Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06355 and HMPREF1058_RS06350 are separated by 178 nucleotides HMPREF1058_RS06350 and HMPREF1058_RS06345 are separated by 20 nucleotides HMPREF1058_RS06345 and HMPREF1058_RS06340 are separated by 40 nucleotides
HMPREF1058_RS06355: HMPREF1058_RS06355 - threonine ammonia-lyase, at 500,066 to 501,262
_RS06355
HMPREF1058_RS06350: HMPREF1058_RS06350 - SoxR reducing system RseC family protein, at 501,441 to 501,869
_RS06350
HMPREF1058_RS06345: HMPREF1058_RS06345 - Fe-S cluster domain-containing protein, at 501,890 to 502,843
_RS06345
HMPREF1058_RS06340: HMPREF1058_RS06340 - electron transport complex subunit RsxC, at 502,884 to 504,221
_RS06340
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 500.929 kb on - strand, within HMPREF1058_RS06355 at 500.942 kb on - strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.032 kb on - strand, within HMPREF1058_RS06355 at 501.209 kb on - strand at 501.375 kb on + strand at 501.378 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.452 kb on - strand at 501.537 kb on - strand, within HMPREF1058_RS06350 at 501.640 kb on - strand, within HMPREF1058_RS06350 at 501.710 kb on + strand, within HMPREF1058_RS06350 at 501.716 kb on - strand, within HMPREF1058_RS06350 at 501.719 kb on + strand, within HMPREF1058_RS06350 at 501.752 kb on - strand, within HMPREF1058_RS06350 at 501.801 kb on - strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.809 kb on - strand, within HMPREF1058_RS06350 at 501.842 kb on + strand at 502.119 kb on + strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.155 kb on + strand, within HMPREF1058_RS06345 at 502.157 kb on - strand, within HMPREF1058_RS06345 at 502.222 kb on + strand, within HMPREF1058_RS06345 at 502.561 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.628 kb on + strand, within HMPREF1058_RS06345 at 502.729 kb on - strand, within HMPREF1058_RS06345 at 502.773 kb on + strand at 502.857 kb on + strand at 502.857 kb on + strand at 503.047 kb on + strand, within HMPREF1058_RS06340 at 503.048 kb on - strand, within HMPREF1058_RS06340 at 503.126 kb on - strand, within HMPREF1058_RS06340 at 503.284 kb on + strand, within HMPREF1058_RS06340 at 503.285 kb on - strand, within HMPREF1058_RS06340 at 503.364 kb on - strand, within HMPREF1058_RS06340 at 503.374 kb on + strand, within HMPREF1058_RS06340 at 503.375 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 500,929 - HMPREF1058_RS06355 0.72 -0.8 500,942 - HMPREF1058_RS06355 0.73 -0.9 501,031 + HMPREF1058_RS06355 0.81 -0.3 501,031 + HMPREF1058_RS06355 0.81 +0.7 501,032 - HMPREF1058_RS06355 0.81 +0.7 501,209 - -0.6 501,375 + -0.6 501,378 - +0.4 501,385 - -1.6 501,385 - -0.9 501,385 - -0.7 501,452 - -0.5 501,537 - HMPREF1058_RS06350 0.22 -0.3 501,640 - HMPREF1058_RS06350 0.46 -0.4 501,710 + HMPREF1058_RS06350 0.63 -0.3 501,716 - HMPREF1058_RS06350 0.64 -1.9 501,719 + HMPREF1058_RS06350 0.65 +0.2 501,752 - HMPREF1058_RS06350 0.72 +0.2 501,801 - HMPREF1058_RS06350 0.84 -1.5 501,802 + HMPREF1058_RS06350 0.84 -1.5 501,802 + HMPREF1058_RS06350 0.84 +3.5 501,803 - HMPREF1058_RS06350 0.84 -0.8 501,803 - HMPREF1058_RS06350 0.84 -1.0 501,805 - HMPREF1058_RS06350 0.85 -1.3 501,805 - HMPREF1058_RS06350 0.85 -2.0 501,805 - HMPREF1058_RS06350 0.85 -0.6 501,809 - HMPREF1058_RS06350 0.86 +1.2 501,842 + -0.5 502,119 + HMPREF1058_RS06345 0.24 -0.6 502,120 - HMPREF1058_RS06345 0.24 -0.1 502,120 - HMPREF1058_RS06345 0.24 -0.9 502,155 + HMPREF1058_RS06345 0.28 -1.8 502,157 - HMPREF1058_RS06345 0.28 -0.9 502,222 + HMPREF1058_RS06345 0.35 +0.5 502,561 + HMPREF1058_RS06345 0.70 +0.4 502,606 + HMPREF1058_RS06345 0.75 -0.4 502,606 + HMPREF1058_RS06345 0.75 -1.1 502,628 + HMPREF1058_RS06345 0.77 -0.7 502,729 - HMPREF1058_RS06345 0.88 -0.2 502,773 + -0.3 502,857 + -0.6 502,857 + -0.9 503,047 + HMPREF1058_RS06340 0.12 -1.8 503,048 - HMPREF1058_RS06340 0.12 -0.6 503,126 - HMPREF1058_RS06340 0.18 -1.3 503,284 + HMPREF1058_RS06340 0.30 +2.1 503,285 - HMPREF1058_RS06340 0.30 -0.5 503,364 - HMPREF1058_RS06340 0.36 -1.6 503,374 + HMPREF1058_RS06340 0.37 -2.3 503,375 - HMPREF1058_RS06340 0.37 -0.8 503,612 - HMPREF1058_RS06340 0.54 -0.0 503,612 - HMPREF1058_RS06340 0.54 +3.2 503,686 + HMPREF1058_RS06340 0.60 +2.2 503,686 + HMPREF1058_RS06340 0.60 -0.1 503,687 - HMPREF1058_RS06340 0.60 -0.8 503,687 - HMPREF1058_RS06340 0.60 -0.2
Or see this region's nucleotide sequence