Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08975 and HMPREF1058_RS08970 are separated by 43 nucleotides HMPREF1058_RS08970 and HMPREF1058_RS08965 are separated by 187 nucleotides
HMPREF1058_RS08975: HMPREF1058_RS08975 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 976,213 to 977,982
_RS08975
HMPREF1058_RS08970: HMPREF1058_RS08970 - endonuclease/exonuclease/phosphatase family protein, at 978,026 to 978,871
_RS08970
HMPREF1058_RS08965: HMPREF1058_RS08965 - glycoside hydrolase family 97 protein, at 979,059 to 981,074
_RS08965
Position (kb) 978
979 Strain fitness (log2 ratio) -1
0
1
2
3 at 977.070 kb on + strand, within HMPREF1058_RS08975 at 977.095 kb on + strand, within HMPREF1058_RS08975 at 977.185 kb on - strand, within HMPREF1058_RS08975 at 977.254 kb on + strand, within HMPREF1058_RS08975 at 977.381 kb on + strand, within HMPREF1058_RS08975 at 977.393 kb on - strand, within HMPREF1058_RS08975 at 977.491 kb on + strand, within HMPREF1058_RS08975 at 977.592 kb on + strand, within HMPREF1058_RS08975 at 977.593 kb on - strand, within HMPREF1058_RS08975 at 977.632 kb on + strand, within HMPREF1058_RS08975 at 977.632 kb on + strand, within HMPREF1058_RS08975 at 977.633 kb on - strand, within HMPREF1058_RS08975 at 977.654 kb on + strand, within HMPREF1058_RS08975 at 977.701 kb on - strand, within HMPREF1058_RS08975 at 977.854 kb on + strand at 977.946 kb on + strand at 977.962 kb on - strand at 977.962 kb on - strand at 978.013 kb on - strand at 978.187 kb on + strand, within HMPREF1058_RS08970 at 978.351 kb on - strand, within HMPREF1058_RS08970 at 978.402 kb on + strand, within HMPREF1058_RS08970 at 978.562 kb on - strand, within HMPREF1058_RS08970 at 978.632 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.676 kb on + strand, within HMPREF1058_RS08970 at 978.709 kb on + strand, within HMPREF1058_RS08970 at 978.909 kb on - strand at 978.933 kb on - strand at 978.960 kb on + strand at 978.961 kb on - strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.964 kb on + strand at 978.965 kb on - strand at 978.979 kb on + strand at 979.010 kb on + strand at 979.029 kb on - strand at 979.058 kb on + strand at 979.058 kb on + strand at 979.059 kb on - strand at 979.059 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.069 kb on - strand at 979.074 kb on + strand at 979.077 kb on + strand at 979.082 kb on - strand at 979.082 kb on - strand at 979.157 kb on - strand at 979.205 kb on - strand at 979.343 kb on + strand, within HMPREF1058_RS08965 at 979.364 kb on + strand, within HMPREF1058_RS08965 at 979.563 kb on + strand, within HMPREF1058_RS08965 at 979.564 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.646 kb on - strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.647 kb on + strand, within HMPREF1058_RS08965 at 979.822 kb on + strand, within HMPREF1058_RS08965 at 979.823 kb on - strand, within HMPREF1058_RS08965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 977,070 + HMPREF1058_RS08975 0.48 -1.2 977,095 + HMPREF1058_RS08975 0.50 +0.1 977,185 - HMPREF1058_RS08975 0.55 +0.0 977,254 + HMPREF1058_RS08975 0.59 -1.0 977,381 + HMPREF1058_RS08975 0.66 -1.0 977,393 - HMPREF1058_RS08975 0.67 +0.5 977,491 + HMPREF1058_RS08975 0.72 -0.4 977,592 + HMPREF1058_RS08975 0.78 -0.3 977,593 - HMPREF1058_RS08975 0.78 -0.9 977,632 + HMPREF1058_RS08975 0.80 -1.2 977,632 + HMPREF1058_RS08975 0.80 +0.7 977,633 - HMPREF1058_RS08975 0.80 +0.5 977,654 + HMPREF1058_RS08975 0.81 -0.6 977,701 - HMPREF1058_RS08975 0.84 +0.5 977,854 + +0.5 977,946 + -0.9 977,962 - +0.0 977,962 - -0.2 978,013 - +1.6 978,187 + HMPREF1058_RS08970 0.19 -0.8 978,351 - HMPREF1058_RS08970 0.38 -1.3 978,402 + HMPREF1058_RS08970 0.44 -0.4 978,562 - HMPREF1058_RS08970 0.63 -1.0 978,632 + HMPREF1058_RS08970 0.72 -1.3 978,676 + HMPREF1058_RS08970 0.77 -1.2 978,676 + HMPREF1058_RS08970 0.77 -0.6 978,676 + HMPREF1058_RS08970 0.77 -0.4 978,709 + HMPREF1058_RS08970 0.81 -0.0 978,909 - -0.4 978,933 - -0.1 978,960 + -0.6 978,961 - +0.1 978,964 + +0.2 978,964 + -0.3 978,964 + -1.4 978,964 + -0.3 978,965 - -0.1 978,979 + -0.5 979,010 + -1.2 979,029 - -0.6 979,058 + +0.6 979,058 + +0.2 979,059 - -0.2 979,059 - -0.4 979,069 - -0.2 979,069 - +0.4 979,069 - -0.3 979,074 + +0.4 979,077 + -0.5 979,082 - -0.4 979,082 - -0.1 979,157 - +0.8 979,205 - -0.5 979,343 + HMPREF1058_RS08965 0.14 +0.1 979,364 + HMPREF1058_RS08965 0.15 -0.4 979,563 + HMPREF1058_RS08965 0.25 -0.6 979,564 - HMPREF1058_RS08965 0.25 -0.6 979,646 - HMPREF1058_RS08965 0.29 -1.3 979,646 - HMPREF1058_RS08965 0.29 -0.3 979,647 + HMPREF1058_RS08965 0.29 +2.8 979,647 + HMPREF1058_RS08965 0.29 -0.8 979,822 + HMPREF1058_RS08965 0.38 -0.3 979,823 - HMPREF1058_RS08965 0.38 -0.4
Or see this region's nucleotide sequence