Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11320 and HMPREF1058_RS11315 are separated by 11 nucleotides HMPREF1058_RS11315 and HMPREF1058_RS11310 are separated by 4 nucleotides HMPREF1058_RS11310 and HMPREF1058_RS11305 are separated by 37 nucleotides HMPREF1058_RS11305 and HMPREF1058_RS11300 are separated by 12 nucleotides
HMPREF1058_RS11320: HMPREF1058_RS11320 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 403,615 to 404,670
_RS11320
HMPREF1058_RS11315: HMPREF1058_RS11315 - tRNA pseudouridine(55) synthase TruB, at 404,682 to 405,389
_RS11315
HMPREF1058_RS11310: HMPREF1058_RS11310 - undecaprenyl-diphosphate phosphatase, at 405,394 to 406,194
_RS11310
HMPREF1058_RS11305: HMPREF1058_RS11305 - DUF3098 domain-containing protein, at 406,232 to 406,477
_RS11305
HMPREF1058_RS11300: HMPREF1058_RS11300 - ABC transporter permease, at 406,490 to 407,359
_RS11300
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 404.781 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.081 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.164 kb on - strand, within HMPREF1058_RS11315 at 405.179 kb on - strand, within HMPREF1058_RS11315 at 405.222 kb on - strand, within HMPREF1058_RS11315 at 405.250 kb on - strand at 405.303 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.364 kb on - strand at 405.441 kb on - strand at 405.453 kb on - strand at 405.463 kb on - strand at 405.481 kb on - strand, within HMPREF1058_RS11310 at 405.493 kb on - strand, within HMPREF1058_RS11310 at 405.500 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.554 kb on - strand, within HMPREF1058_RS11310 at 405.556 kb on - strand, within HMPREF1058_RS11310 at 405.622 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 406.016 kb on - strand, within HMPREF1058_RS11310 at 406.019 kb on - strand, within HMPREF1058_RS11310 at 406.030 kb on - strand, within HMPREF1058_RS11310 at 406.088 kb on - strand, within HMPREF1058_RS11310 at 406.200 kb on - strand at 406.478 kb on - strand at 406.486 kb on - strand at 406.486 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.528 kb on - strand at 406.544 kb on - strand at 406.544 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.622 kb on - strand, within HMPREF1058_RS11300 at 406.645 kb on - strand, within HMPREF1058_RS11300 at 406.650 kb on - strand, within HMPREF1058_RS11300 at 406.716 kb on - strand, within HMPREF1058_RS11300 at 406.823 kb on - strand, within HMPREF1058_RS11300 at 406.944 kb on - strand, within HMPREF1058_RS11300 at 407.115 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand at 407.117 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand, within HMPREF1058_RS11300
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 404,781 - HMPREF1058_RS11315 0.14 -0.5 404,995 - HMPREF1058_RS11315 0.44 -0.8 404,995 - HMPREF1058_RS11315 0.44 +0.7 405,000 - HMPREF1058_RS11315 0.45 +0.1 405,000 - HMPREF1058_RS11315 0.45 -0.1 405,081 - HMPREF1058_RS11315 0.56 +0.4 405,099 - HMPREF1058_RS11315 0.59 -0.6 405,099 - HMPREF1058_RS11315 0.59 -1.1 405,099 - HMPREF1058_RS11315 0.59 -0.0 405,106 - HMPREF1058_RS11315 0.60 -0.3 405,106 - HMPREF1058_RS11315 0.60 -0.5 405,164 - HMPREF1058_RS11315 0.68 -0.4 405,179 - HMPREF1058_RS11315 0.70 -0.5 405,222 - HMPREF1058_RS11315 0.76 -0.3 405,250 - -0.9 405,303 - HMPREF1058_RS11315 0.88 -0.3 405,308 - HMPREF1058_RS11315 0.88 -0.4 405,308 - HMPREF1058_RS11315 0.88 -0.4 405,313 - HMPREF1058_RS11315 0.89 +0.3 405,313 - HMPREF1058_RS11315 0.89 +0.1 405,364 - -0.0 405,441 - -1.6 405,453 - -1.2 405,463 - -0.8 405,481 - HMPREF1058_RS11310 0.11 -1.8 405,493 - HMPREF1058_RS11310 0.12 -1.4 405,500 - HMPREF1058_RS11310 0.13 -1.0 405,548 - HMPREF1058_RS11310 0.19 -0.2 405,548 - HMPREF1058_RS11310 0.19 -2.0 405,554 - HMPREF1058_RS11310 0.20 +0.3 405,556 - HMPREF1058_RS11310 0.20 -1.9 405,622 - HMPREF1058_RS11310 0.28 -0.4 405,844 - HMPREF1058_RS11310 0.56 +0.1 405,844 - HMPREF1058_RS11310 0.56 +0.1 405,844 - HMPREF1058_RS11310 0.56 -0.5 405,844 - HMPREF1058_RS11310 0.56 -1.9 406,016 - HMPREF1058_RS11310 0.78 -0.4 406,019 - HMPREF1058_RS11310 0.78 -1.2 406,030 - HMPREF1058_RS11310 0.79 -1.1 406,088 - HMPREF1058_RS11310 0.87 -1.8 406,200 - +0.6 406,478 - +0.4 406,486 - -0.8 406,486 - -0.5 406,501 - -0.8 406,501 - +0.2 406,501 - +0.0 406,528 - +0.6 406,544 - -0.2 406,544 - -0.3 406,546 - -0.4 406,546 - -0.2 406,546 - -1.0 406,546 - -1.0 406,546 - -0.0 406,622 - HMPREF1058_RS11300 0.15 -0.7 406,645 - HMPREF1058_RS11300 0.18 +0.1 406,650 - HMPREF1058_RS11300 0.18 +0.2 406,716 - HMPREF1058_RS11300 0.26 +1.3 406,823 - HMPREF1058_RS11300 0.38 +0.1 406,944 - HMPREF1058_RS11300 0.52 -0.6 407,115 - HMPREF1058_RS11300 0.72 -1.0 407,117 - +0.3 407,117 - HMPREF1058_RS11300 0.72 +0.3 407,117 - HMPREF1058_RS11300 0.72 +0.6
Or see this region's nucleotide sequence