Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11565

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11570 and HMPREF1058_RS11565 are separated by 2 nucleotidesHMPREF1058_RS11565 and HMPREF1058_RS11560 are separated by 23 nucleotides HMPREF1058_RS11570: HMPREF1058_RS11570 - L,D-transpeptidase, at 348,358 to 349,377 _RS11570 HMPREF1058_RS11565: HMPREF1058_RS11565 - murein L,D-transpeptidase catalytic domain family protein, at 349,380 to 350,177 _RS11565 HMPREF1058_RS11560: HMPREF1058_RS11560 - DNA damage-inducible protein D, at 350,201 to 351,022 _RS11560 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1at 348.380 kb on - strandat 348.380 kb on - strandat 348.383 kb on + strandat 348.383 kb on + strandat 348.550 kb on - strand, within HMPREF1058_RS11570at 348.550 kb on - strand, within HMPREF1058_RS11570at 348.555 kb on + strand, within HMPREF1058_RS11570at 348.571 kb on + strand, within HMPREF1058_RS11570at 348.572 kb on - strand, within HMPREF1058_RS11570at 348.736 kb on + strand, within HMPREF1058_RS11570at 348.737 kb on - strand, within HMPREF1058_RS11570at 348.737 kb on - strand, within HMPREF1058_RS11570at 348.882 kb on - strand, within HMPREF1058_RS11570at 348.925 kb on + strand, within HMPREF1058_RS11570at 348.926 kb on - strand, within HMPREF1058_RS11570at 348.950 kb on + strand, within HMPREF1058_RS11570at 348.950 kb on + strand, within HMPREF1058_RS11570at 348.950 kb on + strand, within HMPREF1058_RS11570at 348.951 kb on - strand, within HMPREF1058_RS11570at 348.995 kb on + strand, within HMPREF1058_RS11570at 348.995 kb on + strand, within HMPREF1058_RS11570at 348.995 kb on + strand, within HMPREF1058_RS11570at 349.035 kb on - strand, within HMPREF1058_RS11570at 349.038 kb on + strand, within HMPREF1058_RS11570at 349.039 kb on - strand, within HMPREF1058_RS11570at 349.207 kb on + strand, within HMPREF1058_RS11570at 349.210 kb on - strand, within HMPREF1058_RS11570at 349.220 kb on + strand, within HMPREF1058_RS11570at 349.250 kb on + strand, within HMPREF1058_RS11570at 349.256 kb on - strand, within HMPREF1058_RS11570at 349.262 kb on - strand, within HMPREF1058_RS11570at 349.263 kb on + strand, within HMPREF1058_RS11570at 349.290 kb on + strandat 349.291 kb on - strandat 349.291 kb on - strandat 349.291 kb on - strandat 349.291 kb on - strandat 349.291 kb on - strandat 349.291 kb on - strandat 349.362 kb on - strandat 349.362 kb on - strandat 349.421 kb on + strandat 349.618 kb on - strand, within HMPREF1058_RS11565at 349.726 kb on + strand, within HMPREF1058_RS11565at 349.770 kb on + strand, within HMPREF1058_RS11565at 349.770 kb on + strand, within HMPREF1058_RS11565at 349.771 kb on - strand, within HMPREF1058_RS11565at 349.771 kb on - strand, within HMPREF1058_RS11565at 349.775 kb on + strand, within HMPREF1058_RS11565at 