Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12680 and HMPREF1058_RS12675 are separated by 176 nucleotides HMPREF1058_RS12675 and HMPREF1058_RS12670 are separated by 73 nucleotides HMPREF1058_RS12670 and HMPREF1058_RS12665 are separated by 104 nucleotides
HMPREF1058_RS12680: HMPREF1058_RS12680 - acetyl-CoA carboxylase biotin carboxylase subunit, at 57,416 to 58,927
_RS12680
HMPREF1058_RS12675: HMPREF1058_RS12675 - DUF488 family protein, at 59,104 to 59,460
_RS12675
HMPREF1058_RS12670: HMPREF1058_RS12670 - N-acetyltransferase, at 59,534 to 60,019
_RS12670
HMPREF1058_RS12665: HMPREF1058_RS12665 - GNAT family N-acetyltransferase, at 60,124 to 60,555
_RS12665
Position (kb) 59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 58.732 kb on + strand, within HMPREF1058_RS12680 at 58.732 kb on + strand, within HMPREF1058_RS12680 at 58.733 kb on - strand, within HMPREF1058_RS12680 at 58.735 kb on + strand, within HMPREF1058_RS12680 at 58.736 kb on - strand, within HMPREF1058_RS12680 at 58.739 kb on + strand, within HMPREF1058_RS12680 at 58.749 kb on + strand, within HMPREF1058_RS12680 at 58.797 kb on + strand at 58.797 kb on + strand at 59.017 kb on + strand at 59.256 kb on + strand, within HMPREF1058_RS12675 at 59.257 kb on - strand, within HMPREF1058_RS12675 at 59.257 kb on - strand, within HMPREF1058_RS12675 at 59.449 kb on + strand at 59.482 kb on + strand at 59.491 kb on - strand at 59.491 kb on - strand at 59.562 kb on - strand at 59.769 kb on + strand, within HMPREF1058_RS12670 at 59.769 kb on + strand, within HMPREF1058_RS12670 at 59.788 kb on + strand, within HMPREF1058_RS12670 at 59.788 kb on + strand, within HMPREF1058_RS12670 at 59.789 kb on - strand, within HMPREF1058_RS12670 at 59.909 kb on - strand, within HMPREF1058_RS12670 at 59.961 kb on + strand, within HMPREF1058_RS12670 at 59.971 kb on - strand at 60.143 kb on + strand at 60.177 kb on - strand, within HMPREF1058_RS12665 at 60.312 kb on - strand, within HMPREF1058_RS12665 at 60.443 kb on + strand, within HMPREF1058_RS12665 at 60.443 kb on + strand, within HMPREF1058_RS12665 at 60.450 kb on + strand, within HMPREF1058_RS12665 at 60.450 kb on + strand, within HMPREF1058_RS12665 at 60.451 kb on - strand, within HMPREF1058_RS12665 at 60.453 kb on + strand, within HMPREF1058_RS12665 at 60.454 kb on - strand, within HMPREF1058_RS12665
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 58,732 + HMPREF1058_RS12680 0.87 -0.3 58,732 + HMPREF1058_RS12680 0.87 -1.2 58,733 - HMPREF1058_RS12680 0.87 -0.8 58,735 + HMPREF1058_RS12680 0.87 -0.6 58,736 - HMPREF1058_RS12680 0.87 -0.5 58,739 + HMPREF1058_RS12680 0.88 -0.3 58,749 + HMPREF1058_RS12680 0.88 -0.5 58,797 + +0.1 58,797 + +1.3 59,017 + -0.4 59,256 + HMPREF1058_RS12675 0.43 -1.2 59,257 - HMPREF1058_RS12675 0.43 -1.3 59,257 - HMPREF1058_RS12675 0.43 -1.4 59,449 + +1.1 59,482 + -0.4 59,491 - +0.2 59,491 - +0.4 59,562 - -0.6 59,769 + HMPREF1058_RS12670 0.48 +0.0 59,769 + HMPREF1058_RS12670 0.48 +0.9 59,788 + HMPREF1058_RS12670 0.52 +0.4 59,788 + HMPREF1058_RS12670 0.52 -0.7 59,789 - HMPREF1058_RS12670 0.52 +1.6 59,909 - HMPREF1058_RS12670 0.77 -0.7 59,961 + HMPREF1058_RS12670 0.88 -0.2 59,971 - -1.6 60,143 + +0.8 60,177 - HMPREF1058_RS12665 0.12 +0.7 60,312 - HMPREF1058_RS12665 0.44 -0.9 60,443 + HMPREF1058_RS12665 0.74 -0.1 60,443 + HMPREF1058_RS12665 0.74 -0.0 60,450 + HMPREF1058_RS12665 0.75 +0.1 60,450 + HMPREF1058_RS12665 0.75 +0.5 60,451 - HMPREF1058_RS12665 0.76 -0.2 60,453 + HMPREF1058_RS12665 0.76 -1.6 60,454 - HMPREF1058_RS12665 0.76 -2.6
Or see this region's nucleotide sequence