Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11925 and HMPREF1058_RS11920 are separated by 16 nucleotides HMPREF1058_RS11920 and HMPREF1058_RS11915 are separated by 271 nucleotides HMPREF1058_RS11915 and HMPREF1058_RS11910 are separated by 261 nucleotides
HMPREF1058_RS11925: HMPREF1058_RS11925 - DUF2975 domain-containing protein, at 243,172 to 243,801
_RS11925
HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465
_RS11920
HMPREF1058_RS11915: HMPREF1058_RS11915 - helix-turn-helix transcriptional regulator, at 244,737 to 244,949
_RS11915
HMPREF1058_RS11910: HMPREF1058_RS11910 - DEAD/DEAH box helicase, at 245,211 to 247,085
_RS11910
Position (kb) 244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.853 kb on + strand at 243.856 kb on - strand at 243.931 kb on + strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.948 kb on + strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.950 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 244.025 kb on - strand, within HMPREF1058_RS11920 at 244.071 kb on - strand, within HMPREF1058_RS11920 at 244.087 kb on - strand, within HMPREF1058_RS11920 at 244.215 kb on + strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.285 kb on - strand at 244.358 kb on + strand, within HMPREF1058_RS11920 at 244.359 kb on - strand, within HMPREF1058_RS11920 at 244.544 kb on + strand at 244.556 kb on - strand at 244.569 kb on + strand at 244.607 kb on - strand at 244.651 kb on - strand at 244.661 kb on + strand at 244.661 kb on + strand at 244.746 kb on - strand at 244.901 kb on - strand, within HMPREF1058_RS11915 at 244.950 kb on + strand at 244.950 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.966 kb on + strand at 244.967 kb on - strand at 244.967 kb on - strand at 244.967 kb on - strand at 244.996 kb on + strand at 245.042 kb on + strand at 245.064 kb on + strand at 245.067 kb on - strand at 245.121 kb on + strand at 245.159 kb on - strand at 245.159 kb on - strand at 245.161 kb on - strand at 245.252 kb on - strand at 245.275 kb on - strand at 245.305 kb on + strand at 245.314 kb on - strand at 245.338 kb on + strand at 245.500 kb on - strand, within HMPREF1058_RS11910 at 245.528 kb on - strand, within HMPREF1058_RS11910 at 245.557 kb on + strand, within HMPREF1058_RS11910 at 245.579 kb on - strand, within HMPREF1058_RS11910 at 245.583 kb on - strand, within HMPREF1058_RS11910 at 245.620 kb on + strand, within HMPREF1058_RS11910 at 245.621 kb on - strand at 245.651 kb on + strand, within HMPREF1058_RS11910 at 245.663 kb on - strand, within HMPREF1058_RS11910 at 245.710 kb on + strand, within HMPREF1058_RS11910 at 245.875 kb on - strand, within HMPREF1058_RS11910 at 245.898 kb on + strand, within HMPREF1058_RS11910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 243,853 + -0.7 243,856 - -0.0 243,931 + HMPREF1058_RS11920 0.17 -0.1 243,932 - HMPREF1058_RS11920 0.18 -0.8 243,932 - HMPREF1058_RS11920 0.18 +0.3 243,948 + HMPREF1058_RS11920 0.20 -0.3 243,949 - HMPREF1058_RS11920 0.20 -1.3 243,949 - HMPREF1058_RS11920 0.20 -0.0 243,950 + HMPREF1058_RS11920 0.20 +0.1 243,970 + HMPREF1058_RS11920 0.23 -0.2 243,970 + HMPREF1058_RS11920 0.23 -0.7 244,025 - HMPREF1058_RS11920 0.32 +1.6 244,071 - HMPREF1058_RS11920 0.39 +1.3 244,087 - HMPREF1058_RS11920 0.42 -0.1 244,215 + HMPREF1058_RS11920 0.61 -0.3 244,220 - HMPREF1058_RS11920 0.62 -0.4 244,220 - HMPREF1058_RS11920 0.62 +2.1 244,257 - HMPREF1058_RS11920 0.68 -0.6 244,257 - HMPREF1058_RS11920 0.68 -0.1 244,257 - HMPREF1058_RS11920 0.68 -1.2 244,285 - +1.1 244,358 + HMPREF1058_RS11920 0.83 +0.4 244,359 - HMPREF1058_RS11920 0.83 -0.9 244,544 + -1.4 244,556 - -0.2 244,569 + -0.5 244,607 - -1.0 244,651 - +0.1 244,661 + +2.2 244,661 + +1.2 244,746 - -1.3 244,901 - HMPREF1058_RS11915 0.77 -0.8 244,950 + -0.8 244,950 + -0.5 244,966 + +0.8 244,966 + -1.4 244,966 + +0.3 244,966 + -0.0 244,967 - +0.2 244,967 - -1.8 244,967 - -0.4 244,996 + +1.2 245,042 + +0.7 245,064 + -1.4 245,067 - -0.1 245,121 + -0.4 245,159 - -0.7 245,159 - +1.2 245,161 - +0.2 245,252 - +0.7 245,275 - +0.2 245,305 + -2.1 245,314 - -0.5 245,338 + +1.6 245,500 - HMPREF1058_RS11910 0.15 +1.0 245,528 - HMPREF1058_RS11910 0.17 -2.4 245,557 + HMPREF1058_RS11910 0.18 -1.1 245,579 - HMPREF1058_RS11910 0.20 +0.1 245,583 - HMPREF1058_RS11910 0.20 -0.4 245,620 + HMPREF1058_RS11910 0.22 -0.3 245,621 - -1.1 245,651 + HMPREF1058_RS11910 0.23 +0.2 245,663 - HMPREF1058_RS11910 0.24 -1.0 245,710 + HMPREF1058_RS11910 0.27 +0.1 245,875 - HMPREF1058_RS11910 0.35 +1.0 245,898 + HMPREF1058_RS11910 0.37 +2.3
Or see this region's nucleotide sequence