Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11945 and HMPREF1058_RS11940 are separated by 378 nucleotides HMPREF1058_RS11940 and HMPREF1058_RS11935 overlap by 1 nucleotides HMPREF1058_RS11935 and HMPREF1058_RS11930 are separated by 172 nucleotides
HMPREF1058_RS11945: HMPREF1058_RS11945 - bifunctional riboflavin kinase/FAD synthetase, at 240,140 to 241,060
_RS11945
HMPREF1058_RS11940: HMPREF1058_RS11940 - DUF3836 domain-containing protein, at 241,439 to 241,861
_RS11940
HMPREF1058_RS11935: HMPREF1058_RS11935 - hypothetical protein, at 241,861 to 242,160
_RS11935
HMPREF1058_RS11930: HMPREF1058_RS11930 - CPBP family intramembrane metalloprotease, at 242,333 to 243,163
_RS11930
Position (kb) 241
242 Strain fitness (log2 ratio) -2
-1
0
1 at 241.058 kb on + strand at 241.108 kb on - strand at 241.121 kb on + strand at 241.157 kb on + strand at 241.158 kb on - strand at 241.247 kb on - strand at 241.434 kb on + strand at 241.486 kb on - strand, within HMPREF1058_RS11940 at 241.502 kb on - strand, within HMPREF1058_RS11940 at 241.538 kb on + strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.539 kb on - strand, within HMPREF1058_RS11940 at 241.574 kb on + strand, within HMPREF1058_RS11940 at 241.804 kb on + strand, within HMPREF1058_RS11940 at 241.930 kb on + strand, within HMPREF1058_RS11935 at 241.934 kb on + strand, within HMPREF1058_RS11935 at 241.935 kb on - strand, within HMPREF1058_RS11935 at 241.967 kb on + strand, within HMPREF1058_RS11935 at 241.997 kb on + strand, within HMPREF1058_RS11935 at 242.076 kb on + strand, within HMPREF1058_RS11935 at 242.108 kb on + strand, within HMPREF1058_RS11935 at 242.119 kb on + strand, within HMPREF1058_RS11935 at 242.120 kb on - strand, within HMPREF1058_RS11935 at 242.329 kb on + strand at 242.329 kb on + strand at 242.348 kb on - strand at 242.355 kb on + strand at 242.355 kb on + strand at 242.467 kb on - strand, within HMPREF1058_RS11930 at 242.477 kb on - strand, within HMPREF1058_RS11930 at 242.545 kb on + strand, within HMPREF1058_RS11930 at 242.584 kb on - strand, within HMPREF1058_RS11930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 241,058 + +1.6 241,108 - +0.6 241,121 + +0.1 241,157 + -1.8 241,158 - -1.0 241,247 - +0.9 241,434 + +0.1 241,486 - HMPREF1058_RS11940 0.11 -0.4 241,502 - HMPREF1058_RS11940 0.15 +1.1 241,538 + HMPREF1058_RS11940 0.23 -0.7 241,539 - HMPREF1058_RS11940 0.24 -0.4 241,539 - HMPREF1058_RS11940 0.24 -2.1 241,574 + HMPREF1058_RS11940 0.32 -1.3 241,804 + HMPREF1058_RS11940 0.86 -1.8 241,930 + HMPREF1058_RS11935 0.23 +0.1 241,934 + HMPREF1058_RS11935 0.24 +0.4 241,935 - HMPREF1058_RS11935 0.25 -0.1 241,967 + HMPREF1058_RS11935 0.35 -0.3 241,997 + HMPREF1058_RS11935 0.45 +0.3 242,076 + HMPREF1058_RS11935 0.72 +1.1 242,108 + HMPREF1058_RS11935 0.82 -0.1 242,119 + HMPREF1058_RS11935 0.86 -0.4 242,120 - HMPREF1058_RS11935 0.86 +1.7 242,329 + +0.2 242,329 + -0.2 242,348 - +0.3 242,355 + +0.6 242,355 + +0.6 242,467 - HMPREF1058_RS11930 0.16 +0.3 242,477 - HMPREF1058_RS11930 0.17 -1.5 242,545 + HMPREF1058_RS11930 0.26 +1.3 242,584 - HMPREF1058_RS11930 0.30 -0.9
Or see this region's nucleotide sequence