Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13510

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride 10 mM (C)
1,459,438	+		HMPREF1058_RS13515	0.37	+0.7
1,459,487	+		HMPREF1058_RS13515	0.40	+0.3
1,459,498	+		HMPREF1058_RS13515	0.41	+1.3
1,459,631	+		HMPREF1058_RS13515	0.50	-0.3
1,459,631	+		HMPREF1058_RS13515	0.50	+0.0
1,459,634	-		HMPREF1058_RS13515	0.50	-1.0
1,459,783	-		HMPREF1058_RS13515	0.60	-0.2
1,459,783	-		HMPREF1058_RS13515	0.60	-0.6
1,459,814	+		HMPREF1058_RS13515	0.62	-0.2
1,459,816	+		HMPREF1058_RS13515	0.62	-0.2
1,459,828	-		HMPREF1058_RS13515	0.63	-0.9
1,459,878	+		HMPREF1058_RS13515	0.66	-0.5
1,459,879	-		HMPREF1058_RS13515	0.66	-0.2
1,459,880	+		HMPREF1058_RS13515	0.66	-0.4
1,459,880	+		HMPREF1058_RS13515	0.66	-0.4
1,459,881	-		HMPREF1058_RS13515	0.67	+0.4
1,459,888	+		HMPREF1058_RS13515	0.67	+0.2
1,459,904	+		HMPREF1058_RS13515	0.68	-0.0
1,459,924	+		HMPREF1058_RS13515	0.69	-0.4
1,459,924	+		HMPREF1058_RS13515	0.69	-0.4
1,459,937	-		HMPREF1058_RS13515	0.70	-0.3
1,459,975	+		HMPREF1058_RS13515	0.73	+0.6
1,459,976	-		HMPREF1058_RS13515	0.73	-0.8
1,460,033	+		HMPREF1058_RS13515	0.77	+0.6
1,460,039	+		HMPREF1058_RS13515	0.77	-1.2
1,460,057	-		HMPREF1058_RS13515	0.78	+0.0
1,460,113	-		HMPREF1058_RS13515	0.82	+0.1
1,460,115	+		HMPREF1058_RS13515	0.82	-0.3
1,460,123	-		HMPREF1058_RS13515	0.83	-0.5
1,460,123	-		HMPREF1058_RS13515	0.83	-1.0
1,460,123	-		HMPREF1058_RS13515	0.83	+0.8
1,460,147	-		HMPREF1058_RS13515	0.85	-1.1
1,460,155	-		HMPREF1058_RS13515	0.85	-0.2
1,460,158	+		HMPREF1058_RS13515	0.85	+0.1
1,460,158	+		HMPREF1058_RS13515	0.85	-0.1
1,460,179	+		HMPREF1058_RS13515	0.87	+0.7
1,460,181	+		HMPREF1058_RS13515	0.87	-3.6
1,460,181	+		HMPREF1058_RS13515	0.87	-0.2
1,460,181	+		HMPREF1058_RS13515	0.87	-2.6
1,460,312	+				-0.4
1,460,313	-				+0.0
1,460,395	+				-0.1
1,460,477	-				-0.7
1,460,712	+				+0.2
1,460,713	-				+0.4
1,460,835	-		HMPREF1058_RS13510	0.12	-1.0
1,460,884	-		HMPREF1058_RS13510	0.14	+2.2
1,460,902	+		HMPREF1058_RS13510	0.14	-0.9
1,460,902	+		HMPREF1058_RS13510	0.14	-1.4
1,460,951	+		HMPREF1058_RS13510	0.16	-0.6
1,460,951	+		HMPREF1058_RS13510	0.16	-1.7
1,461,012	+		HMPREF1058_RS13510	0.18	-0.0
1,461,012	+				-0.1
1,461,013	-		HMPREF1058_RS13510	0.18	-1.2
1,461,013	-		HMPREF1058_RS13510	0.18	-0.0
1,461,085	-		HMPREF1058_RS13510	0.20	-0.7
1,461,166	-		HMPREF1058_RS13510	0.22	-0.4
1,461,166	-		HMPREF1058_RS13510	0.22	-2.2
1,461,274	+		HMPREF1058_RS13510	0.25	-1.0
1,461,281	-		HMPREF1058_RS13510	0.26	-0.6
1,461,344	+		HMPREF1058_RS13510	0.28	-0.9
1,461,345	-		HMPREF1058_RS13510	0.28	-1.8
1,461,346	+		HMPREF1058_RS13510	0.28	-0.9
1,461,346	+		HMPREF1058_RS13510	0.28	-0.8
1,461,347	-		HMPREF1058_RS13510	0.28	-1.0
1,461,406	-		HMPREF1058_RS13510	0.29	-1.2
1,461,464	-		HMPREF1058_RS13510	0.31	-0.7