349.775 kb on + strand, within HMPREF1058_RS11565at 349.776 kb on - strand, within HMPREF1058_RS11565at 349.776 kb on - strand, within HMPREF1058_RS11565at 349.824 kb on + strand, within HMPREF1058_RS11565at 349.824 kb on + strand, within HMPREF1058_RS11565at 349.843 kb on - strand, within HMPREF1058_RS11565at 350.061 kb on - strand, within HMPREF1058_RS11565at 350.065 kb on - strand, within HMPREF1058_RS11565at 350.082 kb on + strand, within HMPREF1058_RS11565at 350.082 kb on + strand, within HMPREF1058_RS11565at 350.082 kb on + strand, within HMPREF1058_RS11565at 350.083 kb on - strand, within HMPREF1058_RS11565at 350.083 kb on - strand, within HMPREF1058_RS11565at 350.083 kb on - strand, within HMPREF1058_RS11565at 350.084 kb on + strand, within HMPREF1058_RS11565at 350.085 kb on - strand, within HMPREF1058_RS11565at 350.128 kb on + strandat 350.175 kb on + strandat 350.301 kb on - strand, within HMPREF1058_RS11560at 350.301 kb on - strand, within HMPREF1058_RS11560at 350.335 kb on + strand, within HMPREF1058_RS11560at 350.336 kb on - strand, within HMPREF1058_RS11560at 350.381 kb on + strand, within HMPREF1058_RS11560at 350.381 kb on + strand, within HMPREF1058_RS11560at 350.480 kb on - strand, within HMPREF1058_RS11560at 350.518 kb on + strand, within HMPREF1058_RS11560at 350.518 kb on + strand, within HMPREF1058_RS11560at 350.554 kb on + strand, within HMPREF1058_RS11560at 350.555 kb on - strand, within HMPREF1058_RS11560at 350.635 kb on - strand, within HMPREF1058_RS11560at 350.706 kb on - strand, within HMPREF1058_RS11560at 350.769 kb on + strand, within HMPREF1058_RS11560at 350.778 kb on - strand, within HMPREF1058_RS11560at 350.903 kb on - strand, within HMPREF1058_RS11560at 350.929 kb on - strand, within HMPREF1058_RS11560at 350.929 kb on - strand, within HMPREF1058_RS11560at 350.977 kb on + strandat 350.997 kb on + strandat 350.997 kb on + strandat 350.998 kb on - strandat 351.026 kb on - strandat 351.027 kb on + strandat 351.027 kb on + strandat 351.041 kb on + strandat 351.042 kb on - strandat 351.048 kb on + strandat 351.048 kb on + strandat 351.051 kb on + strandat 351.103 kb on + strandat 351.113 kb on + strandat 351.163 kb on + strandat 351.163 kb on + strandat 351.166 kb on - strandat 351.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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348,380 - -0.9
348,380 - +0.7
348,383 + -0.4
348,383 + -0.5
348,550 - HMPREF1058_RS11570 0.19 +0.8
348,550 - HMPREF1058_RS11570 0.19 -0.9
348,555 + HMPREF1058_RS11570 0.19 -0.4
348,571 + HMPREF1058_RS11570 0.21 +0.0
348,572 - HMPREF1058_RS11570 0.21 -0.8
348,736 + HMPREF1058_RS11570 0.37 -0.9
348,737 - HMPREF1058_RS11570 0.37 -0.2
348,737 - HMPREF1058_RS11570 0.37 +0.0
348,882 - HMPREF1058_RS11570 0.51 -2.0
348,925 + HMPREF1058_RS11570 0.56 -0.1
