Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05740 and HMPREF1058_RS05735 are separated by 99 nucleotides HMPREF1058_RS05735 and HMPREF1058_RS05730 overlap by 1 nucleotides HMPREF1058_RS05730 and HMPREF1058_RS05725 are separated by 283 nucleotides HMPREF1058_RS05725 and HMPREF1058_RS05720 overlap by 4 nucleotides
HMPREF1058_RS05740: HMPREF1058_RS05740 - hypothetical protein, at 90,249 to 91,022
_RS05740
HMPREF1058_RS05735: HMPREF1058_RS05735 - helix-turn-helix domain-containing protein, at 91,122 to 91,499
_RS05735
HMPREF1058_RS05730: HMPREF1058_RS05730 - AAA family ATPase, at 91,499 to 92,569
_RS05730
HMPREF1058_RS05725: HMPREF1058_RS05725 - hypothetical protein, at 92,853 to 93,272
_RS05725
HMPREF1058_RS05720: HMPREF1058_RS05720 - hypothetical protein, at 93,269 to 94,477
_RS05720
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1
2
3 at 90.575 kb on - strand, within HMPREF1058_RS05740 at 90.575 kb on - strand, within HMPREF1058_RS05740 at 90.583 kb on - strand, within HMPREF1058_RS05740 at 90.631 kb on + strand, within HMPREF1058_RS05740 at 90.657 kb on + strand, within HMPREF1058_RS05740 at 90.661 kb on + strand, within HMPREF1058_RS05740 at 90.698 kb on + strand, within HMPREF1058_RS05740 at 90.726 kb on + strand, within HMPREF1058_RS05740 at 90.726 kb on + strand, within HMPREF1058_RS05740 at 90.745 kb on - strand, within HMPREF1058_RS05740 at 90.751 kb on + strand, within HMPREF1058_RS05740 at 90.753 kb on + strand, within HMPREF1058_RS05740 at 90.775 kb on + strand, within HMPREF1058_RS05740 at 90.779 kb on + strand, within HMPREF1058_RS05740 at 90.779 kb on + strand, within HMPREF1058_RS05740 at 90.780 kb on - strand, within HMPREF1058_RS05740 at 90.892 kb on + strand, within HMPREF1058_RS05740 at 90.965 kb on - strand at 91.314 kb on + strand, within HMPREF1058_RS05735 at 91.516 kb on + strand at 91.584 kb on - strand at 91.584 kb on - strand at 91.690 kb on - strand, within HMPREF1058_RS05730 at 91.775 kb on + strand, within HMPREF1058_RS05730 at 91.909 kb on - strand at 91.912 kb on + strand, within HMPREF1058_RS05730 at 91.913 kb on - strand, within HMPREF1058_RS05730 at 92.523 kb on + strand at 92.597 kb on + strand at 92.598 kb on - strand at 92.598 kb on - strand at 92.599 kb on + strand at 92.600 kb on - strand at 92.602 kb on - strand at 92.604 kb on - strand at 92.638 kb on + strand at 92.638 kb on + strand at 92.649 kb on + strand at 92.649 kb on + strand at 92.650 kb on - strand at 92.650 kb on - strand at 92.650 kb on - strand at 92.664 kb on + strand at 92.750 kb on + strand at 92.774 kb on + strand at 92.774 kb on + strand at 92.775 kb on - strand at 92.775 kb on - strand at 92.798 kb on + strand at 92.799 kb on - strand at 92.838 kb on - strand at 92.839 kb on + strand at 92.840 kb on - strand at 92.840 kb on - strand at 92.946 kb on - strand, within HMPREF1058_RS05725 at 92.947 kb on + strand, within HMPREF1058_RS05725 at 93.007 kb on - strand, within HMPREF1058_RS05725 at 93.008 kb on + strand, within HMPREF1058_RS05725
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 90,575 - HMPREF1058_RS05740 0.42 -0.6 90,575 - HMPREF1058_RS05740 0.42 -0.4 90,583 - HMPREF1058_RS05740 0.43 +0.3 90,631 + HMPREF1058_RS05740 0.49 -0.1 90,657 + HMPREF1058_RS05740 0.53 -0.0 90,661 + HMPREF1058_RS05740 0.53 -0.8 90,698 + HMPREF1058_RS05740 0.58 +0.1 90,726 + HMPREF1058_RS05740 0.62 +0.1 90,726 + HMPREF1058_RS05740 0.62 -0.9 90,745 - HMPREF1058_RS05740 0.64 +1.7 90,751 + HMPREF1058_RS05740 0.65 -0.1 90,753 + HMPREF1058_RS05740 0.65 -0.9 90,775 + HMPREF1058_RS05740 0.68 +0.4 90,779 + HMPREF1058_RS05740 0.68 +0.2 90,779 + HMPREF1058_RS05740 0.68 +0.0 90,780 - HMPREF1058_RS05740 0.69 -0.8 90,892 + HMPREF1058_RS05740 0.83 -0.4 90,965 - -0.7 91,314 + HMPREF1058_RS05735 0.51 +1.2 91,516 + -0.5 91,584 - -0.0 91,584 - -1.4 91,690 - HMPREF1058_RS05730 0.18 -0.6 91,775 + HMPREF1058_RS05730 0.26 +0.4 91,909 - +2.8 91,912 + HMPREF1058_RS05730 0.39 -0.6 91,913 - HMPREF1058_RS05730 0.39 -0.9 92,523 + +0.1 92,597 + +0.5 92,598 - -0.6 92,598 - +0.3 92,599 + +0.9 92,600 - -0.1 92,602 - -0.8 92,604 - -1.6 92,638 + -0.4 92,638 + -0.8 92,649 + +1.3 92,649 + +1.6 92,650 - -1.1 92,650 - -1.5 92,650 - +0.0 92,664 + +1.6 92,750 + -0.8 92,774 + +1.2 92,774 + -0.6 92,775 - +1.1 92,775 - +0.5 92,798 + +0.4 92,799 - -0.2 92,838 - +1.5 92,839 + +0.1 92,840 - +0.7 92,840 - +0.1 92,946 - HMPREF1058_RS05725 0.22 -1.4 92,947 + HMPREF1058_RS05725 0.22 +0.2 93,007 - HMPREF1058_RS05725 0.37 +0.1 93,008 + HMPREF1058_RS05725 0.37 -0.5
Or see this region's nucleotide sequence