1,461,473	-		HMPREF1058_RS13510	0.31	-1.5
1,461,552	+		HMPREF1058_RS13510	0.34	+1.6
1,461,566	+		HMPREF1058_RS13510	0.34	-0.6
1,461,699	+		HMPREF1058_RS13510	0.38	-1.0
1,461,797	+		HMPREF1058_RS13510	0.41	-1.1
1,461,797	+		HMPREF1058_RS13510	0.41	-0.8
1,461,813	+		HMPREF1058_RS13510	0.42	-0.8
1,461,813	+		HMPREF1058_RS13510	0.42	-0.1
1,461,816	+		HMPREF1058_RS13510	0.42	-0.1
1,461,835	+		HMPREF1058_RS13510	0.42	-1.4
1,461,915	+		HMPREF1058_RS13510	0.45	-0.6
1,461,927	+		HMPREF1058_RS13510	0.45	-0.5
1,461,928	-		HMPREF1058_RS13510	0.45	-0.4
1,461,928	-		HMPREF1058_RS13510	0.45	+1.0
1,461,984	-		HMPREF1058_RS13510	0.47	-0.9
1,462,054	+		HMPREF1058_RS13510	0.49	-1.9
1,462,055	-		HMPREF1058_RS13510	0.49	-0.1
1,462,055	-		HMPREF1058_RS13510	0.49	-0.9
1,462,055	-		HMPREF1058_RS13510	0.49	-0.7
1,462,055	-		HMPREF1058_RS13510	0.49	+0.0
1,462,055	-		HMPREF1058_RS13510	0.49	-1.3
1,462,106	+		HMPREF1058_RS13510	0.50	-0.6
1,462,106	+		HMPREF1058_RS13510	0.50	-0.9
1,462,106	+		HMPREF1058_RS13510	0.50	-1.0
1,462,108	+		HMPREF1058_RS13510	0.50	-1.6
1,462,109	-		HMPREF1058_RS13510	0.51	+0.6
1,462,109	-		HMPREF1058_RS13510	0.51	+0.3
1,462,182	-		HMPREF1058_RS13510	0.53	-0.8
1,462,208	+		HMPREF1058_RS13510	0.54	+2.2
1,462,233	-		HMPREF1058_RS13510	0.54	-1.1
1,462,314	-		HMPREF1058_RS13510	0.57	-0.5
1,462,498	+		HMPREF1058_RS13510	0.62	+0.3
1,462,557	+		HMPREF1058_RS13510	0.64	-0.2
1,462,558	-		HMPREF1058_RS13510	0.64	+0.4
1,462,558	-		HMPREF1058_RS13510	0.64	-1.5
1,462,558	-		HMPREF1058_RS13510	0.64	-1.2
1,462,576	-		HMPREF1058_RS13510	0.65	-1.0
1,462,576	-		HMPREF1058_RS13510	0.65	-1.7
1,462,577	+		HMPREF1058_RS13510	0.65	-1.3
1,462,577	+				-1.3
1,462,578	-		HMPREF1058_RS13510	0.65	+2.2
1,462,578	-		HMPREF1058_RS13510	0.65	-2.2
1,462,578	-		HMPREF1058_RS13510	0.65	-1.2
1,462,578	-		HMPREF1058_RS13510	0.65	-2.3
1,462,578	-		HMPREF1058_RS13510	0.65	+0.6
1,462,580	-		HMPREF1058_RS13510	0.65	-1.9
1,462,664	-		HMPREF1058_RS13510	0.67	-0.7
1,462,731	-		HMPREF1058_RS13510	0.69	-0.3
1,462,731	-		HMPREF1058_RS13510	0.69	-1.2
1,462,920	+		HMPREF1058_RS13510	0.75	-1.7
1,462,927	+		HMPREF1058_RS13510	0.75	-0.2
1,462,927	+		HMPREF1058_RS13510	0.75	-1.0
1,462,927	+		HMPREF1058_RS13510	0.75	-0.0
1,462,928	-		HMPREF1058_RS13510	0.75	-0.1
1,462,928	-		HMPREF1058_RS13510	0.75	-1.6
1,462,928	-		HMPREF1058_RS13510	0.75	-0.3
1,462,928	-		HMPREF1058_RS13510	0.75	-0.7
1,462,928	-		HMPREF1058_RS13510	0.75	-1.1
1,462,930	-		HMPREF1058_RS13510	0.75	+0.5
1,462,932	-		HMPREF1058_RS13510	0.75	+1.2
1,462,957	+		HMPREF1058_RS13510	0.76	-0.3
1,462,986	+		HMPREF1058_RS13510	0.77	-1.5
1,463,073	-		HMPREF1058_RS13510	0.80	-1.1
1,463,094	+		HMPREF1058_RS13510	0.80	-0.5
1,463,176	-		HMPREF1058_RS13510	0.83	-0.3
1,463,227	+		HMPREF1058_RS13510	0.84	+0.6
