1058_RS14460 0.24 -1.4
1,195,652 - HMPREF1058_RS14460 0.24 +0.0
1,195,661 + HMPREF1058_RS14460 0.25 -1.5
1,195,722 - HMPREF1058_RS14460 0.29 +0.2
1,195,799 + HMPREF1058_RS14460 0.33 +2.2

Or see this region's nucleotide sequence