Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07675 and HMPREF1058_RS07670 are separated by 262 nucleotides HMPREF1058_RS07670 and HMPREF1058_RS07665 are separated by 1 nucleotides HMPREF1058_RS07665 and HMPREF1058_RS07660 are separated by 93 nucleotides
HMPREF1058_RS07675: HMPREF1058_RS07675 - elongation factor G, at 163,273 to 165,432
_RS07675
HMPREF1058_RS07670: HMPREF1058_RS07670 - HAMP domain-containing histidine kinase, at 165,695 to 167,263
_RS07670
HMPREF1058_RS07665: HMPREF1058_RS07665 - response regulator transcription factor, at 167,265 to 167,963
_RS07665
HMPREF1058_RS07660: HMPREF1058_RS07660 - IS1182 family transposase, at 168,057 to 169,712
_RS07660
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.824 kb on + strand, within HMPREF1058_RS07675 at 164.826 kb on + strand, within HMPREF1058_RS07675 at 164.876 kb on + strand, within HMPREF1058_RS07675 at 164.877 kb on - strand, within HMPREF1058_RS07675 at 165.021 kb on - strand, within HMPREF1058_RS07675 at 165.114 kb on + strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.624 kb on + strand at 165.720 kb on + strand at 165.758 kb on + strand at 165.871 kb on + strand, within HMPREF1058_RS07670 at 165.979 kb on + strand, within HMPREF1058_RS07670 at 166.198 kb on + strand, within HMPREF1058_RS07670 at 166.276 kb on + strand, within HMPREF1058_RS07670 at 167.121 kb on + strand at 167.217 kb on + strand at 167.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 164,798 - HMPREF1058_RS07675 0.71 +1.5 164,798 - HMPREF1058_RS07675 0.71 +1.2 164,824 + HMPREF1058_RS07675 0.72 +0.7 164,826 + HMPREF1058_RS07675 0.72 +0.3 164,876 + HMPREF1058_RS07675 0.74 +0.6 164,877 - HMPREF1058_RS07675 0.74 -1.8 165,021 - HMPREF1058_RS07675 0.81 -0.9 165,114 + HMPREF1058_RS07675 0.85 -0.3 165,115 - HMPREF1058_RS07675 0.85 +1.4 165,115 - HMPREF1058_RS07675 0.85 +1.3 165,624 + +0.5 165,720 + +1.2 165,758 + -1.2 165,871 + HMPREF1058_RS07670 0.11 +0.1 165,979 + HMPREF1058_RS07670 0.18 -0.1 166,198 + HMPREF1058_RS07670 0.32 -3.6 166,276 + HMPREF1058_RS07670 0.37 +2.2 167,121 + -0.6 167,217 + -1.7 167,241 + +0.3
Or see this region's nucleotide sequence