Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10925 and HMPREF1058_RS10920 are separated by 0 nucleotides HMPREF1058_RS10920 and HMPREF1058_RS10915 are separated by 15 nucleotides
HMPREF1058_RS10925: HMPREF1058_RS10925 - arginine--tRNA ligase, at 527,407 to 529,227
_RS10925
HMPREF1058_RS10920: HMPREF1058_RS10920 - viroplasmin family protein, at 529,228 to 529,854
_RS10920
HMPREF1058_RS10915: HMPREF1058_RS10915 - alkaline phosphatase family protein, at 529,870 to 531,696
_RS10915
Position (kb) 529
530 Strain fitness (log2 ratio) -2
-1
0
1 at 529.225 kb on + strand at 529.314 kb on - strand, within HMPREF1058_RS10920 at 529.336 kb on + strand, within HMPREF1058_RS10920 at 529.396 kb on + strand, within HMPREF1058_RS10920 at 529.398 kb on + strand, within HMPREF1058_RS10920 at 529.400 kb on + strand, within HMPREF1058_RS10920 at 529.458 kb on + strand, within HMPREF1058_RS10920 at 529.525 kb on + strand, within HMPREF1058_RS10920 at 529.526 kb on - strand, within HMPREF1058_RS10920 at 529.568 kb on - strand, within HMPREF1058_RS10920 at 529.784 kb on - strand, within HMPREF1058_RS10920 at 529.870 kb on - strand at 529.888 kb on + strand at 529.891 kb on - strand at 529.901 kb on - strand at 529.908 kb on + strand at 529.993 kb on + strand at 529.994 kb on - strand at 529.996 kb on - strand at 530.003 kb on + strand at 530.072 kb on + strand, within HMPREF1058_RS10915 at 530.079 kb on - strand, within HMPREF1058_RS10915 at 530.148 kb on + strand, within HMPREF1058_RS10915 at 530.149 kb on - strand, within HMPREF1058_RS10915 at 530.183 kb on - strand, within HMPREF1058_RS10915 at 530.225 kb on - strand, within HMPREF1058_RS10915 at 530.317 kb on - strand, within HMPREF1058_RS10915 at 530.397 kb on - strand, within HMPREF1058_RS10915 at 530.421 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.436 kb on - strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.456 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.635 kb on - strand, within HMPREF1058_RS10915 at 530.797 kb on - strand, within HMPREF1058_RS10915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 529,225 + -0.6 529,314 - HMPREF1058_RS10920 0.14 -1.8 529,336 + HMPREF1058_RS10920 0.17 +0.9 529,396 + HMPREF1058_RS10920 0.27 -0.4 529,398 + HMPREF1058_RS10920 0.27 +0.6 529,400 + HMPREF1058_RS10920 0.27 -0.4 529,458 + HMPREF1058_RS10920 0.37 +0.5 529,525 + HMPREF1058_RS10920 0.47 -1.7 529,526 - HMPREF1058_RS10920 0.48 -2.3 529,568 - HMPREF1058_RS10920 0.54 -0.2 529,784 - HMPREF1058_RS10920 0.89 -1.7 529,870 - -0.4 529,888 + -0.2 529,891 - +0.1 529,901 - +0.9 529,908 + -0.6 529,993 + -0.1 529,994 - +0.7 529,996 - -0.4 530,003 + -0.4 530,072 + HMPREF1058_RS10915 0.11 -1.1 530,079 - HMPREF1058_RS10915 0.11 -0.4 530,148 + HMPREF1058_RS10915 0.15 -0.7 530,149 - HMPREF1058_RS10915 0.15 -0.8 530,183 - HMPREF1058_RS10915 0.17 -0.7 530,225 - HMPREF1058_RS10915 0.19 -0.9 530,317 - HMPREF1058_RS10915 0.24 -0.9 530,397 - HMPREF1058_RS10915 0.29 -0.5 530,421 + HMPREF1058_RS10915 0.30 -0.8 530,423 + HMPREF1058_RS10915 0.30 -0.0 530,423 + HMPREF1058_RS10915 0.30 +0.6 530,424 - HMPREF1058_RS10915 0.30 +0.6 530,424 - HMPREF1058_RS10915 0.30 -1.0 530,436 - HMPREF1058_RS10915 0.31 -0.0 530,451 + HMPREF1058_RS10915 0.32 -1.9 530,451 + HMPREF1058_RS10915 0.32 +0.1 530,451 + HMPREF1058_RS10915 0.32 -0.5 530,456 + HMPREF1058_RS10915 0.32 -0.2 530,634 + HMPREF1058_RS10915 0.42 -0.6 530,634 + HMPREF1058_RS10915 0.42 -0.3 530,635 - HMPREF1058_RS10915 0.42 +0.1 530,797 - HMPREF1058_RS10915 0.51 -0.3
Or see this region's nucleotide sequence