Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06025

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06030 and HMPREF1058_RS06025 are separated by 116 nucleotidesHMPREF1058_RS06025 and HMPREF1058_RS06020 are separated by 122 nucleotides HMPREF1058_RS06030: HMPREF1058_RS06030 - aminopeptidase P family protein, at 20,707 to 21,867 _RS06030 HMPREF1058_RS06025: HMPREF1058_RS06025 - hypothetical protein, at 21,984 to 22,406 _RS06025 HMPREF1058_RS06020: HMPREF1058_RS06020 - efflux RND transporter periplasmic adaptor subunit, at 22,529 to 23,680 _RS06020 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.027 kb on + strand, within HMPREF1058_RS06030at 21.074 kb on + strand, within HMPREF1058_RS06030at 21.074 kb on + strand, within HMPREF1058_RS06030at 21.126 kb on + strand, within HMPREF1058_RS06030at 21.126 kb on + strand, within HMPREF1058_RS06030at 21.126 kb on + strand, within HMPREF1058_RS06030at 21.126 kb on + strand, within HMPREF1058_RS06030at 21.127 kb on - strand, within HMPREF1058_RS06030at 21.127 kb on - strand, within HMPREF1058_RS06030at 21.127 kb on - strand, within HMPREF1058_RS06030at 21.128 kb on + strand, within HMPREF1058_RS06030at 21.148 kb on + strand, within HMPREF1058_RS06030at 21.160 kb on + strand, within HMPREF1058_RS06030at 21.267 kb on + strand, within HMPREF1058_RS06030at 21.292 kb on - strand, within HMPREF1058_RS06030at 21.296 kb on - strand, within HMPREF1058_RS06030at 21.403 kb on + strand, within HMPREF1058_RS06030at 21.404 kb on - strand, within HMPREF1058_RS06030at 21.404 kb on - strand, within HMPREF1058_RS06030at 21.404 kb on - strand, within HMPREF1058_RS06030at 21.417 kb on + strand, within HMPREF1058_RS06030at 21.418 kb on - strand, within HMPREF1058_RS06030at 21.420 kb on + strand, within HMPREF1058_RS06030at 21.421 kb on - strand, within HMPREF1058_RS06030at 21.422 kb on + strand, within HMPREF1058_RS06030at 21.423 kb on - strand, within HMPREF1058_RS06030at 21.505 kb on - strand, within HMPREF1058_RS06030at 21.557 kb on + strand, within HMPREF1058_RS06030at 21.558 kb on - strand, within HMPREF1058_RS06030at 21.605 kb on - strand, within HMPREF1058_RS06030at 21.611 kb on - strand, within HMPREF1058_RS06030at 21.651 kb on + strand, within HMPREF1058_RS06030at 21.684 kb on + strand, within HMPREF1058_RS06030at 21.698 kb on - strand, within HMPREF1058_RS06030at 21.698 kb on - strand, within HMPREF1058_RS06030at 21.731 kb on + strand, within HMPREF1058_RS06030at 21.763 kb on - strandat 21.765 kb on - strandat 21.775 kb on + strandat 21.780 kb on + strandat 21.863 kb on - strandat 21.867 kb on + strandat 21.867 kb on + strandat 21.926 kb on + strandat 21.939 kb on - strandat 22.075 kb on - strand, within HMPREF1058_RS06025at 22.091 kb on - strand, within HMPREF1058_RS06025at 22.096 kb on + strand, within HMPREF1058_RS06025at 22.097 kb on - strand, within HMPREF1058_RS06025at 22.105 kb on + strand, within HMPREF1058_RS06025at 22.106 kb on - strand, within HMPREF1058_RS06025at 