348,926 - HMPREF1058_RS11570 0.56 +0.3
348,950 + HMPREF1058_RS11570 0.58 -0.7
348,950 + HMPREF1058_RS11570 0.58 +0.0
348,950 + HMPREF1058_RS11570 0.58 +0.1
348,951 - HMPREF1058_RS11570 0.58 +0.2
348,995 + HMPREF1058_RS11570 0.62 -0.5
348,995 + HMPREF1058_RS11570 0.62 -0.4
348,995 + HMPREF1058_RS11570 0.62 -0.1
349,035 - HMPREF1058_RS11570 0.66 -0.2
349,038 + HMPREF1058_RS11570 0.67 -1.4
349,039 - HMPREF1058_RS11570 0.67 -0.4
349,207 + HMPREF1058_RS11570 0.83 +0.1
349,210 - HMPREF1058_RS11570 0.84 +0.5
349,220 + HMPREF1058_RS11570 0.85 +0.5
349,250 + HMPREF1058_RS11570 0.87 -2.0
349,256 - HMPREF1058_RS11570 0.88 +0.1
349,262 - HMPREF1058_RS11570 0.89 -0.3
349,263 + HMPREF1058_RS11570 0.89 +0.1
349,290 + +1.6
349,291 - -0.8
349,291 - -0.7
349,291 - -0.7
349,291 - -0.5
349,291 - -0.6
349,291 - -0.2
349,362 - -1.0
349,362 - -0.3
349,421 + -1.6
349,618 - HMPREF1058_RS11565 0.30 +0.4
349,726 + HMPREF1058_RS11565 0.43 -0.7
349,770 + HMPREF1058_RS11565 0.49 -1.8
349,770 + HMPREF1058_RS11565 0.49 -1.7
349,771 - HMPREF1058_RS11565 0.49 -0.9
349,771 - HMPREF1058_RS11565 0.49 -2.0
349,775 + HMPREF1058_RS11565 0.49 +0.2
349,775 + HMPREF1058_RS11565 0.49 -1.2
349,776 - HMPREF1058_RS11565 0.50 -1.2
349,776 - HMPREF1058_RS11565 0.50 -1.1
349,824 + HMPREF1058_RS11565 0.56 -1.5
349,824 + HMPREF1058_RS11565 0.56 -0.6
349,843 - HMPREF1058_RS11565 0.58 +0.6
350,061 - HMPREF1058_RS11565 0.85 -1.4
350,065 - HMPREF1058_RS11565 0.86 -1.2
350,082 + HMPREF1058_RS11565 0.88 -0.3
350,082 + HMPREF1058_RS11565 0.88 +0.0
350,082 + HMPREF1058_RS11565 0.88 -0.8
350,083 - HMPREF1058_RS11565 0.88 -0.3
350,083 - HMPREF1058_RS11565 0.88 +0.2
350,083 - HMPREF1058_RS11565 0.88 -0.6
350,084 + HMPREF1058_RS11565 0.88 +0.0
350,085 - HMPREF1058_RS11565 0.88 -1.3
350,128 + +0.6
350,175 + -2.3
350,301 - HMPREF1058_RS11560 0.12 -0.8
350,301 - HMPREF1058_RS11560 0.12 +0.1
350,335 + HMPREF1058_RS11560 0.16 -0.3
350,336 - HMPREF1058_RS11560 0.16 +0.6
350,381 + HMPREF1058_RS11560 0.22 -0.0
350,381 + HMPREF1058_RS11560 0.22 +0.0
350,480 - HMPREF1058_RS11560 0.34 +0.8
350,518 + HMPREF1058_RS11560 0.39 -0.0
350,518 + HMPREF1058_RS11560 0.39 +0.0
350,554 + HMPREF1058_RS11560 0.43 +0.4
350,555 - HMPREF1058_RS11560 0.43 -1.1
350,635 - HMPREF1058_RS11560 0.53 +0.6
350,706 - HMPREF1058_RS11560 0.61 +0.3
350,769 + HMPREF1058_RS11560 0.69 -0.5
350,778 - HMPREF1058_RS11560 0.70 -0.8
350,903 - HMPREF1058_RS11560 0.85 +1.7
350,929 - HMPREF1058_RS11560 0.89 +0.9
350,929 - HMPREF1058_RS11560 0.89 +0.3
350,977 + +1.3
350,997 + -0.3
350,997 + -0.1
350,998 - +0.3
351,026 - -0.3
351,027 + -1.2
351,027 + -2.4
351,041 + +0.3
351,042 - -0.0
351,048 + -0.2
351,048 + +0.6
351,051 + +0.7
351,103 + -0.0
351,113 + +0.6
351,163 + -0.2
351,163 + -0.2
351,166 - -0.9
351,166 - -0.9

Or see this region's nucleotide sequence