Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09595 and HMPREF1058_RS09590 are separated by 97 nucleotides HMPREF1058_RS09590 and HMPREF1058_RS09585 are separated by 14 nucleotides HMPREF1058_RS09585 and HMPREF1058_RS09580 are separated by 23 nucleotides
HMPREF1058_RS09595: HMPREF1058_RS09595 - orotate phosphoribosyltransferase, at 839,701 to 840,339
_RS09595
HMPREF1058_RS09590: HMPREF1058_RS09590 - hypothetical protein, at 840,437 to 840,841
_RS09590
HMPREF1058_RS09585: HMPREF1058_RS09585 - argininosuccinate lyase, at 840,856 to 842,196
_RS09585
HMPREF1058_RS09580: HMPREF1058_RS09580 - aldo/keto reductase, at 842,220 to 843,212
_RS09580
Position (kb) 840
841
842
843 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 840.145 kb on - strand, within HMPREF1058_RS09595 at 840.337 kb on + strand at 840.359 kb on + strand at 840.360 kb on - strand at 840.361 kb on + strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.465 kb on - strand at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.510 kb on + strand, within HMPREF1058_RS09590 at 840.528 kb on + strand, within HMPREF1058_RS09590 at 840.553 kb on - strand, within HMPREF1058_RS09590 at 840.559 kb on + strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.640 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.757 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.855 kb on + strand at 840.903 kb on - strand at 840.944 kb on - strand at 840.962 kb on + strand at 840.962 kb on + strand at 840.982 kb on - strand at 840.999 kb on + strand, within HMPREF1058_RS09585 at 841.035 kb on - strand, within HMPREF1058_RS09585 at 841.046 kb on + strand, within HMPREF1058_RS09585 at 841.053 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.058 kb on - strand, within HMPREF1058_RS09585 at 841.109 kb on + strand, within HMPREF1058_RS09585 at 841.110 kb on - strand, within HMPREF1058_RS09585 at 841.121 kb on + strand, within HMPREF1058_RS09585 at 841.219 kb on - strand, within HMPREF1058_RS09585 at 841.290 kb on + strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.526 kb on - strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.558 kb on - strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.696 kb on - strand, within HMPREF1058_RS09585 at 841.697 kb on + strand, within HMPREF1058_RS09585 at 841.832 kb on + strand, within HMPREF1058_RS09585 at 841.891 kb on + strand, within HMPREF1058_RS09585 at 841.893 kb on + strand, within HMPREF1058_RS09585 at 841.893 kb on + strand, within HMPREF1058_RS09585 at 841.894 kb on - strand, within HMPREF1058_RS09585 at 841.924 kb on - strand, within HMPREF1058_RS09585 at 841.924 kb on - strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.949 kb on - strand, within HMPREF1058_RS09585 at 841.957 kb on - strand, within HMPREF1058_RS09585 at 842.014 kb on - strand, within HMPREF1058_RS09585 at 842.033 kb