22.126 kb on + strandat 22.126 kb on + strand, within HMPREF1058_RS06025at 22.126 kb on + strand, within HMPREF1058_RS06025at 22.127 kb on - strand, within HMPREF1058_RS06025at 22.274 kb on - strand, within HMPREF1058_RS06025at 22.370 kb on - strandat 22.382 kb on + strandat 22.404 kb on + strandat 22.417 kb on + strandat 22.424 kb on + strandat 22.424 kb on + strandat 22.425 kb on - strandat 22.431 kb on - strandat 22.431 kb on - strandat 22.431 kb on - strandat 22.431 kb on - strandat 22.434 kb on + strandat 22.435 kb on - strandat 22.497 kb on + strandat 22.581 kb on + strandat 22.581 kb on + strandat 22.679 kb on + strand, within HMPREF1058_RS06020at 22.679 kb on + strand, within HMPREF1058_RS06020at 22.680 kb on - strand, within HMPREF1058_RS06020at 22.683 kb on + strand, within HMPREF1058_RS06020at 22.699 kb on + strand, within HMPREF1058_RS06020at 22.749 kb on + strand, within HMPREF1058_RS06020at 22.749 kb on + strand, within HMPREF1058_RS06020at 22.750 kb on - strand, within HMPREF1058_RS06020at 22.750 kb on - strand, within HMPREF1058_RS06020at 22.750 kb on - strand, within HMPREF1058_RS06020at 22.756 kb on - strand, within HMPREF1058_RS06020at 22.814 kb on + strand, within HMPREF1058_RS06020at 22.828 kb on - strand, within HMPREF1058_RS06020at 22.869 kb on - strand, within HMPREF1058_RS06020at 23.031 kb on - strandat 23.035 kb on + strand, within HMPREF1058_RS06020at 23.038 kb on + strand, within HMPREF1058_RS06020at 23.039 kb on - strand, within HMPREF1058_RS06020at 23.064 kb on + strand, within HMPREF1058_RS06020at 23.064 kb on + strand, within HMPREF1058_RS06020at 23.064 kb on + strand, within HMPREF1058_RS06020at 23.065 kb on - strand, within HMPREF1058_RS06020at 23.065 kb on - strand, within HMPREF1058_RS06020at 23.071 kb on + strand, within HMPREF1058_RS06020at 23.080 kb on + strand, within HMPREF1058_RS06020at 23.124 kb on + strand, within HMPREF1058_RS06020at 23.124 kb on + strand, within HMPREF1058_RS06020at 23.124 kb on + strand, within HMPREF1058_RS06020at 23.227 kb on + strand, within HMPREF1058_RS06020at 23.261 kb on + strand, within HMPREF1058_RS06020at 23.280 kb on + strand, within HMPREF1058_RS06020at 23.280 kb on + strand, within HMPREF1058_RS06020at 23.280 kb on + strand, within HMPREF1058_RS06020at 23.281 kb on - strand, within HMPREF1058_RS06020at 23.386 kb on - strand, within HMPREF1058_RS06020at 23.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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21,027 + HMPREF1058_RS06030 0.28 +0.6
21,074 + HMPREF1058_RS06030 0.32 -0.3
21,074 + HMPREF1058_RS06030 0.32 +1.0
21,126 + HMPREF1058_RS06030 0.36 +0.0
21,126 + HMPREF1058_RS06030 0.36 -0.2
21,126 + HMPREF1058_RS06030 0.36 -1.2
21,126 + HMPREF1058_RS06030 0.36 +0.1
21,127 - HMPREF1058_RS06030 0.36 +0.6
21,127 - HMPREF1058_RS06030 0.36 +0.7
21,127 - HMPREF1058_RS06030 0.36 -0.5
21,128 + HMPREF1058_RS06030 0.36 -2.0
21,148 + HMPREF1058_RS06030 0.38 +0.4
21,160 + HMPREF1058_RS06030 0.39 +0.6
