Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotides HMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotides HMPREF1058_RS04800 and HMPREF1058_RS04795 are separated by 7 nucleotides
HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413
_RS04810
HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895
_RS04805
HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462
_RS04800
HMPREF1058_RS04795: HMPREF1058_RS04795 - ankyrin repeat domain-containing protein, at 316,470 to 317,444
_RS04795
Position (kb) 314
315
316
317 Strain fitness (log2 ratio) -2
-1
0
1 at 314.153 kb on - strand at 314.213 kb on - strand at 314.320 kb on + strand at 314.377 kb on - strand at 314.417 kb on + strand at 314.418 kb on - strand at 314.722 kb on - strand, within HMPREF1058_RS04805 at 314.754 kb on + strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.760 kb on - strand, within HMPREF1058_RS04805 at 314.804 kb on - strand, within HMPREF1058_RS04805 at 314.845 kb on + strand, within HMPREF1058_RS04805 at 315.010 kb on + strand at 315.013 kb on - strand at 315.020 kb on + strand at 315.020 kb on + strand at 315.034 kb on - strand at 315.089 kb on - strand, within HMPREF1058_RS04800 at 315.435 kb on - strand, within HMPREF1058_RS04800 at 315.853 kb on + strand, within HMPREF1058_RS04800 at 316.150 kb on + strand, within HMPREF1058_RS04800 at 316.151 kb on - strand, within HMPREF1058_RS04800 at 316.181 kb on + strand, within HMPREF1058_RS04800 at 316.182 kb on - strand, within HMPREF1058_RS04800 at 316.257 kb on + strand at 316.296 kb on - strand, within HMPREF1058_RS04800 at 316.296 kb on - strand, within HMPREF1058_RS04800 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.723 kb on + strand, within HMPREF1058_RS04795 at 316.724 kb on - strand, within HMPREF1058_RS04795 at 316.781 kb on + strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.782 kb on - strand, within HMPREF1058_RS04795 at 316.809 kb on - strand, within HMPREF1058_RS04795 at 316.899 kb on - strand, within HMPREF1058_RS04795 at 316.899 kb on - strand at 317.016 kb on - strand, within HMPREF1058_RS04795 at 317.040 kb on - strand, within HMPREF1058_RS04795 at 317.169 kb on - strand, within HMPREF1058_RS04795 at 317.298 kb on - strand, within HMPREF1058_RS04795 at 317.301 kb on - strand, within HMPREF1058_RS04795 at 317.323 kb on + strand, within HMPREF1058_RS04795 at 317.377 kb on - strand at 317.451 kb on - strand at 317.455 kb on + strand at 317.456 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 314,153 - -0.6 314,213 - -0.7 314,320 + +0.4 314,377 - -0.2 314,417 + -0.2 314,418 - +0.7 314,722 - HMPREF1058_RS04805 0.64 -1.9 314,754 + HMPREF1058_RS04805 0.71 -0.9 314,755 - HMPREF1058_RS04805 0.71 +0.6 314,755 - HMPREF1058_RS04805 0.71 +0.4 314,760 - HMPREF1058_RS04805 0.72 +0.1 314,804 - HMPREF1058_RS04805 0.81 -0.3 314,845 + HMPREF1058_RS04805 0.90 -0.6 315,010 + -1.0 315,013 - +0.0 315,020 + -1.1 315,020 + -0.8 315,034 - -0.3 315,089 - HMPREF1058_RS04800 0.13 +0.1 315,435 - HMPREF1058_RS04800 0.35 -1.4 315,853 + HMPREF1058_RS04800 0.61 -0.4 316,150 + HMPREF1058_RS04800 0.80 -1.2 316,151 - HMPREF1058_RS04800 0.80 -0.1 316,181 + HMPREF1058_RS04800 0.82 -0.2 316,182 - HMPREF1058_RS04800 0.82 +0.1 316,257 + -0.9 316,296 - HMPREF1058_RS04800 0.89 -1.2 316,296 - HMPREF1058_RS04800 0.89 -0.9 316,723 + HMPREF1058_RS04795 0.26 -1.9 316,723 + HMPREF1058_RS04795 0.26 +0.6 316,724 - HMPREF1058_RS04795 0.26 +0.6 316,781 + HMPREF1058_RS04795 0.32 +0.0 316,782 - HMPREF1058_RS04795 0.32 -0.8 316,782 - HMPREF1058_RS04795 0.32 +0.2 316,809 - HMPREF1058_RS04795 0.35 -0.7 316,899 - HMPREF1058_RS04795 0.44 -0.6 316,899 - -0.7 317,016 - HMPREF1058_RS04795 0.56 -1.6 317,040 - HMPREF1058_RS04795 0.58 +0.8 317,169 - HMPREF1058_RS04795 0.72 -0.4 317,298 - HMPREF1058_RS04795 0.85 +0.2 317,301 - HMPREF1058_RS04795 0.85 +0.6 317,323 + HMPREF1058_RS04795 0.87 -0.2 317,377 - -1.5 317,451 - +0.6 317,455 + -0.5 317,456 - +0.7
Or see this region's nucleotide sequence