1,463,254	+		HMPREF1058_RS13510	0.85	-1.0
1,463,287	+		HMPREF1058_RS13510	0.86	-0.1
1,463,291	+		HMPREF1058_RS13510	0.86	-1.4
1,463,297	+		HMPREF1058_RS13510	0.86	-0.6
1,463,301	+		HMPREF1058_RS13510	0.86	-1.8
1,463,302	-		HMPREF1058_RS13510	0.86	+0.1
1,463,323	+		HMPREF1058_RS13510	0.87	-1.5
1,463,324	-		HMPREF1058_RS13510	0.87	+2.0
1,463,369	+		HMPREF1058_RS13510	0.88	-0.1
1,463,370	-		HMPREF1058_RS13510	0.88	-0.0
1,463,436	+				-1.6
1,463,493	+				+1.2
1,463,493	+				+1.7
1,463,537	-				-1.2
1,463,537	-				-2.1
1,463,582	+				-0.4
1,463,583	-				-0.7
1,463,583	-				+3.2
1,463,629	+				-0.9
1,463,630	-				-0.9
1,463,704	+				-0.9
1,463,706	+				+0.3
1,463,706	+				-2.6
1,463,706	+				-1.1
1,463,707	-				+0.2
1,463,709	-				-1.0
1,463,729	+				-1.1
1,463,730	-				-1.6
1,463,732	+				-0.5
1,463,775	-				+0.3
1,463,796	+				+1.0
1,463,803	-				+0.2
1,463,943	+		HMPREF1058_RS13505	0.23	-0.8
1,463,944	-		HMPREF1058_RS13505	0.23	-1.1
1,463,944	-		HMPREF1058_RS13505	0.23	+0.7
1,464,031	+		HMPREF1058_RS13505	0.34	-0.7
1,464,032	-				+1.0
1,464,039	+		HMPREF1058_RS13505	0.35	-1.4
1,464,053	+		HMPREF1058_RS13505	0.37	+0.3
1,464,055	+		HMPREF1058_RS13505	0.38	-1.0
1,464,056	-		HMPREF1058_RS13505	0.38	+0.0
1,464,056	-		HMPREF1058_RS13505	0.38	+0.2
1,464,062	+		HMPREF1058_RS13505	0.39	-0.8
1,464,062	+		HMPREF1058_RS13505	0.39	+0.3
1,464,074	+		HMPREF1058_RS13505	0.40	+0.2
1,464,075	-		HMPREF1058_RS13505	0.40	-0.1
1,464,077	-		HMPREF1058_RS13505	0.41	-0.4
1,464,095	-		HMPREF1058_RS13505	0.43	+0.3
1,464,120	-		HMPREF1058_RS13505	0.46	-1.0
1,464,149	-		HMPREF1058_RS13505	0.50	+0.1
1,464,150	+		HMPREF1058_RS13505	0.50	-0.3
1,464,176	+		HMPREF1058_RS13505	0.54	+0.2
1,464,195	+		HMPREF1058_RS13505	0.57	-0.1
1,464,198	+		HMPREF1058_RS13505	0.57	-1.3
1,464,198	+		HMPREF1058_RS13505	0.57	-0.3
1,464,198	+		HMPREF1058_RS13505	0.57	+0.0
1,464,198	+		HMPREF1058_RS13505	0.57	-1.6
1,464,202	-		HMPREF1058_RS13505	0.57	-0.8
1,464,209	+		HMPREF1058_RS13505	0.58	-0.1
1,464,224	-		HMPREF1058_RS13505	0.60	+0.0
1,464,224	-		HMPREF1058_RS13505	0.60	+0.4
1,464,227	+		HMPREF1058_RS13505	0.61	-2.4
1,464,227	+		HMPREF1058_RS13505	0.61	-0.4
1,464,227	+		HMPREF1058_RS13505	0.61	-0.1
1,464,228	-		HMPREF1058_RS13505	0.61	-0.0
1,464,228	-		HMPREF1058_RS13505	0.61	-0.0
1,464,259	-		HMPREF1058_RS13505	0.65	+0.6
1,464,261	-		HMPREF1058_RS13505	0.65	-0.7
1,464,273	+		HMPREF1058_RS13505	0.67	-0.1
1,464,322	-		HMPREF1058_RS13505	0.74	+0.1
1,464,349	-		HMPREF1058_RS13505	0.77	+0.4
1,464,349	-		HMPREF1058_RS13505	0.77	+0.3
1,464,484	-				+0.5
1,464,494	-				+0.4
1,464,580	-				+0.2
1,464,598	+				-0.7
1,464,622	+				-0.1
1,464,623	-				-0.1
1,464,654	+				-0.8
1,464,656	+				-0.4
1,464,657	-				+0.2
1,464,682	+				+0.1
1,464,686	-				-0.1
1,464,705	+				+0.2
1,464,738	+				-0.3