21,267 + HMPREF1058_RS06030 0.48 +0.1
21,292 - HMPREF1058_RS06030 0.50 +0.3
21,296 - HMPREF1058_RS06030 0.51 +0.2
21,403 + HMPREF1058_RS06030 0.60 +0.3
21,404 - HMPREF1058_RS06030 0.60 -1.0
21,404 - HMPREF1058_RS06030 0.60 -2.2
21,404 - HMPREF1058_RS06030 0.60 -0.8
21,417 + HMPREF1058_RS06030 0.61 -0.6
21,418 - HMPREF1058_RS06030 0.61 +0.6
21,420 + HMPREF1058_RS06030 0.61 -0.9
21,421 - HMPREF1058_RS06030 0.61 -0.7
21,422 + HMPREF1058_RS06030 0.62 +0.1
21,423 - HMPREF1058_RS06030 0.62 +0.2
21,505 - HMPREF1058_RS06030 0.69 -0.3
21,557 + HMPREF1058_RS06030 0.73 +1.4
21,558 - HMPREF1058_RS06030 0.73 +0.8
21,605 - HMPREF1058_RS06030 0.77 -0.3
21,611 - HMPREF1058_RS06030 0.78 -1.0
21,651 + HMPREF1058_RS06030 0.81 -0.9
21,684 + HMPREF1058_RS06030 0.84 -1.9
21,698 - HMPREF1058_RS06030 0.85 +1.0
21,698 - HMPREF1058_RS06030 0.85 -0.9
21,731 + HMPREF1058_RS06030 0.88 -0.6
21,763 - +1.1
21,765 - -0.3
21,775 + +0.8
21,780 + -1.8
21,863 - +0.2
21,867 + +0.5
21,867 + -1.2
21,926 + -0.4
21,939 - +0.1
22,075 - HMPREF1058_RS06025 0.22 -0.1
22,091 - HMPREF1058_RS06025 0.25 -0.4
22,096 + HMPREF1058_RS06025 0.26 -0.1
22,097 - HMPREF1058_RS06025 0.27 -0.1
22,105 + HMPREF1058_RS06025 0.29 -1.4
22,106 - HMPREF1058_RS06025 0.29 -1.3
22,126 + -0.6
22,126 + HMPREF1058_RS06025 0.34 +0.4
22,126 + HMPREF1058_RS06025 0.34 -1.5
22,127 - HMPREF1058_RS06025 0.34 -1.2
22,274 - HMPREF1058_RS06025 0.69 +1.6
22,370 - -0.4
22,382 + -0.5
22,404 + -3.0
22,417 + -0.3
22,424 + -1.2
22,424 + +0.1
22,425 - -0.5
22,431 - -1.1
22,431 - +1.3
22,431 - -0.4
22,431 - +0.2
22,434 + +0.3
22,435 - -1.5
22,497 + -0.0
22,581 + -0.5
22,581 + +0.7
22,679 + HMPREF1058_RS06020 0.13 +0.0
22,679 + HMPREF1058_RS06020 0.13 -0.4
22,680 - HMPREF1058_RS06020 0.13 -0.4
22,683 + HMPREF1058_RS06020 0.13 -0.4
22,699 + HMPREF1058_RS06020 0.15 -0.9
22,749 + HMPREF1058_RS06020 0.19 -0.6
22,749 + HMPREF1058_RS06020 0.19 -0.2
22,750 - HMPREF1058_RS06020 0.19 -1.2
22,750 - HMPREF1058_RS06020 0.19 +0.4
22,750 - HMPREF1058_RS06020 0.19 -0.0
22,756 - HMPREF1058_RS06020 0.20 +0.5
22,814 + HMPREF1058_RS06020 0.25 +0.4
22,828 - HMPREF1058_RS06020 0.26 -1.4
22,869 - HMPREF1058_RS06020 0.30 +2.8
23,031 - -0.1
23,035 + HMPREF1058_RS06020 0.44 -0.2
23,038 + HMPREF1058_RS06020 0.44 -1.7
23,039 - HMPREF1058_RS06020 0.44 +0.5
23,064 + HMPREF1058_RS06020 0.46 +0.1
23,064 + HMPREF1058_RS06020 0.46 +0.5
23,064 + HMPREF1058_RS06020 0.46 -1.2
23,065 - HMPREF1058_RS06020 0.47 +0.4
23,065 - HMPREF1058_RS06020 0.47 -0.8
23,071 + HMPREF1058_RS06020 0.47 +0.4
23,080 + HMPREF1058_RS06020 0.48 +0.9
23,124 + HMPREF1058_RS06020 0.52 +1.3
23,124 + HMPREF1058_RS06020 0.52 +2.2
23,124 + HMPREF1058_RS06020 0.52 +0.6
23,227 + HMPREF1058_RS06020 0.61 -0.7
23,261 + HMPREF1058_RS06020 0.64 -0.5
23,280 + HMPREF1058_RS06020 0.65 +0.8
23,280 + HMPREF1058_RS06020 0.65 +1.4
23,280 + HMPREF1058_RS06020 0.65 -0.6
23,281 - HMPREF1058_RS06020 0.65 -0.0
23,386 - HMPREF1058_RS06020 0.74 -0.7
23,386 - +0.8

Or see this region's nucleotide sequence