Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05560 and HMPREF1058_RS05555 are separated by 139 nucleotides HMPREF1058_RS05555 and HMPREF1058_RS05550 overlap by 11 nucleotides HMPREF1058_RS05550 and HMPREF1058_RS05545 are separated by 34 nucleotides HMPREF1058_RS05545 and HMPREF1058_RS05540 are separated by 96 nucleotides HMPREF1058_RS05540 and HMPREF1058_RS05535 are separated by 3 nucleotides
HMPREF1058_RS05560: HMPREF1058_RS05560 - hypothetical protein, at 135,253 to 136,326
_RS05560
HMPREF1058_RS05555: HMPREF1058_RS05555 - MobC family plasmid mobilization relaxosome protein, at 136,466 to 136,774
_RS05555
HMPREF1058_RS05550: HMPREF1058_RS05550 - relaxase/mobilization nuclease domain-containing protein, at 136,764 to 137,702
_RS05550
HMPREF1058_RS05545: HMPREF1058_RS05545 - hypothetical protein, at 137,737 to 138,141
_RS05545
HMPREF1058_RS05540: HMPREF1058_RS05540 - helix-turn-helix transcriptional regulator, at 138,238 to 138,441
_RS05540
HMPREF1058_RS05535: HMPREF1058_RS05535 - DEAD/DEAH box helicase family protein, at 138,445 to 141,297
_RS05535
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 135.922 kb on + strand, within HMPREF1058_RS05560 at 135.923 kb on - strand, within HMPREF1058_RS05560 at 136.444 kb on - strand at 136.465 kb on + strand at 136.808 kb on - strand at 136.830 kb on - strand at 136.830 kb on - strand at 136.940 kb on + strand, within HMPREF1058_RS05550 at 136.942 kb on + strand, within HMPREF1058_RS05550 at 136.942 kb on + strand, within HMPREF1058_RS05550 at 137.022 kb on - strand, within HMPREF1058_RS05550 at 137.070 kb on - strand, within HMPREF1058_RS05550 at 137.175 kb on - strand, within HMPREF1058_RS05550 at 137.369 kb on - strand, within HMPREF1058_RS05550 at 137.485 kb on - strand, within HMPREF1058_RS05550 at 137.869 kb on + strand, within HMPREF1058_RS05545 at 137.869 kb on - strand, within HMPREF1058_RS05545 at 137.870 kb on - strand, within HMPREF1058_RS05545 at 137.870 kb on - strand, within HMPREF1058_RS05545 at 137.925 kb on + strand, within HMPREF1058_RS05545 at 137.926 kb on - strand, within HMPREF1058_RS05545 at 138.022 kb on + strand, within HMPREF1058_RS05545 at 138.022 kb on + strand, within HMPREF1058_RS05545 at 138.052 kb on + strand, within HMPREF1058_RS05545 at 138.052 kb on + strand, within HMPREF1058_RS05545 at 138.053 kb on - strand, within HMPREF1058_RS05545 at 138.105 kb on + strand at 138.109 kb on + strand at 138.139 kb on + strand at 138.145 kb on - strand at 138.199 kb on + strand at 138.206 kb on + strand at 138.221 kb on + strand at 138.222 kb on - strand at 138.335 kb on + strand, within HMPREF1058_RS05540 at 138.343 kb on + strand, within HMPREF1058_RS05540 at 138.398 kb on + strand, within HMPREF1058_RS05540 at 138.408 kb on - strand, within HMPREF1058_RS05540 at 138.425 kb on + strand at 138.523 kb on + strand at 138.523 kb on + strand at 138.523 kb on + strand at 138.525 kb on + strand at 138.530 kb on - strand at 138.571 kb on - strand at 138.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 135,922 + HMPREF1058_RS05560 0.62 +0.6 135,923 - HMPREF1058_RS05560 0.62 +1.5 136,444 - +0.2 136,465 + +0.2 136,808 - -0.6 136,830 - -0.7 136,830 - -0.4 136,940 + HMPREF1058_RS05550 0.19 -2.4 136,942 + HMPREF1058_RS05550 0.19 +0.3 136,942 + HMPREF1058_RS05550 0.19 -1.5 137,022 - HMPREF1058_RS05550 0.27 -0.5 137,070 - HMPREF1058_RS05550 0.33 +0.4 137,175 - HMPREF1058_RS05550 0.44 -0.7 137,369 - HMPREF1058_RS05550 0.64 -1.4 137,485 - HMPREF1058_RS05550 0.77 -0.7 137,869 + HMPREF1058_RS05545 0.33 +0.2 137,869 - HMPREF1058_RS05545 0.33 +0.2 137,870 - HMPREF1058_RS05545 0.33 -1.1 137,870 - HMPREF1058_RS05545 0.33 +1.9 137,925 + HMPREF1058_RS05545 0.46 -0.1 137,926 - HMPREF1058_RS05545 0.47 +0.6 138,022 + HMPREF1058_RS05545 0.70 +0.3 138,022 + HMPREF1058_RS05545 0.70 -0.5 138,052 + HMPREF1058_RS05545 0.78 +0.4 138,052 + HMPREF1058_RS05545 0.78 -1.2 138,053 - HMPREF1058_RS05545 0.78 -0.3 138,105 + -1.0 138,109 + +0.4 138,139 + +1.0 138,145 - -1.6 138,199 + +0.1 138,206 + +1.0 138,221 + +0.1 138,222 - +0.2 138,335 + HMPREF1058_RS05540 0.48 +0.1 138,343 + HMPREF1058_RS05540 0.51 +1.2 138,398 + HMPREF1058_RS05540 0.78 +0.4 138,408 - HMPREF1058_RS05540 0.83 -0.6 138,425 + +0.4 138,523 + +1.1 138,523 + -0.6 138,523 + -0.1 138,525 + -1.0 138,530 - -0.2 138,571 - +0.5 138,692 + +1.2
Or see this region's nucleotide sequence