on + strand, within HMPREF1058_RS09585 at 842.033 kb on + strand, within HMPREF1058_RS09585 at 842.034 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.085 kb on + strand at 842.187 kb on - strand at 842.200 kb on + strand at 842.213 kb on + strand at 842.226 kb on + strand at 842.227 kb on - strand at 842.268 kb on + strand at 842.301 kb on - strand at 842.321 kb on + strand, within HMPREF1058_RS09580 at 842.366 kb on + strand, within HMPREF1058_RS09580 at 842.367 kb on - strand, within HMPREF1058_RS09580 at 842.411 kb on + strand, within HMPREF1058_RS09580 at 842.412 kb on - strand, within HMPREF1058_RS09580 at 842.499 kb on - strand, within HMPREF1058_RS09580 at 842.499 kb on - strand, within HMPREF1058_RS09580 at 842.610 kb on + strand, within HMPREF1058_RS09580 at 842.620 kb on + strand, within HMPREF1058_RS09580 at 842.620 kb on + strand, within HMPREF1058_RS09580 at 842.626 kb on - strand, within HMPREF1058_RS09580 at 842.627 kb on + strand, within HMPREF1058_RS09580 at 842.628 kb on - strand, within HMPREF1058_RS09580 at 842.687 kb on - strand, within HMPREF1058_RS09580 at 842.687 kb on - strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.710 kb on - strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.810 kb on + strand, within HMPREF1058_RS09580 at 842.811 kb on - strand at 842.811 kb on - strand, within HMPREF1058_RS09580 at 842.873 kb on + strand, within HMPREF1058_RS09580 at 842.912 kb on + strand, within HMPREF1058_RS09580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 840,145 - HMPREF1058_RS09595 0.69 -0.9 840,337 + -0.3 840,359 + +0.1 840,360 - -5.6 840,361 + +0.9 840,464 + +0.3 840,465 - -1.9 840,465 - -2.3 840,497 - HMPREF1058_RS09590 0.15 -0.7 840,497 - HMPREF1058_RS09590 0.15 -2.9 840,510 + HMPREF1058_RS09590 0.18 +0.5 840,528 + HMPREF1058_RS09590 0.22 +0.8 840,553 - HMPREF1058_RS09590 0.29 -1.0 840,559 + HMPREF1058_RS09590 0.30 +1.5 840,595 - HMPREF1058_RS09590 0.39 -3.9 840,595 - HMPREF1058_RS09590 0.39 -1.0 840,640 + HMPREF1058_RS09590 0.50 +0.7 840,739 + HMPREF1058_RS09590 0.75 +0.9 840,739 + HMPREF1058_RS09590 0.75 -0.1 840,757 + HMPREF1058_RS09590 0.79 +0.0 840,763 + HMPREF1058_RS09590 0.80 +0.3 840,763 + HMPREF1058_RS09590 0.80 -0.1 840,763 + HMPREF1058_RS09590 0.80 +0.6 840,855 + -1.0 840,903 - -0.7 840,944 - -5.5 840,962 + -2.3 840,962 + -5.9 840,982 - -2.7 840,999 + HMPREF1058_RS09585 0.11 -5.6 841,035 - HMPREF1058_RS09585 0.13 -2.7 841,046 + HMPREF1058_RS09585 0.14 -2.8 841,053 + HMPREF1058_RS09585 0.15 -2.6 841,057 + HMPREF1058_RS09585 0.15 -5.4 841,057 + HMPREF1058_RS09585 0.15 -5.7 841,057 + HMPREF1058_RS09585 0.15 -3.8 841,057 + HMPREF1058_RS09585 0.15 -4.4 841,058 - HMPREF1058_RS09585 0.15 -2.0 841,109 + HMPREF1058_RS09585 0.19 -2.5 841,110 - HMPREF1058_RS09585 0.19 -3.1 841,121 + HMPREF1058_RS09585 0.20 -5.9 841,219 - HMPREF1058_RS09585 0.27 -1.7 841,290 + HMPREF1058_RS09585 0.32 -2.9 841,291 - HMPREF1058_RS09585 0.32 -4.7 841,291 - HMPREF1058_RS09585 0.32 -6.0 841,294 + HMPREF1058_RS09585 0.33 -4.7 841,294 + HMPREF1058_RS09585 0.33 -0.2 841,295 - HMPREF1058_RS09585 0.33 -5.0 841,295 - HMPREF1058_RS09585 0.33 -2.8 841,295 - HMPREF1058_RS09585 0.33 -4.3 841,296 + HMPREF1058_RS09585 0.33 -5.8 841,296 + HMPREF1058_RS09585 0.33 -4.3 841,296 + HMPREF1058_RS09585 0.33 -4.8 841,297 - HMPREF1058_RS09585 0.33 -1.0 841,297 - HMPREF1058_RS09585 0.33 -6.1 841,526 - HMPREF1058_RS09585 0.50 -5.2 841,527 + HMPREF1058_RS09585 0.50 -2.7 841,527 + HMPREF1058_RS09585 0.50 -7.3 841,527 + HMPREF1058_RS09585 0.50 -3.9 841,528 - HMPREF1058_RS09585 0.50 -3.7 841,528 - HMPREF1058_RS09585 0.50 -3.8 841,537 + HMPREF1058_RS09585 0.51 -5.6 841,537 + HMPREF1058_RS09585 0.51 -5.0 841,558 - HMPREF1058_RS09585 0.52 -3.0 841,632 + HMPREF1058_RS09585 0.58 -0.2 841,632 + HMPREF1058_RS09585 0.58 -1.7 841,696 - HMPREF1058_RS09585 0.63 -3.4 841,697 + HMPREF1058_RS09585 0.63 -2.4 841,832 + HMPREF1058_RS09585 0.73 -5.2 841,891 + HMPREF1058_RS09585 0.77 -6.7 841,893 + HMPREF1058_RS09585 0.77 -5.3 841,893 + HMPREF1058_RS09585 0.77 -2.9 841,894 - HMPREF1058_RS09585 0.77 -3.8 841,924 - HMPREF1058_RS09585 0.80 -1.7 841,924 - HMPREF1058_RS09585 0.80 -5.8 841,948 + HMPREF1058_RS09585 0.81 -2.1 841,948 + HMPREF1058_RS09585 0.81 -4.3 841,948 + HMPREF1058_RS09585 0.81 -5.3 841,948 + HMPREF1058_RS09585 0.81 -4.9 841,949 - HMPREF1058_RS09585 0.82 -3.5 841,957 - HMPREF1058_RS09585 0.82 -4.0 842,014 - HMPREF1058_RS09585 0.86 -3.9 842,033 + HMPREF1058_RS09585 0.88 -5.0 842,033 + HMPREF1058_RS09585 0.88 -4.8 842,034 - -0.5 842,074 - -2.1 842,074 - -6.7 842,085 + -3.5 842,187 - -2.4 842,200 + +0.0 842,213 + +0.4 842,226 + +0.1 842,227 - +0.2 842,268 + -0.5 842,301 - -0.7 842,321 + HMPREF1058_RS09580 0.10 +0.5 842,366 + HMPREF1058_RS09580 0.15 -0.6 842,367 - HMPREF1058_RS09580 0.15 -0.3 842,411 + HMPREF1058_RS09580 0.19 -0.9 842,412 - HMPREF1058_RS09580 0.19 +0.3 842,499 - HMPREF1058_RS09580 0.28 -0.4 842,499 - HMPREF1058_RS09580 0.28 -0.2 842,610 + HMPREF1058_RS09580 0.39 -0.1 842,620 + HMPREF1058_RS09580 0.40 -0.3 842,620 + HMPREF1058_RS09580 0.40 -0.2 842,626 - HMPREF1058_RS09580 0.41 -0.2 842,627 + HMPREF1058_RS09580 0.41 -0.3 842,628 - HMPREF1058_RS09580 0.41 +0.8 842,687 - HMPREF1058_RS09580 0.47 +0.6 842,687 - HMPREF1058_RS09580 0.47 -0.9 842,709 + HMPREF1058_RS09580 0.49 +0.5 842,709 + HMPREF1058_RS09580 0.49 -0.2 842,709 + HMPREF1058_RS09580 0.49 +0.4 842,710 - HMPREF1058_RS09580 0.49 -0.1 842,807 + HMPREF1058_RS09580 0.59 +1.0 842,807 + HMPREF1058_RS09580 0.59 -0.5 842,807 + HMPREF1058_RS09580 0.59 +0.0 842,810 + HMPREF1058_RS09580 0.59 +0.1 842,811 - -0.9 842,811 - HMPREF1058_RS09580 0.60 -0.1 842,873 + HMPREF1058_RS09580 0.66 -0.0 842,912 + HMPREF1058_RS09580 0.70 -0.4
Or see this region's nucleotide sequence