Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10505 and HMPREF1058_RS10500 are separated by 92 nucleotides HMPREF1058_RS10500 and HMPREF1058_RS10495 are separated by 210 nucleotides HMPREF1058_RS10495 and HMPREF1058_RS10490 overlap by 20 nucleotides
HMPREF1058_RS10505: HMPREF1058_RS10505 - DUF4981 domain-containing protein, at 650,615 to 653,944
_RS10505
HMPREF1058_RS10500: HMPREF1058_RS10500 - HU family DNA-binding protein, at 654,037 to 654,309
_RS10500
HMPREF1058_RS10495: HMPREF1058_RS10495 - rhomboid family intramembrane serine protease, at 654,520 to 655,197
_RS10495
HMPREF1058_RS10490: HMPREF1058_RS10490 - rhomboid family intramembrane serine protease, at 655,178 to 656,071
_RS10490
Position (kb) 654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 653.065 kb on + strand, within HMPREF1058_RS10505 at 653.170 kb on + strand, within HMPREF1058_RS10505 at 653.179 kb on + strand, within HMPREF1058_RS10505 at 653.181 kb on + strand, within HMPREF1058_RS10505 at 653.249 kb on + strand, within HMPREF1058_RS10505 at 653.358 kb on + strand, within HMPREF1058_RS10505 at 653.433 kb on + strand, within HMPREF1058_RS10505 at 653.436 kb on - strand, within HMPREF1058_RS10505 at 653.469 kb on - strand, within HMPREF1058_RS10505 at 653.615 kb on + strand at 653.616 kb on - strand at 653.709 kb on + strand at 653.712 kb on + strand at 653.726 kb on - strand at 653.742 kb on + strand at 653.742 kb on + strand at 653.846 kb on - strand at 653.861 kb on + strand at 654.039 kb on - strand at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.100 kb on - strand, within HMPREF1058_RS10500 at 654.215 kb on - strand, within HMPREF1058_RS10500 at 654.322 kb on + strand at 654.330 kb on - strand at 654.335 kb on + strand at 654.368 kb on + strand at 654.369 kb on - strand at 654.515 kb on + strand at 654.601 kb on + strand, within HMPREF1058_RS10495 at 654.681 kb on + strand, within HMPREF1058_RS10495 at 654.792 kb on + strand, within HMPREF1058_RS10495 at 654.796 kb on + strand, within HMPREF1058_RS10495 at 655.145 kb on + strand at 655.173 kb on + strand at 655.190 kb on - strand at 655.190 kb on - strand at 655.228 kb on - strand at 655.229 kb on + strand at 655.229 kb on + strand at 655.230 kb on - strand at 655.230 kb on - strand at 655.231 kb on + strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.244 kb on + strand at 655.246 kb on + strand at 655.246 kb on + strand at 655.246 kb on + strand at 655.247 kb on - strand at 655.247 kb on - strand at 655.261 kb on - strand at 655.270 kb on - strand, within HMPREF1058_RS10490
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 653,065 + HMPREF1058_RS10505 0.74 -0.1 653,170 + HMPREF1058_RS10505 0.77 -0.9 653,179 + HMPREF1058_RS10505 0.77 -0.8 653,181 + HMPREF1058_RS10505 0.77 +0.1 653,249 + HMPREF1058_RS10505 0.79 -1.8 653,358 + HMPREF1058_RS10505 0.82 -0.0 653,433 + HMPREF1058_RS10505 0.85 -0.2 653,436 - HMPREF1058_RS10505 0.85 +0.7 653,469 - HMPREF1058_RS10505 0.86 -0.3 653,615 + -0.1 653,616 - -0.2 653,709 + -0.3 653,712 + -0.5 653,726 - -0.1 653,742 + -0.1 653,742 + -0.4 653,846 - +0.2 653,861 + +0.0 654,039 - -0.1 654,099 + HMPREF1058_RS10500 0.23 -1.3 654,099 + HMPREF1058_RS10500 0.23 -0.9 654,099 + HMPREF1058_RS10500 0.23 -0.6 654,100 - HMPREF1058_RS10500 0.23 -1.0 654,215 - HMPREF1058_RS10500 0.65 -0.3 654,322 + +0.3 654,330 - -1.3 654,335 + -0.4 654,368 + -0.3 654,369 - -0.8 654,515 + -0.5 654,601 + HMPREF1058_RS10495 0.12 -0.6 654,681 + HMPREF1058_RS10495 0.24 +1.4 654,792 + HMPREF1058_RS10495 0.40 +0.3 654,796 + HMPREF1058_RS10495 0.41 -1.2 655,145 + -1.5 655,173 + -0.9 655,190 - -0.9 655,190 - -1.3 655,228 - +1.3 655,229 + +0.4 655,229 + +1.1 655,230 - -0.5 655,230 - +1.2 655,231 + -1.6 655,242 + +0.1 655,242 + -0.3 655,244 + -0.7 655,246 + +0.1 655,246 + -0.1 655,246 + +0.7 655,247 - -3.2 655,247 - -0.9 655,261 - +0.1 655,270 - HMPREF1058_RS10490 0.10 -1.2
Or see this region's nucleotide sequence